Rh1DG360400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009529
Physical Location & Seq
Forward (+)
58561815 .. 58568978
7164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG360400.1

Sequence Viewer

Length: 1122 bp
ATGGAAATCCGAGCGGATCATGCGCTTGGGGAACGAATAAACTATCATCAAACATGGCGGCAACCATGCTACATAGCCAAAACAGCAGAAGATCTACTCCTCATATCGAGTTTATTCAGAAAAATCTGTGTTTTTAAGCTGGATTACAATTCCGATGGTAGCTACAGATGGATAGAGACAGAGTCCATTGGCAAGGGTGAATTGTATTTGAATAGGGACCAGTCACTACTAACCTCAACAGCCGATGATGCTTCAGAATGCAATAGGAACTCAATTTACTTCACAGACTTGTTGAATTCCGGCAAAGGTGCCTTTGGTTTATTTGCGTATAGTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGACTTGTTACAAGCCAAGTACCAGAAGGTGTCAAGATTTTCTGCTGGAGCTTCTACACCAACAGTCACACAATTCACATCTTCATTTGGAACATTTCGGTCAAGAAGGCATATAAACCGAAAAAGATGGGGTTTATGTCTTTCCGTTGCAGATAGCAATCAGCTTACCACAGAAACTGGTGATAAGGCTTCTGAAACTACTTCAACTTCTCCTTCTGAGGATCCATTACCATCTGTGAGTTCTTCATCTTTGGGTATTTCTGCCAATGATAGTCAGTTCCAAACTAGTGCCATTGACGAGCCTAGTTCTCAAACCTCTGAGGCTTCCAATGGATCATCAGTTAATTCAAGTCAGAAACAGGAGGAAGCATCACCTCCACCAAACTCGCAATCTAAATCAAAAAGATCACCACTAACAGCCAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGCCGTTATAACACGGAGTCAAAGCCAGCTAGAAAGAAATCAGATAGGAGCAAGACTGTACTAGACGCTGCTAGAGCGAGCGACGGTGGGAAAAGAAGATCTGGACTTCCACAGGCCCCTACAAACATTTTCGACGACAGCAAACGAGGAATGCCAAAGGATGGCCTAACTTGGGATTTTCCAGGGGGTGCTGATTTGTTTCTAATCGTCTTCTCGTTTGTTTTCATCAGCACGGTGATGTTTGCTACCACTTACTTTGTCTGGAAAGTTGGTGCCATCCATTTGTTTGAACATGCATTTGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

41.36

Weight (kDa)

9.26

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 19 - 103 8.4e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 308, 1085
AccB7I CCANNNNNTGG 1 cut(s) 974
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 2 cut(s) 14, 58
AclWI GGATC 4 cut(s) 24, 578, 591, 703
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 383, 873
AfiI CCNNNNNNNGG 2 cut(s) 974, 985
AgsI TTSAA 5 cut(s) 211, 295, 567, 711, 1103
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 2 cut(s) 782, 994
AluBI AGCT 5 cut(s) 139, 162, 413, 526, 842
AluI AGCT 5 cut(s) 139, 162, 413, 526, 842
Alw26I GTCTC 2 cut(s) 170, 784
AlwI GGATC 4 cut(s) 24, 578, 591, 703
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 2 cut(s) 927, 976
ApeKI GCWGC 2 cut(s) 800, 881
ApoI RAATTY 1 cut(s) 295
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 217, 358, 928
AsuHPI GGTGA 5 cut(s) 209, 554, 726, 762, 1060
AvaII GGWCC 2 cut(s) 217, 358
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 2 cut(s) 308, 1085
BbsI GAAGAC 1 cut(s) 1015
BbvI GCAGC 2 cut(s) 812, 868
BccI CCATC 6 cut(s) 149, 162, 483, 601, 968, 1097
BceAI ACGGC 1 cut(s) 801
BciT130I CCWGG 2 cut(s) 784, 996
BcoDI GTCTC 2 cut(s) 170, 784
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 5 cut(s) 648, 666, 843, 875, 885
BfmI CTRYAG 1 cut(s) 163
BglII AGATCT 2 cut(s) 91, 911
BisI GCNGC 3 cut(s) 59, 801, 882
BlsI GCNGC 3 cut(s) 60, 802, 883
Bme1390I CCNGG 2 cut(s) 784, 996
Bme18I GGWCC 2 cut(s) 217, 358
BmgT120I GGNCC 3 cut(s) 217, 358, 928
BmiI GGNNCC 5 cut(s) 218, 310, 585, 930, 1087
BmrFI CCNGG 2 cut(s) 784, 996
BmsI GCATC 2 cut(s) 238, 740
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 783, 804, 995
Bsc4I CCNNNNNNNGG 2 cut(s) 974, 985
Bse1I ACTGG 2 cut(s) 220, 544
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 784, 996
BseDI CCNNGG 3 cut(s) 783, 804, 995
BseGI GGATG 2 cut(s) 979, 1089
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 974, 985
BseMII CTCAG 4 cut(s) 570, 672, 785, 826
BseNI ACTGG 2 cut(s) 220, 544
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 812, 868
BshFI GGCC 2 cut(s) 929, 978
BshNI GGYRCC 2 cut(s) 308, 1085
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 974, 985
BsmAI GTCTC 2 cut(s) 170, 784
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 263, 969
BsnI GGCC 2 cut(s) 929, 978
Bsp143I GATC 6 cut(s) 16, 91, 583, 695, 767, 911
BspACI CCGC 2 cut(s) 14, 58
BspANI GGCC 2 cut(s) 929, 978
BspCNI CTCAG 4 cut(s) 571, 673, 786, 825
BspLI GGNNCC 5 cut(s) 218, 310, 585, 930, 1087
BspPI GGATC 4 cut(s) 24, 578, 591, 703
BspT107I GGYRCC 2 cut(s) 308, 1085
BsrBI CCGCTC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 220, 544
BssECI CCNNGG 3 cut(s) 783, 804, 995
BssMI GATC 6 cut(s) 16, 91, 583, 695, 767, 911
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 784, 996
Bst4CI ACNGT 4 cut(s) 427, 871, 899, 1048
BstC8I GCNNGC 2 cut(s) 840, 892
BstDEI CTNAG 4 cut(s) 579, 681, 794, 812
BstF5I GGATG 2 cut(s) 979, 1089
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 6 cut(s) 19, 94, 586, 698, 770, 914
BstMAI GTCTC 2 cut(s) 170, 784
BstMBI GATC 6 cut(s) 16, 91, 583, 695, 767, 911
BstMWI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
BstNI CCWGG 2 cut(s) 784, 996
BstNSI RCATGY 1 cut(s) 1109
BstSCI CCNGG 2 cut(s) 782, 994
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 812, 868
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 3 cut(s) 91, 583, 911
BstYI RGATCY 3 cut(s) 91, 583, 911
BsuRI GGCC 2 cut(s) 929, 978
BtsCI GGATG 2 cut(s) 979, 1089
Cac8I GCNNGC 2 cut(s) 840, 892
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 217, 358, 928
CseI GACGC 1 cut(s) 887
Csp6I GTAC 2 cut(s) 382, 872
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 4 cut(s) 20, 54, 66, 1106
CviQI GTAC 2 cut(s) 382, 872
DdeI CTNAG 4 cut(s) 579, 681, 794, 812
DpnI GATC 6 cut(s) 18, 93, 585, 697, 769, 913
DpnII GATC 6 cut(s) 16, 91, 583, 695, 767, 911
Eco130I CCWWGG 1 cut(s) 804
Eco47I GGWCC 2 cut(s) 217, 358
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 928
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 782, 994
EcoT14I CCWWGG 1 cut(s) 804
EcoT22I ATGCAT 1 cut(s) 1111
ErhI CCWWGG 1 cut(s) 804
FaeI CATG 4 cut(s) 23, 57, 69, 1109
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 19, 53, 65, 1105
Fnu4HI GCNGC 3 cut(s) 59, 801, 882
FokI GGATG 2 cut(s) 986, 1076
Fsp4HI GCNGC 3 cut(s) 59, 801, 882
FspBI CTAG 5 cut(s) 648, 666, 843, 875, 885
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 59, 801, 882
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 929, 978
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 25
Hin1II CATG 4 cut(s) 23, 57, 69, 1109
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 182, 830
HpaII CCGG 1 cut(s) 300
HphI GGTGA 5 cut(s) 209, 554, 726, 762, 1060
Hpy188I TCNGA 9 cut(s) 11, 119, 154, 256, 556, 580, 682, 717, 856
Hpy188III TCNNGA 4 cut(s) 396, 465, 915, 1075
Hpy99I CGWCG 2 cut(s) 899, 950
HpyAV CCTTC 3 cut(s) 382, 462, 585
HpyCH4III ACNGT 4 cut(s) 427, 871, 899, 1048
HpyCH4V TGCA 3 cut(s) 261, 512, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
HpyF3I CTNAG 4 cut(s) 579, 681, 794, 812
Hsp92II CATG 4 cut(s) 23, 57, 69, 1109
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 6 cut(s) 16, 91, 583, 695, 767, 911
LmnI GCTCC 2 cut(s) 410, 861
Lsp1109I GCAGC 2 cut(s) 812, 868
LweI GCATC 2 cut(s) 238, 740
MaeI CTAG 5 cut(s) 648, 666, 843, 875, 885
MaeIII GTNAC 3 cut(s) 222, 369, 427
MalI GATC 6 cut(s) 18, 93, 585, 697, 769, 913
MbiI CCGCTC 1 cut(s) 14
MboI GATC 6 cut(s) 16, 91, 583, 695, 767, 911
MboII GAAGA 6 cut(s) 101, 362, 435, 597, 921, 1015
MflI RGATCY 3 cut(s) 91, 583, 911
MluCI AATT 6 cut(s) 148, 200, 273, 295, 434, 706
MlyI GAGTC 2 cut(s) 191, 839
MnlI CCTC 9 cut(s) 110, 244, 574, 676, 688, 718, 747, 789, 953
Mph1103I ATGCAT 1 cut(s) 1111
MseI TTAA 4 cut(s) 135, 335, 705, 1120
MslI CAYNNNNRTG 1 cut(s) 1049
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 784, 996
Mva1269I GAATGC 2 cut(s) 263, 969
MvaI CCWGG 2 cut(s) 784, 996
MwoI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
NdeII GATC 6 cut(s) 16, 91, 583, 695, 767, 911
NlaIII CATG 4 cut(s) 23, 57, 69, 1109
NlaIV GGNNCC 5 cut(s) 218, 310, 585, 930, 1087
NmuCI GTSAC 2 cut(s) 222, 427
NsiI ATGCAT 1 cut(s) 1111
NspI RCATGY 1 cut(s) 1109
PctI GAATGC 2 cut(s) 263, 969
PflFI GACNNNGTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 974
PkrI GCNGC 3 cut(s) 60, 802, 883
PleI GAGTC 2 cut(s) 190, 838
PpsI GAGTC 2 cut(s) 190, 838
PsiI TTATAA 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 782, 994
PspGI CCWGG 2 cut(s) 782, 994
PspN4I GGNNCC 5 cut(s) 218, 310, 585, 930, 1087
PspPI GGNCC 3 cut(s) 217, 358, 928
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 3 cut(s) 91, 583, 911
PsyI GACNNNGTC 1 cut(s) 181
RsaI GTAC 2 cut(s) 383, 873
RsaNI GTAC 2 cut(s) 382, 872
RseI CAYNNNNRTG 1 cut(s) 1049
SaqAI TTAA 4 cut(s) 135, 335, 705, 1120
SatI GCNGC 3 cut(s) 59, 801, 882
Sau3AI GATC 6 cut(s) 16, 91, 583, 695, 767, 911
Sau96I GGNCC 3 cut(s) 217, 358, 928
SchI GAGTC 2 cut(s) 191, 839
ScrFI CCNGG 2 cut(s) 784, 996
SfaNI GCATC 2 cut(s) 238, 740
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 217, 358
SmiMI CAYNNNNRTG 1 cut(s) 1049
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 6 cut(s) 148, 200, 273, 295, 434, 706
SsiI CCGC 2 cut(s) 14, 58
SspMI CTAG 5 cut(s) 648, 666, 843, 875, 885
StyD4I CCNGG 2 cut(s) 782, 994
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 4 cut(s) 427, 871, 899, 1048
TaqI TCGA 2 cut(s) 107, 945
TaqII GACCGA 1 cut(s) 450
TasI AATT 6 cut(s) 148, 200, 273, 295, 434, 706
TatI WGTACW 1 cut(s) 871
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 4 cut(s) 135, 335, 705, 1120
Tru9I TTAA 4 cut(s) 135, 335, 705, 1120
TseFI GTSAC 2 cut(s) 222, 427
TseI GCWGC 2 cut(s) 800, 881
Tsp45I GTSAC 2 cut(s) 222, 427
TspDTI ATGAA 3 cut(s) 435, 597, 1027
TspGWI ACGGA 2 cut(s) 496, 842
Tth111I GACNNNGTC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 2 cut(s) 217, 358
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 1109
XspI CTAG 5 cut(s) 648, 666, 843, 875, 885
Zsp2I ATGCAT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.