Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009529

Physical Location & Seq

Genomic Coordinates Forward (+)

16590990 .. 16592478

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTGTTTCATTCAACTCGGTGCTGGGCTTCAACTCCACGTTACAGGCCAAGTACCAGAATGTGTCGAAAGTTTCTGTTGGAGCTTCTATACCAGCGGCCACCACCCAATTCACATCCTTCTTTGGAACATTTGGACAAAGGAGGCGTATAAGTGAAAAACGATGGGGCTTATGTCTTTCAGTTGCGGATGGCAATCAGCTCACCACAGACCCCAGTGACAAGGCTTCCGAAACTACTCCAATTTCTCCCGATGGTCGATTACCAGCTGTTGATTCAACGTCTTCGGCTCAGTTCCGAACGAGTGTCCTTGATCAGTCCGGGCCTCCAAGCTCTGAGCCTCCCAATGGCTCGTTGGATTCCTCAAATCCAAAGGAGGCATCTCAGTCACCTGACGTGCAACCCAAGTCAAAAAGATCGCCCCTAACAGCAAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGTCGTTACACGGACTCAAAGCCGTCTAAAAAATCAGCTAGGGGCAAGAATGTATTGGATGCTCTCAGAGACAGCGAACGCGGAAAGAAAAGATCCGGACTTCCAGAGGCCCCTACAAACATTTTTGACGACAGCAAGCGAGGGATGCCAAAGCAGGGCCTCACTTGGGAATTTCCGGGGGGTAATGATTTGTTTCTGATTCTCTTTTCGTTTGTATTTATCAGCACGGTGATGTTCGCTACAACGTACGTAGTTTGGAAACTTGGTGCCATACACTTCAATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.19

Weight (kDa)

9.83

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56010
fragaria_vesca	FvH4_7g24710 FvH4_7g24710
malus_domestica	MD01G1154900.v1.1 MD07G1224000.v1.1
prunus_persica	Prupe.2G252500_v2.0.a1
pyrus_communis	pycom01g17230 pycom07g20260
rosa_chinensis	RchiOBHm_Chr1g0370551
rosa_laevigata	RLG00000027027
rosa_multiflora	Rmu_sc0002021.1_g000017 Rmu_sc0021895.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286430
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366900 Rh1BG329400 Rh1BG330400 Rh1CG344700 Rh1DG359700 Rh1DG360400 Rh1DG361900
rosa_wichuraiana	Rw1G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccII	CGCG	1 cut(s)	543
AccIII	TCCGGA	1 cut(s)	557
AciI	CCGC	3 cut(s)	98, 188, 543
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	632
AfaI	GTAC	2 cut(s)	56, 710
AfiI	CCNNNNNNNGG	3 cut(s)	347, 617, 628
AgsI	TTSAA	4 cut(s)	16, 34, 279, 742
AjiI	CACGTC	1 cut(s)	397
AluBI	AGCT	5 cut(s)	86, 202, 269, 333, 500
AluI	AGCT	5 cut(s)	86, 202, 269, 333, 500
Alw26I	GTCTC	2 cut(s)	433, 525
AlwI	GGATC	1 cut(s)	549
Aor13HI	TCCGGA	1 cut(s)	557
AoxI	GGCC	5 cut(s)	48, 99, 323, 570, 619
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	632
AspS9I	GGNCC	3 cut(s)	323, 571, 619
AsuC2I	CCSGG	2 cut(s)	322, 639
AsuHPI	GGTGA	3 cut(s)	196, 381, 703
BanI	GGYRCC	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	3 cut(s)	159, 185, 248
BceAI	ACGGC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	322, 639
BcoDI	GTCTC	2 cut(s)	433, 525
BfaI	CTAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	99, 450
BlsI	GCNGC	2 cut(s)	100, 451
Bme1390I	CCNGG	2 cut(s)	322, 639
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	323, 571, 619
BmiI	GGNNCC	2 cut(s)	573, 730
BmrFI	CCNGG	2 cut(s)	322, 639
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	389, 511, 597
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	322, 639
BsaAI	YACGTR	1 cut(s)	712
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	453, 638
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 617, 628
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	453, 638
BseGI	GGATG	4 cut(s)	116, 196, 526, 612
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	347, 617, 628
BseMII	CTCAG	6 cut(s)	305, 327, 398, 434, 475, 541
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	461
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	5 cut(s)	50, 101, 325, 572, 621
BshNI	GGYRCC	1 cut(s)	728
BsiSI	CCGG	3 cut(s)	321, 558, 638
BsiWI	CGTACG	1 cut(s)	708
BslI	CCNNNNNNNGG	3 cut(s)	347, 617, 628
BsmAI	GTCTC	2 cut(s)	433, 525
BsnI	GGCC	5 cut(s)	50, 101, 325, 572, 621
Bsp13I	TCCGGA	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	313, 416, 554
BspACI	CCGC	3 cut(s)	98, 188, 543
BspANI	GGCC	5 cut(s)	50, 101, 325, 572, 621
BspCNI	CTCAG	6 cut(s)	304, 328, 397, 435, 474, 540
BspEI	TCCGGA	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	573, 730
BspPI	GGATC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	453, 638
BssMI	GATC	3 cut(s)	313, 416, 554
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	691
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	6 cut(s)	291, 336, 384, 443, 461, 527
BstF5I	GGATG	4 cut(s)	116, 196, 526, 612
BstFNI	CGCG	1 cut(s)	543
BstKTI	GATC	3 cut(s)	316, 419, 557
BstMAI	GTCTC	2 cut(s)	433, 525
BstMBI	GATC	3 cut(s)	313, 416, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	320, 637
BstSNI	TACGTA	1 cut(s)	712
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	5 cut(s)	50, 101, 325, 572, 621
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	4 cut(s)	116, 196, 526, 612
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	323, 571, 619
Csp6I	GTAC	2 cut(s)	55, 709
CviQI	GTAC	2 cut(s)	55, 709
DdeI	CTNAG	6 cut(s)	291, 336, 384, 443, 461, 527
DpnI	GATC	3 cut(s)	315, 418, 556
DpnII	GATC	3 cut(s)	313, 416, 554
EaeI	YGGCCR	1 cut(s)	99
Eco105I	TACGTA	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	453
EcoO109I	RGGNCCY	2 cut(s)	571, 619
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaiI	YATR	4 cut(s)	92, 152, 175, 734
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	99, 450
FokI	GGATG	4 cut(s)	103, 203, 533, 619
Fsp4HI	GCNGC	2 cut(s)	99, 450
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	99, 450
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	5 cut(s)	50, 101, 325, 572, 621
HapII	CCGG	3 cut(s)	321, 558, 638
HinfI	GANTC	4 cut(s)	275, 359, 476, 661
HpaII	CCGG	3 cut(s)	321, 558, 638
HphI	GGTGA	3 cut(s)	196, 381, 703
Hpy188I	TCNGA	5 cut(s)	232, 299, 337, 530, 660
Hpy188III	TCNNGA	3 cut(s)	251, 558, 566
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	5 cut(s)	41, 281, 396, 707, 711
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	6 cut(s)	291, 336, 384, 443, 461, 527
HpySE526I	ACGT	5 cut(s)	41, 281, 396, 707, 711
Kpn2I	TCCGGA	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	313, 416, 554
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	3 cut(s)	389, 511, 597
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	5 cut(s)	41, 281, 396, 707, 711
MaeIII	GTNAC	4 cut(s)	42, 218, 387, 467
MalI	GATC	3 cut(s)	315, 418, 556
MboI	GATC	3 cut(s)	313, 416, 554
MboII	GAAGA	1 cut(s)	276
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	4 cut(s)	110, 243, 632, 748
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	61, 336
MnlI	CCTC	9 cut(s)	138, 336, 351, 370, 373, 438, 562, 596, 632
MroI	TCCGGA	1 cut(s)	557
MslI	CAYNNNNRTG	2 cut(s)	692, 741
MspA1I	CMGCKG	2 cut(s)	98, 269
MspI	CCGG	3 cut(s)	321, 558, 638
MspR9I	CCNGG	2 cut(s)	322, 639
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	2 cut(s)	322, 639
NdeII	GATC	3 cut(s)	313, 416, 554
NlaIV	GGNNCC	2 cut(s)	573, 730
NmuCI	GTSAC	2 cut(s)	218, 387
PfeI	GAWTC	3 cut(s)	275, 359, 661
Pfl23II	CGTACG	1 cut(s)	708
PkrI	GCNGC	2 cut(s)	100, 451
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	25
PspLI	CGTACG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	573, 730
PspPI	GGNCC	3 cut(s)	323, 571, 619
PsuI	RGATCY	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	56, 710
RsaNI	GTAC	2 cut(s)	55, 709
RseI	CAYNNNNRTG	2 cut(s)	692, 741
SatI	GCNGC	2 cut(s)	99, 450
Sau3AI	GATC	3 cut(s)	313, 416, 554
Sau96I	GGNCC	3 cut(s)	323, 571, 619
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	322, 639
SfaNI	GCATC	3 cut(s)	389, 511, 597
SmiMI	CAYNNNNRTG	2 cut(s)	692, 741
SnaBI	TACGTA	1 cut(s)	712
Sse9I	AATT	4 cut(s)	110, 243, 632, 748
SsiI	CCGC	3 cut(s)	98, 188, 543
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	320, 637
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	5 cut(s)	44, 284, 399, 710, 714
TaqI	TCGA	2 cut(s)	68, 259
TasI	AATT	4 cut(s)	110, 243, 632, 748
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	275, 359, 661
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	218, 387
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	2 cut(s)	218, 387
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.