FvH4_7g24710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009529
Physical Location & Seq
Forward (+)
19047728 .. 19049610
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24710.t1

Sequence Viewer

Length: 780 bp
ATGGCTGTTTCATTCTACTCACTACTCGGCTTCAATTCTACGTTACAAGCCAAGTATCAGAATGTGTCAAGATTTTCTGCTGGAGCTTCTACACCAACAGTCACACAATTCACATCTTCATTTGGAAAGTTTGGGCCAAGAAGGCATATAAACCGAGAAAGATGGGGCTTATGTCTTTCCGTTGCAGATAGCAATCAGCTTACCACAGAAACTGGTGATAAGTCTTCTGAAACTTCAAGTTCTCCTTCTGAGGATCCAATACCAGCTGTTAATTCTTCATCTTTGGGTACTTCTGCCAACAATAGTCAGTTCCAAACTAGTGCCATTGATGAGCCTAGTTCTCAAACCTCTGAGGCTTCCAATGGATCATCAGTTATTTCAAGTCAGAAACAGGAGGAATCATCTCCTCCACCAAACTTGAAACCTAAATCAAAAAGATTGCCGCTAACAGCCAGGGAGAGACTGAGGGCAGCTAAGGTTCTCAGCCGTTACAACACAGAGTCAAAACCAGCTAGAAAGAAATCAGATAGGAGCAAGACTGTACTAGACGCTGCTAGAGCGAGCGATGGTGGGAAGGGAAGATCTGGACTTCCGCAGGCCCCTACAAACATTTTTGATGACAGCAAGCGAGGAATGCCAAAGGATGGCCTAACTTGGGATTTTCCAGGGGGTGCTGATTTGTTTCTAATCATCTTCTCGTTTGTATTCATCAGCACAGTGATGTTTGCCACGACTTACTTTGTCTGGAAAGTTGGTGCTATCCATTTTAATGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.07

Weight (kDa)

9.64

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 644
AciI CCGC 2 cut(s) 443, 593
AclWI GGATC 3 cut(s) 248, 261, 373
AfaI GTAC 2 cut(s) 289, 543
AfiI CCNNNNNNNGG 2 cut(s) 644, 655
AgsI TTSAA 4 cut(s) 34, 237, 381, 421
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 2 cut(s) 452, 664
AluBI AGCT 5 cut(s) 86, 199, 266, 473, 512
AluI AGCT 5 cut(s) 86, 199, 266, 473, 512
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 3 cut(s) 248, 261, 373
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 3 cut(s) 134, 597, 646
ApeKI GCWGC 2 cut(s) 470, 551
AspS9I GGNCC 2 cut(s) 134, 598
AsuHPI GGTGA 1 cut(s) 227
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 482, 538
BccI CCATC 3 cut(s) 156, 560, 638
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 2 cut(s) 454, 666
BcoDI GTCTC 1 cut(s) 454
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 5 cut(s) 318, 336, 513, 545, 555
BglI GCCNNNNNGGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 581
BisI GCNGC 3 cut(s) 443, 471, 552
BlsI GCNGC 3 cut(s) 444, 472, 553
Bme1390I CCNGG 2 cut(s) 454, 666
BmgT120I GGNCC 2 cut(s) 134, 598
BmiI GGNNCC 2 cut(s) 255, 600
BmrFI CCNGG 2 cut(s) 454, 666
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 453, 665
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 655
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 454, 666
BseDI CCNNGG 2 cut(s) 453, 665
BseGI GGATG 1 cut(s) 649
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 644, 655
BseMII CTCAG 4 cut(s) 240, 342, 455, 496
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 482, 538
BshFI GGCC 3 cut(s) 136, 599, 648
BslI CCNNNNNNNGG 2 cut(s) 644, 655
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 3 cut(s) 136, 599, 648
Bsp143I GATC 3 cut(s) 253, 365, 581
BspACI CCGC 2 cut(s) 443, 593
BspANI GGCC 3 cut(s) 136, 599, 648
BspCNI CTCAG 4 cut(s) 241, 343, 456, 495
BspLI GGNNCC 2 cut(s) 255, 600
BspPI GGATC 3 cut(s) 248, 261, 373
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 453, 665
BssMI GATC 3 cut(s) 253, 365, 581
Bst2UI CCWGG 2 cut(s) 454, 666
Bst4CI ACNGT 3 cut(s) 100, 541, 718
BstC8I GCNNGC 3 cut(s) 562, 597, 626
BstDEI CTNAG 5 cut(s) 249, 351, 464, 474, 482
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 3 cut(s) 256, 368, 584
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 3 cut(s) 253, 365, 581
BstMWI GCNNNNNNNGC 3 cut(s) 142, 557, 634
BstNI CCWGG 2 cut(s) 454, 666
BstSCI CCNGG 2 cut(s) 452, 664
BstV1I GCAGC 2 cut(s) 482, 538
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 253, 581
BstYI RGATCY 2 cut(s) 253, 581
BsuRI GGCC 3 cut(s) 136, 599, 648
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 3 cut(s) 562, 597, 626
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 134, 598
CseI GACGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 288, 542
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviQI GTAC 2 cut(s) 288, 542
DdeI CTNAG 5 cut(s) 249, 351, 464, 474, 482
DpnI GATC 3 cut(s) 255, 367, 583
DpnII GATC 3 cut(s) 253, 365, 581
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 452, 664
FaiI YATR 3 cut(s) 147, 149, 172
FalI AAGNNNNNCTT 2 cut(s) 229, 261
Fnu4HI GCNGC 3 cut(s) 443, 471, 552
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 3 cut(s) 443, 471, 552
FspBI CTAG 5 cut(s) 318, 336, 513, 545, 555
GluI GCNGC 3 cut(s) 443, 471, 552
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 136, 599, 648
HgaI GACGC 1 cut(s) 557
HinfI GANTC 2 cut(s) 398, 500
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 6 cut(s) 60, 229, 250, 352, 387, 526
Hpy188III TCNNGA 3 cut(s) 69, 585, 745
HpyAV CCTTC 3 cut(s) 135, 255, 568
HpyCH4III ACNGT 3 cut(s) 100, 541, 718
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 557, 634
HpyF3I CTNAG 5 cut(s) 249, 351, 464, 474, 482
HpySE526I ACGT 1 cut(s) 41
Kzo9I GATC 3 cut(s) 253, 365, 581
LmnI GCTCC 2 cut(s) 83, 531
Lsp1109I GCAGC 2 cut(s) 482, 538
MaeI CTAG 5 cut(s) 318, 336, 513, 545, 555
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 3 cut(s) 42, 100, 488
MalI GATC 3 cut(s) 255, 367, 583
MboI GATC 3 cut(s) 253, 365, 581
MboII GAAGA 5 cut(s) 108, 216, 267, 591, 685
MflI RGATCY 2 cut(s) 253, 581
MluCI AATT 4 cut(s) 34, 107, 271, 775
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 7 cut(s) 244, 346, 358, 388, 417, 459, 623
MseI TTAA 2 cut(s) 270, 768
MslI CAYNNNNRTG 2 cut(s) 719, 768
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 2 cut(s) 454, 666
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 2 cut(s) 454, 666
MwoI GCNNNNNNNGC 3 cut(s) 142, 557, 634
NdeII GATC 3 cut(s) 253, 365, 581
NlaIV GGNNCC 2 cut(s) 255, 600
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 100
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 3 cut(s) 444, 472, 553
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 452, 664
PspGI CCWGG 2 cut(s) 452, 664
PspN4I GGNNCC 2 cut(s) 255, 600
PspPI GGNCC 2 cut(s) 134, 598
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 253, 581
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 289, 543
RsaNI GTAC 2 cut(s) 288, 542
RseI CAYNNNNRTG 2 cut(s) 719, 768
SaqAI TTAA 2 cut(s) 270, 768
SatI GCNGC 3 cut(s) 443, 471, 552
Sau3AI GATC 3 cut(s) 253, 365, 581
Sau96I GGNCC 2 cut(s) 134, 598
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 454, 666
SetI ASST 9 cut(s) 44, 88, 201, 268, 350, 427, 475, 480, 514
SmiMI CAYNNNNRTG 2 cut(s) 719, 768
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 4 cut(s) 34, 107, 271, 775
SsiI CCGC 2 cut(s) 443, 593
SspMI CTAG 5 cut(s) 318, 336, 513, 545, 555
StyD4I CCNGG 2 cut(s) 452, 664
TaaI ACNGT 3 cut(s) 100, 541, 718
TaiI ACGT 1 cut(s) 44
TasI AATT 4 cut(s) 34, 107, 271, 775
TatI WGTACW 1 cut(s) 541
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 270, 768
Tru9I TTAA 2 cut(s) 270, 768
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 470, 551
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 108, 267, 697
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 644
XspI CTAG 5 cut(s) 318, 336, 513, 545, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.