Rh1BG330400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009529
Physical Location & Seq
Forward (+)
46743876 .. 46745911
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG330400.1

Sequence Viewer

Length: 783 bp
ATGGCTGTTTCATTCAACTCAGTACTTGGCTTCAATTCTACGTTACAAGCCAAGTACCAGAATGTGTCAAGATTTTCCGCTGGAGCTTCTACACCAACAGTCACACAATTATCATCTTCATTTGGAACATTTCGGCCAAGAAGGCATATAAACCGAAAAAGATGGGGTTTATGTCTTTCCGTTGCAGATAGCAATCAGCTTACCACAGAAACTGGTGATAAGGCTTCTGAAACTACTTCAACTTCTCCTTCTGAGGATCCATTACCAGCTGCAAGTTCTTCATCTTTGGGTACTTCTGCCAATGATAGTCAGTTCCAAACTAGTGCCATTGACGAGCCTAGGTCTCAAACCTCTGAGGCTTCCAATGGATCATCGGTTAATTCAAGTCAGAAACAGGAGGAAGCATCGCCTCCACCAAACTCGCAATCTAAATCAAAAAGATCACCACTAACAGCCAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGCCGTTATAACACGGAGTCAAAGCCAGCTAGAAAGAAATCAGATAGGAGCAAGACTGTACTAGACGCTGCTAGAGCGAGCGACGGTGGGAAGAGAAGATCTGGACTTCCACAGGCCCCTACAAACATTTTCGACGACAGCAAACGAGGAATGCCGAAGGATGGCCTAACTTGGGATTTTCCAGGGGGTGCTGATTTGTTTCTAATCGTCTTCTCGTTTGTTTTCATCAGCACGGTGATGTTTGCTACCACTTACTTTGTCTGGAAAGTTGGTGCCATCCATTTTAATGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.15

Weight (kDa)

9.9

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 758
AciI CCGC 1 cut(s) 78
AclWI GGATC 3 cut(s) 251, 264, 376
AcoI YGGCCR 1 cut(s) 134
AfaI GTAC 4 cut(s) 24, 56, 292, 546
AfiI CCNNNNNNNGG 2 cut(s) 647, 658
AgsI TTSAA 4 cut(s) 16, 34, 240, 384
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 2 cut(s) 455, 667
AluBI AGCT 4 cut(s) 86, 199, 269, 515
AluI AGCT 4 cut(s) 86, 199, 269, 515
Alw26I GTCTC 2 cut(s) 348, 457
AlwI GGATC 3 cut(s) 251, 264, 376
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 3 cut(s) 134, 600, 649
ApeKI GCWGC 3 cut(s) 269, 473, 554
AspA2I CCTAGG 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 3 cut(s) 227, 435, 733
AvrII CCTAGG 1 cut(s) 338
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 688
BbvI GCAGC 3 cut(s) 256, 485, 541
BccI CCATC 3 cut(s) 156, 641, 770
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 2 cut(s) 457, 669
BcoDI GTCTC 2 cut(s) 348, 457
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 5 cut(s) 321, 339, 516, 548, 558
BglI GCCNNNNNGGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 584
BisI GCNGC 3 cut(s) 270, 474, 555
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 3 cut(s) 271, 475, 556
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 457, 669
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 3 cut(s) 258, 603, 760
BmrFI CCNGG 2 cut(s) 457, 669
BmsI GCATC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 4 cut(s) 338, 456, 477, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 658
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 457, 669
BseDI CCNNGG 4 cut(s) 338, 456, 477, 668
BseGI GGATG 2 cut(s) 652, 762
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 647, 658
BseMII CTCAG 5 cut(s) 33, 243, 345, 458, 499
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 256, 485, 541
BshFI GGCC 3 cut(s) 136, 602, 651
BshNI GGYRCC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 647, 658
BsmAI GTCTC 2 cut(s) 348, 457
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 3 cut(s) 136, 602, 651
Bso31I GGTCTC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 256, 368, 440, 584
BspACI CCGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 136, 602, 651
BspCNI CTCAG 5 cut(s) 32, 244, 346, 459, 498
BspLI GGNNCC 3 cut(s) 258, 603, 760
BspPI GGATC 3 cut(s) 251, 264, 376
BspT107I GGYRCC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 338, 456, 477, 668
BssMI GATC 4 cut(s) 256, 368, 440, 584
BssT1I CCWWGG 2 cut(s) 338, 477
Bst2UI CCWGG 2 cut(s) 457, 669
Bst4CI ACNGT 4 cut(s) 100, 544, 572, 721
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 513, 565
BstDEI CTNAG 5 cut(s) 19, 252, 354, 467, 485
BstF5I GGATG 2 cut(s) 652, 762
BstKTI GATC 4 cut(s) 259, 371, 443, 587
BstMAI GTCTC 2 cut(s) 348, 457
BstMBI GATC 4 cut(s) 256, 368, 440, 584
BstMWI GCNNNNNNNGC 2 cut(s) 142, 560
BstNI CCWGG 2 cut(s) 457, 669
BstSCI CCNGG 2 cut(s) 455, 667
BstV1I GCAGC 3 cut(s) 256, 485, 541
BstV2I GAAGAC 1 cut(s) 688
BstX2I RGATCY 2 cut(s) 256, 584
BstYI RGATCY 2 cut(s) 256, 584
BsuRI GGCC 3 cut(s) 136, 602, 651
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 652, 762
Cac8I GCNNGC 2 cut(s) 513, 565
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 601
CseI GACGC 1 cut(s) 560
Csp6I GTAC 4 cut(s) 23, 55, 291, 545
CspCI CAANNNNNGTGG 2 cut(s) 724, 759
CviQI GTAC 4 cut(s) 23, 55, 291, 545
DdeI CTNAG 5 cut(s) 19, 252, 354, 467, 485
DpnI GATC 4 cut(s) 258, 370, 442, 586
DpnII GATC 4 cut(s) 256, 368, 440, 584
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 338, 477
Eco31I GGTCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 455, 667
EcoT14I CCWWGG 2 cut(s) 338, 477
ErhI CCWWGG 2 cut(s) 338, 477
FaiI YATR 4 cut(s) 147, 149, 172, 495
Fnu4HI GCNGC 3 cut(s) 270, 474, 555
FokI GGATG 2 cut(s) 659, 749
Fsp4HI GCNGC 3 cut(s) 270, 474, 555
FspBI CTAG 5 cut(s) 321, 339, 516, 548, 558
GluI GCNGC 3 cut(s) 270, 474, 555
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 136, 602, 651
HgaI GACGC 1 cut(s) 560
HinfI GANTC 1 cut(s) 503
HphI GGTGA 3 cut(s) 227, 435, 733
Hpy188I TCNGA 5 cut(s) 229, 253, 355, 390, 529
Hpy188III TCNNGA 3 cut(s) 69, 588, 748
Hpy99I CGWCG 2 cut(s) 572, 623
HpyAV CCTTC 3 cut(s) 135, 258, 637
HpyCH4III ACNGT 4 cut(s) 100, 544, 572, 721
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 185, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 560
HpyF3I CTNAG 5 cut(s) 19, 252, 354, 467, 485
HpySE526I ACGT 1 cut(s) 41
Kzo9I GATC 4 cut(s) 256, 368, 440, 584
LmnI GCTCC 2 cut(s) 83, 534
Lsp1109I GCAGC 3 cut(s) 256, 485, 541
LweI GCATC 1 cut(s) 413
MaeI CTAG 5 cut(s) 321, 339, 516, 548, 558
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 42, 100
MalI GATC 4 cut(s) 258, 370, 442, 586
MboI GATC 4 cut(s) 256, 368, 440, 584
MboII GAAGA 5 cut(s) 108, 270, 589, 594, 688
MflI RGATCY 2 cut(s) 256, 584
MluCI AATT 4 cut(s) 34, 107, 379, 778
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 7 cut(s) 247, 349, 361, 391, 420, 462, 626
MseI TTAA 2 cut(s) 378, 771
MslI CAYNNNNRTG 2 cut(s) 722, 771
MspA1I CMGCKG 2 cut(s) 80, 269
MspR9I CCNGG 2 cut(s) 457, 669
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 2 cut(s) 457, 669
MwoI GCNNNNNNNGC 2 cut(s) 142, 560
NdeII GATC 4 cut(s) 256, 368, 440, 584
NlaIV GGNNCC 3 cut(s) 258, 603, 760
NmuCI GTSAC 1 cut(s) 100
PctI GAATGC 1 cut(s) 642
PkrI GCNGC 3 cut(s) 271, 475, 556
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 455, 667
PspGI CCWGG 2 cut(s) 455, 667
PspN4I GGNNCC 3 cut(s) 258, 603, 760
PspPI GGNCC 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 256, 584
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 4 cut(s) 24, 56, 292, 546
RsaNI GTAC 4 cut(s) 23, 55, 291, 545
RseI CAYNNNNRTG 2 cut(s) 722, 771
SaqAI TTAA 2 cut(s) 378, 771
SatI GCNGC 3 cut(s) 270, 474, 555
Sau3AI GATC 4 cut(s) 256, 368, 440, 584
Sau96I GGNCC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 457, 669
SetI ASST 8 cut(s) 44, 88, 201, 271, 344, 353, 483, 517
SfaNI GCATC 1 cut(s) 413
SmiMI CAYNNNNRTG 2 cut(s) 722, 771
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 4 cut(s) 34, 107, 379, 778
SsiI CCGC 1 cut(s) 78
SspMI CTAG 5 cut(s) 321, 339, 516, 548, 558
StyD4I CCNGG 2 cut(s) 455, 667
StyI CCWWGG 2 cut(s) 338, 477
TaaI ACNGT 4 cut(s) 100, 544, 572, 721
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 618
TasI AATT 4 cut(s) 34, 107, 379, 778
TatI WGTACW 2 cut(s) 22, 544
Tru1I TTAA 2 cut(s) 378, 771
Tru9I TTAA 2 cut(s) 378, 771
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 269, 473, 554
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 108, 270, 700
TspGWI ACGGA 2 cut(s) 169, 515
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 5 cut(s) 321, 339, 516, 548, 558
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.