Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009529

Physical Location & Seq

Genomic Coordinates Forward (+)

26309030 .. 26310817

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1154900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGCTTCATTCAACTCCACGGCCAAGTACCAGAATGTGTCAAAAGTTTCTGTTGGAGCTTCTATACCAGCAGCCACCACCCAATTCACATCCTTCTTTGGAACATTTGGACAAAGGAGGCGTATAAGTGAAAAACGATGGGGCTTATGTCTTTCAGTTGCGGATAGCAATCAGCTCACCACAGGCACCGGTGACAAGGCTTCCAAAACTACTGCAAGTTCTCCTGATGATCGATTACCAGCTGTTGATTCAACCTCTTCGGCTCAGTTCGAAACGAGTGTCATTGATCAGTCCGGGCCTCAAACCTCTGAGCCTCCCAATGGCTCTTTGGATTCCTCAAATCCAAAGGAGGCATCTCAGTCACCTGACGTGCAACCCAAGTCAAAAAGATCGCCCCTAACAGCAAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGTCGTTACACAGACTCAAAGCCGTCTAAAAATTCAGCTAGGGGCAAGAATGTATTGGATGCTCTCAGAGACAGCGAACGCGGAAAGAAAAGATCCGGACTTCCAGAGGCCCCTACAAACATTTTTGACGACAGCAAGCGAGGGATGCCAAAGCAGGGCCTAACTTGGGATTTTCCGGGTGGTAATGACTTGTTTCTAATTCTCTTTTCGTTTGTATTTATCAGCACGGTGATGTTCACTACAACGTACGTAGTTTGGAAACTTGGTGCCATCCATTTCAATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.27

Weight (kDa)

9.74

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56010
fragaria_vesca	FvH4_7g24710 FvH4_7g24710
malus_domestica	MD01G1154900.v1.1 MD07G1224000.v1.1
prunus_persica	Prupe.2G252500_v2.0.a1
pyrus_communis	pycom01g17230 pycom07g20260
rosa_chinensis	RchiOBHm_Chr1g0370551
rosa_laevigata	RLG00000027027
rosa_multiflora	Rmu_sc0002021.1_g000017 Rmu_sc0021895.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286430
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366900 Rh1BG329400 Rh1BG330400 Rh1CG344700 Rh1DG359700 Rh1DG360400 Rh1DG361900
rosa_wichuraiana	Rw1G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 704
AccII	CGCG	1 cut(s)	519
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	2 cut(s)	164, 519
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	32, 686
AfiI	CCNNNNNNNGG	3 cut(s)	323, 593, 604
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	16, 255, 718
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	4 cut(s)	62, 178, 245, 476
AluI	AGCT	4 cut(s)	62, 178, 245, 476
Alw26I	GTCTC	2 cut(s)	409, 501
AlwI	GGATC	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	4 cut(s)	24, 299, 546, 595
ApeKI	GCWGC	3 cut(s)	5, 74, 425
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AsiGI	ACCGGT	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	299, 547, 595
AsuC2I	CCSGG	2 cut(s)	298, 615
AsuHPI	GGTGA	4 cut(s)	172, 206, 357, 679
AsuII	TTCGAA	1 cut(s)	273
BanI	GGYRCC	2 cut(s)	188, 704
BbvI	GCAGC	2 cut(s)	86, 437
BccI	CCATC	2 cut(s)	135, 716
BceAI	ACGGC	2 cut(s)	39, 445
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	2 cut(s)	298, 615
BcoDI	GTCTC	2 cut(s)	409, 501
BfaI	CTAG	1 cut(s)	477
BisI	GCNGC	3 cut(s)	6, 75, 426
BlsI	GCNGC	3 cut(s)	7, 76, 427
Bme1390I	CCNGG	2 cut(s)	298, 615
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	299, 547, 595
BmiI	GGNNCC	3 cut(s)	190, 549, 706
BmrFI	CCNGG	2 cut(s)	298, 615
BmsI	GCATC	3 cut(s)	365, 487, 573
Bpu14I	TTCGAA	1 cut(s)	273
BpuMI	CCSGG	2 cut(s)	298, 615
Bsa29I	ATCGAT	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	688
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	21, 429
BsaWI	WCCGGW	2 cut(s)	191, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 593, 604
Bse118I	RCCGGY	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	21, 429
BseGI	GGATG	4 cut(s)	92, 502, 588, 708
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	323, 593, 604
BseMII	CTCAG	6 cut(s)	281, 303, 374, 410, 451, 517
BseXI	GCAGC	2 cut(s)	86, 437
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	4 cut(s)	26, 301, 548, 597
BshNI	GGYRCC	2 cut(s)	188, 704
BshTI	ACCGGT	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	4 cut(s)	192, 297, 534, 614
BsiWI	CGTACG	1 cut(s)	684
BslI	CCNNNNNNNGG	3 cut(s)	323, 593, 604
BsmAI	GTCTC	2 cut(s)	409, 501
BsnI	GGCC	4 cut(s)	26, 301, 548, 597
Bsp119I	TTCGAA	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	232, 289, 392, 530
BspACI	CCGC	2 cut(s)	164, 519
BspANI	GGCC	4 cut(s)	26, 301, 548, 597
BspCNI	CTCAG	6 cut(s)	280, 304, 373, 411, 450, 516
BspDI	ATCGAT	1 cut(s)	235
BspEI	TCCGGA	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	190, 549, 706
BspPI	GGATC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	188, 704
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	21, 429
BssMI	GATC	4 cut(s)	232, 289, 392, 530
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	688
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	6 cut(s)	267, 312, 360, 419, 437, 503
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	92, 502, 588, 708
BstFNI	CGCG	1 cut(s)	519
BstKTI	GATC	4 cut(s)	235, 292, 395, 533
BstMAI	GTCTC	2 cut(s)	409, 501
BstMBI	GATC	4 cut(s)	232, 289, 392, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	296, 613
BstSNI	TACGTA	1 cut(s)	688
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	86, 437
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	4 cut(s)	26, 301, 548, 597
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	4 cut(s)	92, 502, 588, 708
Cac8I	GCNNGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	299, 547, 595
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	31, 685
CspAI	ACCGGT	1 cut(s)	191
CviQI	GTAC	2 cut(s)	31, 685
DdeI	CTNAG	6 cut(s)	267, 312, 360, 419, 437, 503
DpnI	GATC	4 cut(s)	234, 291, 394, 532
DpnII	GATC	4 cut(s)	232, 289, 392, 530
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco105I	TACGTA	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	429
EcoO109I	RGGNCCY	2 cut(s)	547, 595
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaiI	YATR	3 cut(s)	68, 128, 151
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	6, 75, 426
FokI	GGATG	4 cut(s)	79, 509, 595, 695
Fsp4HI	GCNGC	3 cut(s)	6, 75, 426
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	3 cut(s)	6, 75, 426
HaeIII	GGCC	4 cut(s)	26, 301, 548, 597
HapII	CCGG	4 cut(s)	192, 297, 534, 614
HinfI	GANTC	3 cut(s)	251, 335, 452
HpaII	CCGG	4 cut(s)	192, 297, 534, 614
HphI	GGTGA	4 cut(s)	172, 206, 357, 679
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	2 cut(s)	313, 506
Hpy188III	TCNNGA	3 cut(s)	227, 534, 542
Hpy8I	GTNNAC	1 cut(s)	675
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	3 cut(s)	372, 683, 687
HpyCH4V	TGCA	2 cut(s)	218, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	583
HpyF3I	CTNAG	6 cut(s)	267, 312, 360, 419, 437, 503
HpySE526I	ACGT	3 cut(s)	372, 683, 687
Kpn2I	TCCGGA	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	232, 289, 392, 530
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	86, 437
LweI	GCATC	3 cut(s)	365, 487, 573
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	3 cut(s)	372, 683, 687
MaeIII	GTNAC	3 cut(s)	194, 363, 443
MalI	GATC	4 cut(s)	234, 291, 394, 532
MboI	GATC	4 cut(s)	232, 289, 392, 530
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	86, 469, 636, 724
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	37
MroI	TCCGGA	1 cut(s)	533
MslI	CAYNNNNRTG	2 cut(s)	668, 717
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	4 cut(s)	192, 297, 534, 614
MspR9I	CCNGG	2 cut(s)	298, 615
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	583
NciI	CCSGG	2 cut(s)	298, 615
NdeII	GATC	4 cut(s)	232, 289, 392, 530
NlaIV	GGNNCC	3 cut(s)	190, 549, 706
NmuCI	GTSAC	2 cut(s)	194, 363
NspV	TTCGAA	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	251, 335
Pfl23II	CGTACG	1 cut(s)	684
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	7, 76, 427
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Ppu21I	YACGTR	1 cut(s)	688
PspLI	CGTACG	1 cut(s)	684
PspN4I	GGNNCC	3 cut(s)	190, 549, 706
PspPI	GGNCC	3 cut(s)	299, 547, 595
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	32, 686
RsaNI	GTAC	2 cut(s)	31, 685
RseI	CAYNNNNRTG	2 cut(s)	668, 717
SatI	GCNGC	3 cut(s)	6, 75, 426
Sau3AI	GATC	4 cut(s)	232, 289, 392, 530
Sau96I	GGNCC	3 cut(s)	299, 547, 595
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	298, 615
SfaNI	GCATC	3 cut(s)	365, 487, 573
SfuI	TTCGAA	1 cut(s)	273
SgrAI	CRCCGGYG	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	668, 717
SnaBI	TACGTA	1 cut(s)	688
Sse9I	AATT	4 cut(s)	86, 469, 636, 724
SsiI	CCGC	2 cut(s)	164, 519
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	296, 613
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	3 cut(s)	375, 686, 690
TaqI	TCGA	2 cut(s)	235, 273
TasI	AATT	4 cut(s)	86, 469, 636, 724
TfiI	GAWTC	2 cut(s)	251, 335
TseFI	GTSAC	2 cut(s)	194, 363
TseI	GCWGC	3 cut(s)	5, 74, 425
Tsp45I	GTSAC	2 cut(s)	194, 363
XapI	RAATTY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.