Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015459

Physical Location & Seq

Genomic Coordinates Forward (+)

16810905 .. 16812518

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTCTTCTCCGGCGACGATTCGTGAAACAATCAGTTAATTGCATAACATTCCTTCAAATCCTCGCCGAGCGATCCTTCTCCACCGTGAAGATTCCTCCAGGTCGTCGCAAAACCACCGAATTCGACAAACTTATCAACGAAGCTGGCAGCTCCGGCGATTTCGAGACCGTACGCCGTCTCCTAAACAACCGTATAGTTCTCGGATCTTTCAACACGAGCGACACATTCAAATTCCTCACCAACACCGCTTCATACTCCTCCTATTTAGAAGATCTCCGCCGCGTTTTGCCTCAGATCGACGGCGGTTTCTCGCGGAAAAACGCTTACGACATTTTAATCTCTCGTCTCTGTAAGCTCGGACGCATCGACGACGCTTTAATCGTTATCGGAGACATGTCTAACGGGAGATTAGGCTTAACGCCGTCGACATATCACCCGATCTTGTGCTCGCTCACGAGGAAGTACAAAATCGAAGAAGCTTGGAGAGTTGTTGAATCGATGAGATCCAAATCGGTTTCGATGGATGTGACGGCGTACAATTACTTCCTTACTTCGCATTGTTACGACGGCGAATTGGAATCGGCTAGCGAGGTGATGCGTAAGATTGAAGAAGACGGGAATTCGCCGGATTCGCGTAGCTACGACGCGCTTGTGCTCGGCGCGTGTAGGGCGGGTAAAGTGGAAGCGGCGATGGCGATATTGAGGAGGATGGAGGAGGATGGTGTGACTGTGTTGTACTCGACGCATGCGCACGTTATAACGGGGTTAGTGGAGGGAGGCTATTATGCGCTGGGTTTGGAGTTTGTGATGGCTTACGCCGGAAAAGATTTGAGGTTGGATAGTGAGAGTTTTGGTTTTTTGGCTGGTAAGCTTGTGAAGAGGAAGAGGTATGAAGAAGCGATGATTGTTGTGAAAGAGATGGTTATGAGAGGATTGAGAATGGGTGATGAATTGAGACAATTCTATGAAGGAAATGTGAGATACGATGATGATGATGAAGATAGCTTAGTACAATCAGAGAGAGAGTGTTACATTGAGCAGAAGCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4 PPR PPR_1 PPR_2 Tim44

Protein Analysis

351

Amino Acids

39.88

Weight (kDa)

6.2

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	107 - 200	3.2e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	176 - 224	1.4e-06	PPR repeat family
PPR_1	PF12854	209 - 239	6.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40240 AT3G56030
fragaria_vesca	FvH4_7g24790
pyrus_communis	pycom01g17280
rosa_chinensis	RchiOBHm_Chr1g0370651
rosa_laevigata	RLG00000027021
rosa_multiflora	Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286370
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700
rosa_wichuraiana	Rw1G032360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	753
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	5 cut(s)	285, 316, 637, 650, 665
AciI	CCGC	7 cut(s)	249, 280, 283, 306, 316, 674, 689
AclWI	GGATC	3 cut(s)	69, 214, 501
AcsI	RAATTY	3 cut(s)	122, 233, 622
AfaI	GTAC	5 cut(s)	174, 467, 539, 740, 1014
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	59, 214, 232, 497, 611
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	8 cut(s)	146, 153, 358, 482, 642, 874, 1008, 1048
AluI	AGCT	8 cut(s)	146, 153, 358, 482, 642, 874, 1008, 1048
Alw21I	GWGCWC	2 cut(s)	452, 660
Alw26I	GTCTC	6 cut(s)	9, 161, 185, 353, 387, 952
AlwI	GGATC	3 cut(s)	69, 214, 501
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	3 cut(s)	122, 233, 622
AspLEI	GCGC	4 cut(s)	652, 665, 754, 793
AsuHPI	GGTGA	4 cut(s)	232, 428, 607, 959
AsuNHI	GCTAGC	1 cut(s)	587
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
BauI	CACGAG	2 cut(s)	217, 457
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	2 cut(s)	452, 660
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	6 cut(s)	517, 688, 706, 716, 805, 916
BceAI	ACGGC	5 cut(s)	162, 319, 409, 549, 586
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	6 cut(s)	9, 161, 185, 353, 387, 952
BfaI	CTAG	1 cut(s)	588
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	151, 283, 690
BlsI	GCNGC	3 cut(s)	152, 284, 691
Bme1390I	CCNGG	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	375, 588
BmtI	GCTAGC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse8I	GATNNNNATC	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	500
BseGI	GGATG	3 cut(s)	532, 717, 727
BseJI	GATNNNNATC	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	3 cut(s)	250, 721, 731
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	1 cut(s)	793
Bsh1236I	CGCG	5 cut(s)	285, 316, 637, 650, 665
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	2 cut(s)	452, 660
BsiSI	CCGG	4 cut(s)	13, 156, 629, 822
BsiWI	CGTACG	1 cut(s)	172
BsmAI	GTCTC	6 cut(s)	9, 161, 185, 353, 387, 952
BsmBI	CGTCTC	2 cut(s)	185, 353
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	452, 660
Bsp143I	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
BspACI	CCGC	7 cut(s)	249, 280, 283, 306, 316, 674, 689
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	5 cut(s)	285, 316, 637, 650, 665
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	3 cut(s)	69, 214, 501
BspTNI	GGTCTC	1 cut(s)	161
BssMI	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
BssSI	CACGAG	2 cut(s)	217, 457
Bst2BI	CACGAG	2 cut(s)	217, 457
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	4 cut(s)	88, 172, 194, 733
Bst6I	CTCTTC	3 cut(s)	12, 875, 881
BstC8I	GCNNGC	4 cut(s)	148, 452, 589, 750
BstDEI	CTNAG	2 cut(s)	294, 1009
BstF5I	GGATG	3 cut(s)	532, 717, 727
BstFNI	CGCG	5 cut(s)	285, 316, 637, 650, 665
BstHHI	GCGC	4 cut(s)	652, 665, 754, 793
BstKTI	GATC	6 cut(s)	77, 209, 277, 300, 444, 509
BstMAI	GTCTC	6 cut(s)	9, 161, 185, 353, 387, 952
BstMBI	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 634, 671, 695
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	2 cut(s)	400, 752
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	5 cut(s)	285, 316, 637, 650, 665
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	3 cut(s)	206, 274, 506
BstYI	RGATCY	3 cut(s)	206, 274, 506
Bsu15I	ATCGAT	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	500
BtgZI	GCGATG	2 cut(s)	707, 917
BtsCI	GGATG	3 cut(s)	532, 717, 727
Cac8I	GCNNGC	4 cut(s)	148, 452, 589, 750
CfoI	GCGC	4 cut(s)	652, 665, 754, 793
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	4 cut(s)	372, 383, 656, 754
Csp6I	GTAC	5 cut(s)	173, 466, 538, 739, 1013
CviAII	CATG	2 cut(s)	397, 749
CviQI	GTAC	5 cut(s)	173, 466, 538, 739, 1013
DdeI	CTNAG	2 cut(s)	294, 1009
DpnI	GATC	6 cut(s)	76, 208, 276, 299, 443, 508
DpnII	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
Eam1104I	CTCTTC	3 cut(s)	12, 875, 881
EarI	CTCTTC	3 cut(s)	12, 875, 881
EciI	GGCGGA	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	161
EcoRI	GAATTC	2 cut(s)	122, 622
EcoRII	CCWGG	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	185, 353
FaeI	CATG	2 cut(s)	400, 752
FatI	CATG	2 cut(s)	396, 748
FauI	CCCGC	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	3 cut(s)	151, 283, 690
FokI	GGATG	3 cut(s)	539, 724, 734
Fsp4HI	GCNGC	3 cut(s)	151, 283, 690
FspAI	RTGCGCAY	1 cut(s)	753
FspBI	CTAG	1 cut(s)	588
FspI	TGCGCA	1 cut(s)	753
GlaI	GCGC	4 cut(s)	651, 664, 753, 792
GluI	GCNGC	3 cut(s)	151, 283, 690
GsaI	CCCAGC	1 cut(s)	797
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	4 cut(s)	13, 156, 629, 822
HgaI	GACGC	4 cut(s)	372, 383, 656, 754
HhaI	GCGC	4 cut(s)	652, 665, 754, 793
Hin1II	CATG	2 cut(s)	400, 752
Hin6I	GCGC	4 cut(s)	650, 663, 752, 791
HinP1I	GCGC	4 cut(s)	650, 663, 752, 791
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	3 cut(s)	480, 872, 1046
HinfI	GANTC	5 cut(s)	21, 94, 497, 581, 632
HpaII	CCGG	4 cut(s)	13, 156, 629, 822
HphI	GGTGA	4 cut(s)	232, 428, 607, 959
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	5 cut(s)	206, 297, 362, 392, 1021
Hpy188III	TCNNGA	3 cut(s)	25, 166, 457
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	9 cut(s)	21, 111, 305, 374, 377, 430, 572, 650, 748
HpyAV	CCTTC	3 cut(s)	65, 88, 965
HpyCH4III	ACNGT	4 cut(s)	88, 172, 194, 733
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 634, 671, 695
HpyF3I	CTNAG	2 cut(s)	294, 1009
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	2 cut(s)	400, 752
HspAI	GCGC	4 cut(s)	650, 663, 752, 791
Kzo9I	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	26, 87, 114, 132, 169, 642, 779, 835, 852
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	375, 588
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	4 cut(s)	529, 563, 727, 1031
MalI	GATC	6 cut(s)	76, 208, 276, 299, 443, 508
MboI	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
MboII	GAAGA	9 cut(s)	103, 284, 488, 623, 626, 892, 898, 908, 1013
MflI	RGATCY	3 cut(s)	206, 274, 506
MhlI	GDGCHC	2 cut(s)	452, 660
MluCI	AATT	9 cut(s)	40, 122, 233, 541, 575, 622, 953, 962, 1051
MmeI	TCCRAC	1 cut(s)	819
MseI	TTAA	5 cut(s)	39, 338, 380, 419, 1050
MspI	CCGG	4 cut(s)	13, 156, 629, 822
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	5 cut(s)	285, 316, 637, 650, 665
MwoI	GCNNNNNNNGC	4 cut(s)	156, 634, 671, 695
NdeII	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	2 cut(s)	400, 752
NmeAIII	GCCGAG	2 cut(s)	94, 639
NmuCI	GTSAC	2 cut(s)	529, 727
NsbI	TGCGCA	1 cut(s)	753
NspI	RCATGY	2 cut(s)	400, 752
PaeI	GCATGC	1 cut(s)	752
PciI	ACATGT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 381
PfeI	GAWTC	5 cut(s)	21, 94, 497, 581, 632
Pfl23II	CGTACG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	152, 284, 691
PscI	ACATGT	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	100
PspLI	CGTACG	1 cut(s)	172
PsuI	RGATCY	3 cut(s)	206, 274, 506
RsaI	GTAC	5 cut(s)	174, 467, 539, 740, 1014
RsaNI	GTAC	5 cut(s)	173, 466, 538, 739, 1013
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	5 cut(s)	39, 338, 380, 419, 1050
SatI	GCNGC	3 cut(s)	151, 283, 690
Sau3AI	GATC	6 cut(s)	74, 206, 274, 297, 441, 506
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	452, 660
SfaNI	GCATC	2 cut(s)	375, 588
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	9 cut(s)	40, 122, 233, 541, 575, 622, 953, 962, 1051
SsiI	CCGC	7 cut(s)	249, 280, 283, 306, 316, 674, 689
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	4 cut(s)	88, 172, 194, 733
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	9 cut(s)	126, 165, 300, 369, 428, 474, 500, 521, 743
TasI	AATT	9 cut(s)	40, 122, 233, 541, 575, 622, 953, 962, 1051
TatI	WGTACW	3 cut(s)	465, 738, 1012
TauI	GCSGC	2 cut(s)	285, 692
TfiI	GAWTC	5 cut(s)	21, 94, 497, 581, 632
Tru1I	TTAA	5 cut(s)	39, 338, 380, 419, 1050
Tru9I	TTAA	5 cut(s)	39, 338, 380, 419, 1050
TseFI	GTSAC	2 cut(s)	529, 727
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	2 cut(s)	529, 727
TspDTI	ATGAA	5 cut(s)	243, 909, 966, 984, 1014
XapI	RAATTY	3 cut(s)	122, 233, 622
XceI	RCATGY	2 cut(s)	400, 752
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.