Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011501

Physical Location & Seq

Genomic Coordinates Forward (+)

62227099 .. 62241616

Gene Structure 14518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG344400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCTTACCAATTCTTCCTTTGGCCTCTGATCACTGTTCTATCCGCCTTAATCCTCAGAATCTCTCTACAAATATTCACCGCCAGAAGCAACCGCCACCGCGCCGTCGCATTCTTCCACCCCTACACCAACGACGGCGGCGGCGGCGAGAGAATGCTCTGGTGCGCCGTCAAAGCCATCCAGGACGAAAACCCCAACCTTGACTGCGTCGTCTTCACCGGCGACCACGACTCCTCCCCTGACTCACTCACTTCCCGAGCCGTCGATCGCTTTGGAGTCAAACTACTTCACCCACCAAAGGTGGTGCTTCTGTACAAGCGGAAATGGATCGAGGAAGCCACCTACCCGAGATTGACTATGATCGGGCAGAGCCTGGGCTCTGTGTATCTATCATGGGAAGCATTGACCAAGTTCACTCCAGCTTACTATTTCGACACCAGTGGATACGCCTTTACTTACCCAATTGCGAGGCTATTTGGCTGCAGAGTCATCTGCTACACACATTACCCTACAATCAGCTTGGACATGCTCTCTCGGGTTCGCCAGCGGAGCTCCATGTACAACAATGATGACTTCATTGTTCGGAGCAATTGGTTATCGCACTGCAAGATTGTGTACTACAATGTGTTTAGCTGGATGTATGGGATTGTAGGCTCTTGTGCACATCTTGCCATGGTCAACTCTTCGTGGACTCAGTCCCATATACAGAAGCTGTGGAAGATTCCGCAGCGAACTAAGCGTGTCTACCCTCCTTGCGATACTTCTGGACTTCAGGTGCTTCCTTTGGAAAGATCAGCTGATCCTGCAAAAATCATATCTGTTGCTCAGTTTCGGCCAGAGAAGGCACATGGTCTCCAACTTGAAGCCTTTGCAGTTGCAATAGGGAAATTAGATGCACACTTGCCCAGACCTAAGCTGCAGTTTGTGGGTAGTTGTCGGAATAAATCAGATGAGGAAAGATTAGAACATCTGAAAAATAAAGCAATTGAGCTGAAGGTGGACGGGGACGTGGAATTTCATAAAAATGTCATGTACAGGTCTGTGCCGAGGATTTTATGTTCTGCATTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

357

Amino Acids

40.95

Weight (kDa)

9.3

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG11_N	PF15924	34 - 239	3.2e-87	ALG11 mannosyltransferase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40190
fragaria_vesca	FvH4_7g24680 FvH4_7g24680 FvH4_7g24680 FvH4_7g24680
malus_domestica	MD01G1154800.v1.1 MD07G1223900.v1.1
prunus_persica	Prupe.2G252400_v2.0.a1
pyrus_communis	pycom01g17220 pycom07g20250
rosa_chinensis	RchiOBHm_Chr1g0370541
rosa_laevigata	RLG00000027028
rosa_multiflora	Rmu_sc0002021.1_g000019 Rmu_sc0021895.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286460
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366700 Rh1BG330200 Rh1CG344400
rosa_wichuraiana	Rw1G032270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	102
AclWI	GGATC	2 cut(s)	335, 794
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	2 cut(s)	755, 1013
AfaI	GTAC	4 cut(s)	314, 560, 617, 1034
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	863
AjiI	CACGTC	1 cut(s)	1009
AjnI	CCWGG	2 cut(s)	180, 372
AloI	GAACNNNNNNTCC	2 cut(s)	1042, 1074
AluBI	AGCT	8 cut(s)	422, 519, 552, 633, 712, 797, 916, 991
AluI	AGCT	8 cut(s)	422, 519, 552, 633, 712, 797, 916, 991
Alw21I	GWGCWC	2 cut(s)	554, 664
Alw26I	GTCTC	1 cut(s)	857
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	335, 794
AlwNI	CAGNNNCTG	2 cut(s)	373, 712
Ama87I	CYCGRG	3 cut(s)	255, 346, 534
AoxI	GGCC	2 cut(s)	23, 833
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	480, 727, 916
ApoI	RAATTY	1 cut(s)	1013
AspLEI	GCGC	2 cut(s)	104, 167
AsuHPI	GGTGA	3 cut(s)	70, 208, 281
AvaI	CYCGRG	3 cut(s)	255, 346, 534
BaeGI	GKGCMC	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	380, 554
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	554, 664
BbvI	GCAGC	3 cut(s)	467, 739, 903
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	4 cut(s)	89, 151, 152, 245
BciT130I	CCWGG	2 cut(s)	182, 374
BciVI	GTATCC	1 cut(s)	437
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	857
BfmI	CTRYAG	2 cut(s)	481, 917
BfuI	GTATCC	1 cut(s)	437
BisI	GCNGC	6 cut(s)	139, 142, 145, 481, 728, 917
BlsI	GCNGC	6 cut(s)	140, 143, 146, 482, 729, 918
Bme1390I	CCNGG	2 cut(s)	182, 374
BmeT110I	CYCGRG	3 cut(s)	255, 346, 534
BmgBI	CACGTC	1 cut(s)	1009
BmrFI	CCNGG	2 cut(s)	182, 374
BmsI	GCATC	1 cut(s)	883
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	373, 672, 1046
BsaXI	ACNNNNNCTCC	6 cut(s)	215, 218, 245, 248, 837, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	182, 374
BseDI	CCNNGG	3 cut(s)	373, 672, 1046
BseGI	GGATG	2 cut(s)	177, 642
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	70, 707, 839
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	467, 739, 903
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	25, 835
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	554, 664
BsiHKCI	CYCGRG	3 cut(s)	255, 346, 534
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	682, 1019
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	857
BsmFI	GGGAC	2 cut(s)	682, 1019
BsmI	GAATGC	2 cut(s)	110, 159
BsnI	GGCC	2 cut(s)	25, 835
Bso31I	GGTCTC	1 cut(s)	857
BsoBI	CYCGRG	3 cut(s)	255, 346, 534
Bsp1286I	GDGCHC	3 cut(s)	380, 554, 664
Bsp1407I	TGTACA	3 cut(s)	312, 558, 1032
Bsp143I	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
Bsp19I	CCATGG	1 cut(s)	672
BspANI	GGCC	2 cut(s)	25, 835
BspCNI	CTCAG	3 cut(s)	69, 706, 838
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	485, 921
BspPI	GGATC	2 cut(s)	335, 794
BspTNI	GGTCTC	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	3 cut(s)	312, 558, 1032
BsrI	ACTGG	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	373, 672, 1046
BssMI	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	182, 374
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	688
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstAUI	TGTACA	3 cut(s)	312, 558, 1032
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	5 cut(s)	56, 693, 735, 825, 912
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	177, 642
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	104, 167
BstKTI	GATC	6 cut(s)	33, 268, 330, 363, 794, 802
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 173, 549, 668, 736, 803
BstNI	CCWGG	2 cut(s)	182, 374
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	180, 372
BstSFI	CTRYAG	2 cut(s)	481, 917
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	467, 739, 903
BstV2I	GAAGAC	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	25, 835
BtgI	CCRYGG	1 cut(s)	672
BtrI	CACGTC	1 cut(s)	1009
BtsCI	GGATG	2 cut(s)	177, 642
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	33, 445, 601
Cac8I	GCNNGC	1 cut(s)	545
CaiI	CAGNNNCTG	2 cut(s)	373, 712
CfoI	GCGC	2 cut(s)	104, 167
Cfr10I	RCCGGY	1 cut(s)	218
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	313, 559, 616, 1033
CviAII	CATG	6 cut(s)	393, 526, 556, 673, 848, 1030
CviQI	GTAC	4 cut(s)	313, 559, 616, 1033
DdeI	CTNAG	5 cut(s)	56, 693, 735, 825, 912
DpnI	GATC	6 cut(s)	32, 267, 329, 362, 793, 801
DpnII	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	2 cut(s)	380, 554
Eco31I	GGTCTC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	755, 1013
Eco88I	CYCGRG	3 cut(s)	255, 346, 534
EcoICRI	GAGCTC	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	180, 372
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	2 cut(s)	380, 554
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	6 cut(s)	396, 529, 559, 676, 851, 1033
FaqI	GGGAC	2 cut(s)	682, 1019
FatI	CATG	6 cut(s)	392, 525, 555, 672, 847, 1029
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	6 cut(s)	139, 142, 145, 481, 728, 917
FokI	GGATG	2 cut(s)	164, 649
FriOI	GRGCYC	2 cut(s)	380, 554
Fsp4HI	GCNGC	6 cut(s)	139, 142, 145, 481, 728, 917
GlaI	GCGC	2 cut(s)	103, 166
GluI	GCNGC	6 cut(s)	139, 142, 145, 481, 728, 917
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	25, 835
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	104, 167
Hin1II	CATG	6 cut(s)	396, 529, 559, 676, 851, 1033
Hin6I	GCGC	2 cut(s)	102, 165
HinP1I	GCGC	2 cut(s)	102, 165
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	7 cut(s)	60, 230, 242, 276, 486, 691, 721
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	70, 208, 281
Hpy166II	GTNNAC	7 cut(s)	414, 616, 662, 679, 690, 745, 1000
Hpy188I	TCNGA	6 cut(s)	30, 59, 585, 939, 949, 972
Hpy188III	TCNNGA	2 cut(s)	255, 765
Hpy8I	GTNNAC	7 cut(s)	414, 616, 662, 679, 690, 745, 1000
Hpy99I	CGWCG	4 cut(s)	110, 137, 212, 266
HpyAV	CCTTC	2 cut(s)	835, 988
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	9 cut(s)	483, 606, 662, 806, 872, 878, 896, 919, 1064
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 173, 549, 668, 736, 803
HpyF3I	CTNAG	5 cut(s)	56, 693, 735, 825, 912
HpySE526I	ACGT	1 cut(s)	1008
Hsp92II	CATG	6 cut(s)	396, 529, 559, 676, 851, 1033
HspAI	GCGC	2 cut(s)	102, 165
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
LmnI	GCTCC	3 cut(s)	549, 557, 585
Lsp1109I	GCAGC	3 cut(s)	467, 739, 903
LweI	GCATC	1 cut(s)	883
MaeII	ACGT	1 cut(s)	1008
MalI	GATC	6 cut(s)	32, 267, 329, 362, 793, 801
MboI	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
MboII	GAAGA	5 cut(s)	7, 106, 205, 675, 730
MfeI	CAATTG	3 cut(s)	462, 589, 984
MhlI	GDGCHC	3 cut(s)	380, 554, 664
MluCI	AATT	6 cut(s)	11, 462, 589, 887, 984, 1013
MlyI	GAGTC	5 cut(s)	224, 236, 285, 495, 685
MmeI	TCCRAC	2 cut(s)	880, 917
MnlI	CCTC	8 cut(s)	36, 65, 244, 325, 462, 759, 946, 1041
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	1023
MspA1I	CMGCKG	2 cut(s)	547, 797
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	182, 374
MunI	CAATTG	3 cut(s)	462, 589, 984
Mva1269I	GAATGC	2 cut(s)	110, 159
MvaI	CCWGG	2 cut(s)	182, 374
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	6 cut(s)	144, 173, 549, 668, 736, 803
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
NlaIII	CATG	6 cut(s)	396, 529, 559, 676, 851, 1033
NmeAIII	GCCGAG	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	529
PctI	GAATGC	2 cut(s)	110, 159
PfeI	GAWTC	2 cut(s)	60, 721
PflFI	GACNNNGTC	2 cut(s)	206, 694
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	140, 143, 146, 482, 729, 918
Ple19I	CGATCG	1 cut(s)	268
PleI	GAGTC	5 cut(s)	224, 236, 284, 494, 685
PpsI	GAGTC	5 cut(s)	224, 236, 284, 494, 685
Psp124BI	GAGCTC	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	180, 372
PspGI	CCWGG	2 cut(s)	180, 372
PstI	CTGCAG	2 cut(s)	485, 921
PstNI	CAGNNNCTG	2 cut(s)	373, 712
PsyI	GACNNNGTC	2 cut(s)	206, 694
PvuI	CGATCG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	4 cut(s)	314, 560, 617, 1034
RsaNI	GTAC	4 cut(s)	313, 559, 616, 1033
RseI	CAYNNNNRTG	1 cut(s)	1023
SacI	GAGCTC	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	6 cut(s)	139, 142, 145, 481, 728, 917
Sau3AI	GATC	6 cut(s)	30, 265, 327, 360, 791, 799
SchI	GAGTC	5 cut(s)	224, 236, 285, 495, 685
ScrFI	CCNGG	2 cut(s)	182, 374
SduI	GDGCHC	3 cut(s)	380, 554, 664
SfaNI	GCATC	1 cut(s)	883
SfcI	CTRYAG	2 cut(s)	481, 917
SgrAI	CRCCGGYG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	1023
Sse9I	AATT	6 cut(s)	11, 462, 589, 887, 984, 1013
SspI	AATATT	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	180, 372
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	3 cut(s)	264, 330, 432
TasI	AATT	6 cut(s)	11, 462, 589, 887, 984, 1013
TatI	WGTACW	4 cut(s)	312, 558, 615, 1032
TauI	GCSGC	3 cut(s)	141, 144, 147
TfiI	GAWTC	2 cut(s)	60, 721
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	3 cut(s)	40, 445, 608
TseI	GCWGC	3 cut(s)	480, 727, 916
TspDTI	ATGAA	2 cut(s)	565, 1007
TspRI	CASTG	3 cut(s)	40, 445, 608
Tth111I	GACNNNGTC	2 cut(s)	206, 694
VneI	GTGCAC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.