Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015459

Physical Location & Seq

Genomic Coordinates Reverse (-)

7721502 .. 7722503

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTCTTCCTTCGTAAAATCCCCCACAAACCCCAAAATTCCAAATCAATCCTCACCGTCGCCGCCCGTTTCTGCACAACCCAAATCCCTACCGTCAATTCTTTTCCCGATGAGCCCACCGCCGCCTACTACGACCTCCTGGTCAACGCCGCCGGCGAAACCAGAGACTTCGCCAACCTCCAGTACCTCCTCAACAAGCGCGTGAAGGACCACTGCTTCAACACCTCCAACACCTTCAAGTTCATCACCAACACCGAGGCTTCCCTCACCGTACTCCCCGATCTCTCTCGGACCCTCGCGCGTCTCGACAAAGGGTTCACGCGCAAGAGCGCGTACGACTCGCTCATCTCCCGCCTCTGCAAGCTGGAGCTAGTCGATGAGGCACTGCGCGTGGTGGACCTGATGGCGCGTGAGGATTTCGGCCTGAACGCGTGTACCTTCCACCCGATTCTCAACGTGCTTACAAAGAAGGGGAAGATGGAAGAGGCGTGGCGCGTGGTGGAGCTGATGCGGAAATCCGGAGCTCCGCCGGATCTGACGTGTTATAATTATCTTCTCATGGCGTATTGCTTCTCCGGAGATTTGGATCCGGCGGCCGGAGTTTTGTGTACTATGGAGGAGGAGGGGATGAAGGCGGACACGCGTACGTACGACGCGCTGGTGCTTGGAGCGTGCAAGGTGGGGCAGGTGGAGGGGGCTATGGTGCTGCTGAGGAGGATGGTGGATGATGGAGTTCCGGTTCTGCTGTCGACCCACGTGTACGTTATTGATTCGCTGTTGAGTCGGGGGTTCTACGCGGAAGCGGTAAAGTTTGTGAGGGGTTTTAGCGGGAAGGACACTTGGTTGGACAAGGAGAGTTTTGGGAGTCTGGCTAAGAGGCTCATTAAGCTCGAGAGGCTTGGTGAGGCGAAGGAGGTCTTGGATGAAATGCGTGAAAGGGGTTTAGTTATTGGAGATAAATTGAAGGATTATTATGAATCGAAGATTACAAATAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

334

Amino Acids

37.51

Weight (kDa)

8.3

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	108 - 200	7.2e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	124 - 243	2.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	130 - 189	7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	143 - 190	4.4e-09	PPR repeat family
TPR_24	PF23276	166 - 270	6.8e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	177 - 226	2.5e-08	PPR repeat family
PPR_1	PF12854	209 - 241	6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40240 AT3G56030
fragaria_vesca	FvH4_7g24790
pyrus_communis	pycom01g17280
rosa_chinensis	RchiOBHm_Chr1g0370651
rosa_laevigata	RLG00000027021
rosa_multiflora	Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286370
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700
rosa_wichuraiana	Rw1G032360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AarI	CACCTGC	1 cut(s)	676
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	749
AccIII	TCCGGA	2 cut(s)	518, 575
AclWI	GGATC	3 cut(s)	540, 581, 594
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	37
AcvI	CACGTG	1 cut(s)	757
AfaI	GTAC	8 cut(s)	185, 273, 335, 436, 610, 646, 650, 761
AfiI	CCNNNNNNNGG	1 cut(s)	596
AflIII	ACRYGT	4 cut(s)	429, 539, 641, 756
AgsI	TTSAA	3 cut(s)	220, 238, 964
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AloI	GAACNNNNNNTCC	2 cut(s)	723, 755
AluBI	AGCT	5 cut(s)	364, 370, 505, 524, 889
AluI	AGCT	5 cut(s)	364, 370, 505, 524, 889
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	159, 308
AlwI	GGATC	3 cut(s)	540, 581, 594
Ama87I	CYCGRG	1 cut(s)	890
Aor13HI	TCCGGA	2 cut(s)	518, 575
AoxI	GGCC	2 cut(s)	421, 594
ApeKI	GCWGC	1 cut(s)	706
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	8 cut(s)	201, 301, 324, 332, 390, 409, 495, 658
AspS9I	GGNCC	3 cut(s)	208, 291, 397
AsuHPI	GGTGA	4 cut(s)	46, 238, 259, 914
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	3 cut(s)	208, 291, 397
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	2 cut(s)	117, 526
BbrPI	CACGTG	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	4 cut(s)	397, 472, 712, 722
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	159, 308
BfaI	CTAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	5 cut(s)	63, 123, 150, 594, 707
BlsI	GCNGC	5 cut(s)	64, 124, 151, 595, 708
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	3 cut(s)	208, 291, 397
BmeT110I	CYCGRG	1 cut(s)	890
BmgBI	CACGTC	1 cut(s)	540
BmgT120I	GGNCC	3 cut(s)	208, 291, 397
BmiI	GGNNCC	2 cut(s)	293, 588
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	164, 386
Bpu10I	CCTNAGC	1 cut(s)	710
BsaAI	YACGTR	2 cut(s)	648, 757
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	3 cut(s)	518, 575, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	2 cut(s)	518, 575
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	4 cut(s)	633, 723, 730, 928
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	4 cut(s)	179, 632, 635, 727
BseX3I	CGGCCG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	693
BsgI	GTGCAG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	423, 596
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	7 cut(s)	153, 519, 530, 576, 590, 597, 737
BsiWI	CGTACG	3 cut(s)	333, 644, 648
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmAI	GTCTC	2 cut(s)	159, 308
BsmBI	CGTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	423, 596
BsoBI	CYCGRG	1 cut(s)	890
Bsp1286I	GDGCHC	2 cut(s)	117, 526
Bsp13I	TCCGGA	2 cut(s)	518, 575
Bsp143I	GATC	3 cut(s)	280, 532, 586
BspANI	GGCC	2 cut(s)	423, 596
BspCNI	CTCAG	1 cut(s)	702
BspEI	TCCGGA	2 cut(s)	518, 575
BspLI	GGNNCC	2 cut(s)	293, 588
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	540, 581, 594
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	280, 532, 586
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	58, 94, 271
Bst6I	CTCTTC	1 cut(s)	477
BstBAI	YACGTR	2 cut(s)	648, 757
BstC8I	GCNNGC	3 cut(s)	154, 362, 673
BstDEI	CTNAG	2 cut(s)	710, 873
BstF5I	GGATG	4 cut(s)	633, 723, 730, 928
BstHHI	GCGC	8 cut(s)	201, 301, 324, 332, 390, 409, 495, 658
BstKTI	GATC	3 cut(s)	283, 535, 589
BstMAI	GTCTC	2 cut(s)	159, 308
BstMBI	GATC	3 cut(s)	280, 532, 586
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	2 cut(s)	886, 895
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSNI	TACGTA	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	532, 586
BstYI	RGATCY	2 cut(s)	532, 586
BstZI	CGGCCG	1 cut(s)	594
BsuRI	GGCC	2 cut(s)	423, 596
BtrI	CACGTC	1 cut(s)	540
BtsCI	GGATG	4 cut(s)	633, 723, 730, 928
BtsI	GCAGTG	2 cut(s)	211, 383
BtsIMutI	CAGTG	2 cut(s)	211, 383
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	154, 362, 673
CfoI	GCGC	8 cut(s)	201, 301, 324, 332, 390, 409, 495, 658
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	208, 291, 397
CseI	GACGC	2 cut(s)	290, 662
Csp6I	GTAC	8 cut(s)	184, 272, 334, 435, 609, 645, 649, 760
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	8 cut(s)	184, 272, 334, 435, 609, 645, 649, 760
DdeI	CTNAG	2 cut(s)	710, 873
DpnI	GATC	3 cut(s)	282, 534, 588
DpnII	GATC	3 cut(s)	280, 532, 586
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	594
EagI	CGGCCG	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	2 cut(s)	516, 650
Ecl136II	GAGCTC	1 cut(s)	524
EclXI	CGGCCG	1 cut(s)	594
Eco105I	TACGTA	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	117, 526
Eco47I	GGWCC	3 cut(s)	208, 291, 397
Eco52I	CGGCCG	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	524
Eco72I	CACGTG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	890
EcoICRI	GAGCTC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	117, 526
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	562
FaiI	YATR	5 cut(s)	546, 560, 614, 701, 975
FalI	AAGNNNNNCTT	2 cut(s)	902, 934
FatI	CATG	1 cut(s)	558
FauI	CCCGC	2 cut(s)	359, 821
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	5 cut(s)	63, 123, 150, 594, 707
FokI	GGATG	4 cut(s)	640, 730, 737, 935
FriOI	GRGCYC	2 cut(s)	117, 526
Fsp4HI	GCNGC	5 cut(s)	63, 123, 150, 594, 707
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	8 cut(s)	200, 300, 323, 331, 389, 408, 494, 657
GluI	GCNGC	5 cut(s)	63, 123, 150, 594, 707
GsuI	CTGGAG	2 cut(s)	164, 386
HaeIII	GGCC	2 cut(s)	423, 596
HapII	CCGG	7 cut(s)	153, 519, 530, 576, 590, 597, 737
HgaI	GACGC	2 cut(s)	290, 662
HhaI	GCGC	8 cut(s)	201, 301, 324, 332, 390, 409, 495, 658
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	8 cut(s)	199, 299, 322, 330, 388, 407, 493, 656
HinP1I	GCGC	8 cut(s)	199, 299, 322, 330, 388, 407, 493, 656
HincII	GTYRAC	2 cut(s)	145, 750
HindII	GTYRAC	2 cut(s)	145, 750
HinfI	GANTC	6 cut(s)	338, 448, 770, 781, 865, 977
HpaII	CCGG	7 cut(s)	153, 519, 530, 576, 590, 597, 737
HphI	GGTGA	4 cut(s)	46, 238, 259, 914
Hpy166II	GTNNAC	7 cut(s)	145, 318, 397, 435, 609, 750, 760
Hpy188I	TCNGA	2 cut(s)	291, 537
Hpy188III	TCNNGA	5 cut(s)	107, 305, 519, 576, 892
Hpy8I	GTNNAC	7 cut(s)	145, 318, 397, 435, 609, 750, 760
Hpy99I	CGWCG	2 cut(s)	62, 656
HpyAV	CCTTC	9 cut(s)	20, 199, 244, 448, 463, 625, 826, 904, 958
HpyCH4III	ACNGT	3 cut(s)	58, 94, 271
HpyCH4IV	ACGT	5 cut(s)	456, 539, 647, 756, 762
HpyCH4V	TGCA	3 cut(s)	75, 360, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	886, 895
HpyF3I	CTNAG	2 cut(s)	710, 873
HpySE526I	ACGT	5 cut(s)	456, 539, 647, 756, 762
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	8 cut(s)	199, 299, 322, 330, 388, 407, 493, 656
Kpn2I	TCCGGA	2 cut(s)	518, 575
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	280, 532, 586
LmnI	GCTCC	5 cut(s)	367, 502, 521, 529, 668
Lsp1109I	GCAGC	1 cut(s)	693
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	5 cut(s)	456, 539, 647, 756, 762
MalI	GATC	3 cut(s)	282, 534, 588
MboI	GATC	3 cut(s)	280, 532, 586
MboII	GAAGA	4 cut(s)	487, 494, 545, 994
MflI	RGATCY	2 cut(s)	532, 586
MhlI	GDGCHC	2 cut(s)	117, 526
MluCI	AATT	4 cut(s)	37, 97, 547, 959
MluI	ACGCGT	2 cut(s)	429, 641
MlyI	GAGTC	3 cut(s)	332, 790, 874
MmeI	TCCRAC	2 cut(s)	252, 825
MreI	CGCCGGCG	1 cut(s)	152
MroI	TCCGGA	2 cut(s)	518, 575
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	1 cut(s)	885
MspI	CCGG	7 cut(s)	153, 519, 530, 576, 590, 597, 737
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	886, 895
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	3 cut(s)	280, 532, 586
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	2 cut(s)	293, 588
PaeR7I	CTCGAG	1 cut(s)	890
PaqCI	CACCTGC	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 303
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	448, 770, 977
Pfl23II	CGTACG	3 cut(s)	333, 644, 648
PkrI	GCNGC	5 cut(s)	64, 124, 151, 595, 708
PleI	GAGTC	3 cut(s)	332, 789, 873
PmaCI	CACGTG	1 cut(s)	757
PmlI	CACGTG	1 cut(s)	757
PpsI	GAGTC	3 cut(s)	332, 789, 873
Ppu21I	YACGTR	2 cut(s)	648, 757
PsiI	TTATAA	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	3 cut(s)	333, 644, 648
PspN4I	GGNNCC	2 cut(s)	293, 588
PspPI	GGNCC	3 cut(s)	208, 291, 397
PsuI	RGATCY	2 cut(s)	532, 586
RsaI	GTAC	8 cut(s)	185, 273, 335, 436, 610, 646, 650, 761
RsaNI	GTAC	8 cut(s)	184, 272, 334, 435, 609, 645, 649, 760
SacI	GAGCTC	1 cut(s)	526
SalI	GTCGAC	1 cut(s)	748
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	5 cut(s)	63, 123, 150, 594, 707
Sau3AI	GATC	3 cut(s)	280, 532, 586
Sau96I	GGNCC	3 cut(s)	208, 291, 397
SchI	GAGTC	3 cut(s)	332, 790, 874
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	117, 526
SfaNI	GCATC	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	890
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	3 cut(s)	208, 291, 397
SlaI	CTCGAG	1 cut(s)	890
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SnaBI	TACGTA	1 cut(s)	648
Sse9I	AATT	4 cut(s)	37, 97, 547, 959
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	58, 94, 271
TaiI	ACGT	5 cut(s)	459, 542, 650, 759, 765
TaqI	TCGA	5 cut(s)	306, 375, 749, 891, 980
TasI	AATT	4 cut(s)	37, 97, 547, 959
TatI	WGTACW	1 cut(s)	608
TauI	GCSGC	4 cut(s)	65, 125, 152, 596
TfiI	GAWTC	3 cut(s)	448, 770, 977
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	2 cut(s)	218, 390
TseI	GCWGC	1 cut(s)	706
TspDTI	ATGAA	4 cut(s)	232, 644, 939, 990
TspRI	CASTG	2 cut(s)	218, 390
VpaK11BI	GGWCC	3 cut(s)	208, 291, 397
XapI	RAATTY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.