Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015459

Physical Location & Seq

Genomic Coordinates Forward (+)

16636148 .. 16637146

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCGCTCCTCCGTCGAATCCCCCATAAACCCCAAAATTCCCGATCTGTCGTCACCTTCGCCGCCCGTTTCTTCTCGATCCAAAACCCTACCCTAAGCCCTTTCCCTGACGTGCCCACCACCGCCTACTACGACAACCTGGTCATCGCCGCTGGCCACTCCAGAGACTTCGACAACCTCCACTACCTCCTCAACAAGCGCGTCAAGGACCACTGCTTCAACACCACCAACACCTTCAGGTTCCTCACCAACACCGACTCCTCCCTCTCCGTACTCGACGACCTCACCAAAACCCTAGCGCGTCTCGACCGGGGGTTCACCCGCAAGAGCGCGTACGACTCGCTCATCGCGCGTCTCTGTAAGATCGAGAGGGTCGATGAGGCGCTGCGCGTGGTGGATTTTATGGCGCGTGGCGACTACGGCCTCAACGCCTGCACCTTTCACCCGATTCTCAATGTGGTTACCCGGAAGAAGAGGATGGACGACGCGTGGGGGGTGGTGGATCTGATGAGGAGAGTCGGAGCACCGCCGGATGTGCCGGCGTTTAATTATCTGCTGATGGCGTACTGTTTCTCCGGAGATTTGGAAGCGACGGCCGGAGTGCTGACGAGGATGGAAGAAGAGGGGATGAGGGCGGACACGCGCACGTACGACGCGCTGGTTCTTGGCGCGTGTAAGGCAGGGAAGGTGGAGGGGGCTCTGGTGCTGATAAGGAGGATGGTGGACGATGAGGTGCCGGCGCTGCTGTCGACACACGTGTACCTCATTGATTCGCTGCTGGGAAAGGGATTTTACGCGCAGGCGGTAAAGTTTGTGAGGAGTTTTAGCGGGAGGGACACGTGGCTGGACACGGAGAGTTTTGGGAGCTTGGCCAAGAAGCTGATTAAGTTGAGGAGGTTTAAGGAGGCTAAACTGGTTTTTGAGGAAATGAATGCGAGGGGTTTGGTGATTGGTGATAAATTGAAGGATTCTTATGAGAAGATTAAGGATTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

333

Amino Acids

37.6

Weight (kDa)

9.05

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	108 - 201	3.4e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	123 - 231	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	177 - 226	5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40240 AT3G56030
fragaria_vesca	FvH4_7g24790
pyrus_communis	pycom01g17280
rosa_chinensis	RchiOBHm_Chr1g0370651
rosa_laevigata	RLG00000027021
rosa_multiflora	Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286370
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700
rosa_wichuraiana	Rw1G032360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	749
AccIII	TCCGGA	1 cut(s)	575
AciI	CCGC	8 cut(s)	63, 123, 150, 322, 527, 635, 803, 828
AclWI	GGATC	2 cut(s)	73, 510
AcoI	YGGCCR	3 cut(s)	154, 594, 870
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	220
AcvI	CACGTG	2 cut(s)	757, 840
AfaI	GTAC	5 cut(s)	273, 335, 566, 650, 761
AflIII	ACRYGT	4 cut(s)	486, 754, 756, 837
AgsI	TTSAA	2 cut(s)	220, 964
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	867, 880
AluI	AGCT	2 cut(s)	867, 880
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	159, 308, 359
AlwI	GGATC	2 cut(s)	73, 510
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	4 cut(s)	154, 421, 594, 870
ApeKI	GCWGC	3 cut(s)	385, 742, 775
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	2 cut(s)	311, 466
AsuHPI	GGTGA	7 cut(s)	46, 238, 277, 310, 434, 958, 965
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	743, 776
BalI	TGGCCA	2 cut(s)	156, 872
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	700
BbrPI	CACGTG	2 cut(s)	757, 840
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	372, 729, 762
BccI	CCATC	4 cut(s)	472, 553, 607, 712
BceAI	ACGGC	2 cut(s)	436, 609
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	311, 466
BcoDI	GTCTC	3 cut(s)	159, 308, 359
BfaI	CTAG	1 cut(s)	296
BfoI	RGCGCY	2 cut(s)	386, 743
BisI	GCNGC	5 cut(s)	63, 150, 386, 743, 776
BlsI	GCNGC	5 cut(s)	64, 151, 387, 744, 777
Bme1390I	CCNGG	3 cut(s)	140, 311, 466
Bme18I	GGWCC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	242, 735
BmrFI	CCNGG	3 cut(s)	140, 311, 466
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	311, 466
BsaAI	YACGTR	3 cut(s)	648, 757, 840
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 557, 587
Bse118I	RCCGGY	2 cut(s)	538, 736
Bse1I	ACTGG	1 cut(s)	918
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	5 cut(s)	483, 538, 618, 633, 723
BseNI	ACTGG	1 cut(s)	918
BseRI	GAGGAG	5 cut(s)	179, 250, 526, 832, 907
BseSI	GKGCMC	1 cut(s)	117
BseX3I	CGGCCG	1 cut(s)	594
BseXI	GCAGC	3 cut(s)	372, 729, 762
BseYI	CCCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	418
Bsh1285I	CGRYCG	2 cut(s)	310, 597
BshFI	GGCC	4 cut(s)	156, 423, 596, 872
BshNI	GGYRCC	1 cut(s)	733
BsiEI	CGRYCG	2 cut(s)	310, 597
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	7 cut(s)	310, 466, 530, 539, 576, 597, 737
BsiWI	CGTACG	2 cut(s)	333, 648
BslFI	GGGAC	1 cut(s)	848
BsmAI	GTCTC	3 cut(s)	159, 308, 359
BsmBI	CGTCTC	2 cut(s)	308, 359
BsmFI	GGGAC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	4 cut(s)	156, 423, 596, 872
Bsp1286I	GDGCHC	3 cut(s)	117, 526, 700
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	44, 78, 363, 502
BspACI	CCGC	8 cut(s)	63, 123, 150, 322, 527, 635, 803, 828
BspANI	GGCC	4 cut(s)	156, 423, 596, 872
BspEI	TCCGGA	1 cut(s)	575
BspLI	GGNNCC	2 cut(s)	242, 735
BspPI	GGATC	2 cut(s)	73, 510
BspT107I	GGYRCC	1 cut(s)	733
BsrFI	RCCGGY	2 cut(s)	538, 736
BsrI	ACTGG	1 cut(s)	918
BssAI	RCCGGY	2 cut(s)	538, 736
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	44, 78, 363, 502
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	467, 615
BstBAI	YACGTR	3 cut(s)	648, 757, 840
BstC8I	GCNNGC	5 cut(s)	154, 433, 540, 738, 801
BstDEI	CTNAG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	460
BstF5I	GGATG	5 cut(s)	483, 538, 618, 633, 723
BstH2I	RGCGCY	2 cut(s)	386, 743
BstKTI	GATC	4 cut(s)	47, 81, 366, 505
BstMAI	GTCTC	3 cut(s)	159, 308, 359
BstMBI	GATC	4 cut(s)	44, 78, 363, 502
BstMCI	CGRYCG	2 cut(s)	310, 597
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 420, 535, 677, 742
BstNI	CCWGG	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	460
BstSCI	CCNGG	3 cut(s)	138, 309, 464
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	372, 729, 762
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BstZI	CGGCCG	1 cut(s)	594
BsuRI	GGCC	4 cut(s)	156, 423, 596, 872
BtgZI	GCGATG	2 cut(s)	130, 331
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	5 cut(s)	483, 538, 618, 633, 723
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	5 cut(s)	154, 433, 540, 738, 801
Cfr10I	RCCGGY	2 cut(s)	538, 736
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	5 cut(s)	190, 290, 341, 494, 662
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	5 cut(s)	272, 334, 565, 649, 760
CviQI	GTAC	5 cut(s)	272, 334, 565, 649, 760
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	4 cut(s)	46, 80, 365, 504
DpnII	GATC	4 cut(s)	44, 78, 363, 502
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	3 cut(s)	154, 594, 870
EagI	CGGCCG	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	467, 615
EarI	CTCTTC	2 cut(s)	467, 615
EciI	GGCGGA	1 cut(s)	650
EclXI	CGGCCG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	220
Eco72I	CACGTG	2 cut(s)	757, 840
Eco91I	GGTNACC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	700
Esp3I	CGTCTC	2 cut(s)	308, 359
FaiI	YATR	4 cut(s)	27, 404, 975, 993
FaqI	GGGAC	1 cut(s)	848
FauI	CCCGC	2 cut(s)	329, 821
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	5 cut(s)	63, 150, 386, 743, 776
FokI	GGATG	5 cut(s)	490, 545, 625, 640, 730
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	5 cut(s)	63, 150, 386, 743, 776
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	5 cut(s)	63, 150, 386, 743, 776
GsaI	CCCAGC	1 cut(s)	782
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	2 cut(s)	386, 743
HaeIII	GGCC	4 cut(s)	156, 423, 596, 872
HapII	CCGG	7 cut(s)	310, 466, 530, 539, 576, 597, 737
HgaI	GACGC	5 cut(s)	190, 290, 341, 494, 662
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	7 cut(s)	18, 257, 338, 448, 516, 770, 968
HpaII	CCGG	7 cut(s)	310, 466, 530, 539, 576, 597, 737
HphI	GGTGA	7 cut(s)	46, 238, 277, 310, 434, 958, 965
Hpy166II	GTNNAC	4 cut(s)	318, 724, 750, 760
Hpy188I	TCNGA	2 cut(s)	507, 521
Hpy188III	TCNNGA	6 cut(s)	42, 76, 162, 305, 367, 576
Hpy8I	GTNNAC	4 cut(s)	318, 724, 750, 760
Hpy99I	CGWCG	5 cut(s)	18, 281, 488, 595, 656
HpyAV	CCTTC	4 cut(s)	67, 244, 679, 958
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	4 cut(s)	111, 647, 756, 839
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 420, 535, 677, 742
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	4 cut(s)	111, 647, 756, 839
Kpn2I	TCCGGA	1 cut(s)	575
KroI	GCCGGC	2 cut(s)	538, 736
KroNI	GCCGGC	2 cut(s)	540, 738
Kzo9I	GATC	4 cut(s)	44, 78, 363, 502
LmnI	GCTCC	3 cut(s)	12, 521, 864
Lsp1109I	GCAGC	3 cut(s)	372, 729, 762
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	4 cut(s)	111, 647, 756, 839
MaeIII	GTNAC	2 cut(s)	52, 460
MalI	GATC	4 cut(s)	46, 80, 365, 504
MboI	GATC	4 cut(s)	44, 78, 363, 502
MboII	GAAGA	6 cut(s)	64, 481, 484, 629, 632, 991
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	3 cut(s)	117, 526, 700
MlsI	TGGCCA	2 cut(s)	156, 872
MluCI	AATT	3 cut(s)	37, 547, 959
MluI	ACGCGT	1 cut(s)	486
MluNI	TGGCCA	2 cut(s)	156, 872
MlyI	GAGTC	3 cut(s)	251, 332, 525
MmeI	TCCRAC	1 cut(s)	499
Mox20I	TGGCCA	2 cut(s)	156, 872
MroI	TCCGGA	1 cut(s)	575
MroNI	GCCGGC	2 cut(s)	538, 736
MscI	TGGCCA	2 cut(s)	156, 872
MseI	TTAA	5 cut(s)	546, 885, 900, 984, 997
Msp20I	TGGCCA	2 cut(s)	156, 872
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	7 cut(s)	310, 466, 530, 539, 576, 597, 737
MspR9I	CCNGG	3 cut(s)	140, 311, 466
MteI	GCGCNGCGC	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	349, 420, 535, 677, 742
NaeI	GCCGGC	2 cut(s)	540, 738
NciI	CCSGG	2 cut(s)	311, 466
NdeII	GATC	4 cut(s)	44, 78, 363, 502
NgoMIV	GCCGGC	2 cut(s)	538, 736
NlaIV	GGNNCC	2 cut(s)	242, 735
NmuCI	GTSAC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	937
PdiI	GCCGGC	2 cut(s)	540, 738
PfeI	GAWTC	4 cut(s)	18, 448, 770, 968
Pfl23II	CGTACG	2 cut(s)	333, 648
PkrI	GCNGC	5 cut(s)	64, 151, 387, 744, 777
PleI	GAGTC	3 cut(s)	251, 332, 524
PmaCI	CACGTG	2 cut(s)	757, 840
PmlI	CACGTG	2 cut(s)	757, 840
PpsI	GAGTC	3 cut(s)	251, 332, 524
Ppu21I	YACGTR	3 cut(s)	648, 757, 840
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	2 cut(s)	757, 840
PspEI	GGTNACC	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	2 cut(s)	333, 648
PspN4I	GGNNCC	2 cut(s)	242, 735
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	5 cut(s)	273, 335, 566, 650, 761
RsaNI	GTAC	5 cut(s)	272, 334, 565, 649, 760
SalI	GTCGAC	1 cut(s)	748
SaqAI	TTAA	5 cut(s)	546, 885, 900, 984, 997
SatI	GCNGC	5 cut(s)	63, 150, 386, 743, 776
Sau3AI	GATC	4 cut(s)	44, 78, 363, 502
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	3 cut(s)	251, 332, 525
ScrFI	CCNGG	3 cut(s)	140, 311, 466
SduI	GDGCHC	3 cut(s)	117, 526, 700
SexAI	ACCWGGT	1 cut(s)	138
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	37, 547, 959
SsiI	CCGC	8 cut(s)	63, 123, 150, 322, 527, 635, 803, 828
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	138, 309, 464
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	4 cut(s)	114, 650, 759, 842
TaqI	TCGA	8 cut(s)	16, 77, 171, 276, 306, 366, 375, 749
TasI	AATT	3 cut(s)	37, 547, 959
TauI	GCSGC	2 cut(s)	65, 152
TfiI	GAWTC	4 cut(s)	18, 448, 770, 968
Tru1I	TTAA	5 cut(s)	546, 885, 900, 984, 997
Tru9I	TTAA	5 cut(s)	546, 885, 900, 984, 997
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	385, 742, 775
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	944
TspGWI	ACGGA	2 cut(s)	259, 866
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.