Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009529

Physical Location & Seq

Genomic Coordinates Forward (+)

26641592 .. 26643692

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGTTTCATTCTACTCGGCCGTTGGCTTCAATTCTATGTTAAAAGCCAAGTACCAGAGCATGTCACAATTTTCTGCTGGAGCTTGTATACCTACGGCTTCCCAATTCACATCTTCATTCGGAACATTTAGGCCAAAGAGGGATATAAGCAAGAAAAGATGGGGCTTATGTCTTTCAGTTGCTGATAGCAATCGTCTTACCACAGAGACCGATGATAAGGCTTCTGGAAATACTGCAAGTTCTCCTTCTGATGACCGATTACCAATTGTGAATTCTTCATCTTTGGGTTCTTCTGCCAACGACAGTCAGTTCCAAACTAGTGTCCTAGATCAGTCAGGGACTCAAACCTCTGAGCCTTCCAATGGGTCTTCAGTTTCCTCAAGCCAGGAGCGGGACGCACCTCTGTCACCTAATGTGCAATCTAAATCAAAAAGATTGCCGCTAACAGCTAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGGCGTTATAACACTGAAACAAAGCCAACTAAAAAATCAGAGAGGGGCAAGAATGTATTAGATGCTCTCAGAGACAGTGAACGTGGGAAGAAAAGATCCGGACTTCCAGAGGCCCCTACAAACATTTTTGACGACAGCAAGCGAGGGATGCCAAAGCAGGGCCTAACTTGGGATTTTCCAGGGGGTGCTGATTTGTTTCTAATTATCTTCTCATTTGTATTTATCAGCACGGTCATGTTTGCTACAACTTACGTTGTTTGGAAACTTGGTGCCATCCATTTCAATGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.21

Weight (kDa)

9.77

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56010
fragaria_vesca	FvH4_7g24710 FvH4_7g24710
malus_domestica	MD01G1154900.v1.1 MD07G1224000.v1.1
prunus_persica	Prupe.2G252500_v2.0.a1
pyrus_communis	pycom01g17230 pycom07g20260
rosa_chinensis	RchiOBHm_Chr1g0370551
rosa_laevigata	RLG00000027027
rosa_multiflora	Rmu_sc0002021.1_g000017 Rmu_sc0021895.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286430
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366900 Rh1BG329400 Rh1BG330400 Rh1CG344700 Rh1DG359700 Rh1DG360400 Rh1DG361900
rosa_wichuraiana	Rw1G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	2 cut(s)	394, 443
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	4 cut(s)	365, 394, 641, 652
AgsI	TTSAA	2 cut(s)	34, 766
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	387, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	2 cut(s)	86, 452
AluI	AGCT	2 cut(s)	86, 452
Alw26I	GTCTC	3 cut(s)	203, 454, 549
AlwI	GGATC	1 cut(s)	573
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	4 cut(s)	21, 134, 594, 643
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	595, 643
AsuHPI	GGTGA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	156, 764
BceAI	ACGGC	2 cut(s)	8, 114
BciT130I	CCWGG	2 cut(s)	389, 663
BcoDI	GTCTC	3 cut(s)	203, 454, 549
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	3 cut(s)	321, 329, 453
BisI	GCNGC	2 cut(s)	443, 471
BlsI	GCNGC	2 cut(s)	444, 472
Bme1390I	CCNGG	2 cut(s)	389, 663
BmgT120I	GGNCC	2 cut(s)	595, 643
BmiI	GGNNCC	2 cut(s)	597, 754
BmrFI	CCNGG	2 cut(s)	389, 663
BmsI	GCATC	2 cut(s)	535, 621
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	474, 662
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 394, 641, 652
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	389, 663
BseDI	CCNNGG	2 cut(s)	474, 662
BseGI	GGATG	2 cut(s)	636, 756
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	365, 394, 641, 652
BseMII	CTCAG	4 cut(s)	345, 455, 496, 565
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	23, 136, 596, 645
BshNI	GGYRCC	1 cut(s)	752
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	355, 410
BslI	CCNNNNNNNGG	4 cut(s)	365, 394, 641, 652
BsmAI	GTCTC	3 cut(s)	203, 454, 549
BsmFI	GGGAC	2 cut(s)	355, 410
BsnI	GGCC	4 cut(s)	23, 136, 596, 645
Bso31I	GGTCTC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	331, 578
BspACI	CCGC	2 cut(s)	394, 443
BspANI	GGCC	4 cut(s)	23, 136, 596, 645
BspCNI	CTCAG	4 cut(s)	346, 456, 495, 564
BspEI	TCCGGA	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	597, 754
BspPI	GGATC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	474, 662
BssMI	GATC	2 cut(s)	331, 578
BssNAI	GTATAC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	92
Bst2UI	CCWGG	2 cut(s)	389, 663
Bst4CI	ACNGT	3 cut(s)	308, 560, 715
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	4 cut(s)	354, 464, 482, 551
BstF5I	GGATG	2 cut(s)	636, 756
BstKTI	GATC	2 cut(s)	334, 581
BstMAI	GTCTC	3 cut(s)	203, 454, 549
BstMBI	GATC	2 cut(s)	331, 578
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNI	CCWGG	2 cut(s)	389, 663
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	387, 661
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BstZ17I	GTATAC	1 cut(s)	92
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	23, 136, 596, 645
BtsCI	GGATG	2 cut(s)	636, 756
BtsIMutI	CAGTG	2 cut(s)	495, 565
Cac8I	GCNNGC	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	595, 643
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	64, 718
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	4 cut(s)	354, 464, 482, 551
DpnI	GATC	2 cut(s)	333, 580
DpnII	GATC	2 cut(s)	331, 578
EaeI	YGGCCR	1 cut(s)	21
EagI	CGGCCG	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	595, 643
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	387, 661
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	67, 721
FaiI	YATR	7 cut(s)	41, 65, 92, 149, 172, 492, 719
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FaqI	GGGAC	2 cut(s)	355, 410
FatI	CATG	2 cut(s)	63, 717
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	443, 471
FokI	GGATG	2 cut(s)	643, 743
Fsp4HI	GCNGC	2 cut(s)	443, 471
FspBI	CTAG	3 cut(s)	321, 329, 453
GluI	GCNGC	2 cut(s)	443, 471
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	4 cut(s)	23, 136, 596, 645
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	67, 721
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	2 cut(s)	92, 563
Hpy188I	TCNGA	5 cut(s)	125, 253, 355, 523, 554
Hpy188III	TCNNGA	3 cut(s)	228, 582, 590
Hpy8I	GTNNAC	2 cut(s)	92, 563
HpyAV	CCTTC	2 cut(s)	258, 369
HpyCH4III	ACNGT	3 cut(s)	308, 560, 715
HpyCH4IV	ACGT	2 cut(s)	565, 735
HpyCH4V	TGCA	2 cut(s)	239, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	4 cut(s)	354, 464, 482, 551
HpySE526I	ACGT	2 cut(s)	565, 735
Hsp92II	CATG	2 cut(s)	67, 721
Kpn2I	TCCGGA	1 cut(s)	581
Kzo9I	GATC	2 cut(s)	331, 578
LmnI	GCTCC	2 cut(s)	83, 391
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	2 cut(s)	535, 621
MaeI	CTAG	3 cut(s)	321, 329, 453
MaeII	ACGT	2 cut(s)	565, 735
MaeIII	GTNAC	2 cut(s)	66, 408
MalI	GATC	2 cut(s)	333, 580
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	2 cut(s)	331, 578
MboII	GAAGA	6 cut(s)	108, 270, 285, 363, 583, 682
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	578
MluCI	AATT	6 cut(s)	34, 71, 107, 267, 274, 684
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	135, 361, 391, 414, 459, 519, 586, 620
MroI	TCCGGA	1 cut(s)	581
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	716, 765
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	389, 663
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	389, 663
MwoI	GCNNNNNNNGC	1 cut(s)	631
NdeII	GATC	2 cut(s)	331, 578
NlaIII	CATG	2 cut(s)	67, 721
NlaIV	GGNNCC	2 cut(s)	597, 754
NmuCI	GTSAC	2 cut(s)	66, 408
NspI	RCATGY	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	444, 472
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PsiI	TTATAA	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	387, 661
PspGI	CCWGG	2 cut(s)	387, 661
PspN4I	GGNNCC	2 cut(s)	597, 754
PspPI	GGNCC	2 cut(s)	595, 643
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	716, 765
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	2 cut(s)	443, 471
Sau3AI	GATC	2 cut(s)	331, 578
Sau96I	GGNCC	2 cut(s)	595, 643
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	389, 663
SetI	ASST	9 cut(s)	88, 97, 353, 406, 415, 454, 480, 568, 738
SfaNI	GCATC	2 cut(s)	535, 621
SmiMI	CAYNNNNRTG	2 cut(s)	716, 765
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	6 cut(s)	34, 71, 107, 267, 274, 684
SsiI	CCGC	2 cut(s)	394, 443
SspMI	CTAG	3 cut(s)	321, 329, 453
StyD4I	CCNGG	2 cut(s)	387, 661
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	308, 560, 715
TaiI	ACGT	2 cut(s)	568, 738
TaqII	GACCGA	2 cut(s)	227, 273
TasI	AATT	6 cut(s)	34, 71, 107, 267, 274, 684
TauI	GCSGC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	502, 565
TseFI	GTSAC	2 cut(s)	66, 408
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	66, 408
TspDTI	ATGAA	2 cut(s)	108, 270
TspRI	CASTG	2 cut(s)	502, 565
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	3 cut(s)	321, 329, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.