Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015459

Physical Location & Seq

Genomic Coordinates Forward (+)

20791173 .. 20792532

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTCCGGCTTAAACCCCTAATCTCCGTTGACCTGAATCAGACGATGTCTCTTCTCCGACGATTCGTTAAAGAAGCGAACAATTCCAGATTTCTGCTTCAATCAATCTCGGGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCGTCGTACTTGCGTCGAATTCGATAACCTCATCTTCAAAGCCGGAAGCTCCGGCGATTTCGAAGCCGTACGTCGTCTCCTCAACAGCCGCGTCGTAAACGCGTGTTTCAACACGACAGCTACTTTCAAATTCCTAACAAACACAGACTCTTACTCCTCCTCCTTAGAAGATCTCCGCCGTATTTTGCCTCAGACCGACGCCGGCTACACTCGGAAACACTCCTACGAAACTCTCATCGCTCGTCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCGATCGGAGAATTCGGACTCTCAACCTGCGTATTTCATCCGATCTTAAACACGCTCACGAAGAAGAACAGAATCGAAGAAGCTTGGCGCGTGGTGGAATTGATGAGATCTCACGCGATTCCGGTGGACGTGACTTCATACAATTATTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGGCGAGCAGGGTGTTGAGGAAGATGGAGGAAGAGGAGGAAGGAGTTATGTCGCCAGACACGCGTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAGTCAGGGAGAGTTGAAGCGGCGATGGCGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACGCATGCGCACGTTATAGGAGAAATGGTGGAGAGTGGCTATTATGCGCTAAGTGTGGAGTTTGTGATGGCGTACGCGGGGAAAGATAAGAGATTAGATGAAGAGAATTTGGGAAGTTTGGCTAGTAAGCTTATCAAGAGGAAGAGGTTTAAAGAAGCTAAGATGGTTTTGAAGGAGATGAGTGTTAGAGGATTGAGAATGGGTGATGCTTTGCGTGAATTTCATGAGAAAAATGTGTTACAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

351

Amino Acids

39.66

Weight (kDa)

8.63

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	123 - 219	5.2e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	163 - 206	4.6e-06	PPR repeat family
PPR_1	PF12854	230 - 260	5.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40240 AT3G56030
fragaria_vesca	FvH4_7g24790
pyrus_communis	pycom01g17280
rosa_chinensis	RchiOBHm_Chr1g0370651
rosa_laevigata	RLG00000027021
rosa_multiflora	Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286370
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700
rosa_wichuraiana	Rw1G032360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc16I	TGCGCA	1 cut(s)	816
Acc36I	ACCTGC	1 cut(s)	488
AccII	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
AciI	CCGC	5 cut(s)	247, 334, 635, 752, 884
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	5 cut(s)	176, 287, 464, 913, 1025
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	5 cut(s)	166, 228, 703, 803, 881
AflIII	ACRYGT	2 cut(s)	258, 698
AgsI	TTSAA	6 cut(s)	101, 196, 268, 286, 749, 979
AjiI	CACGTC	2 cut(s)	583, 631
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	5 cut(s)	207, 278, 536, 937, 965
AluI	AGCT	5 cut(s)	207, 278, 536, 937, 965
Alw26I	GTCTC	3 cut(s)	54, 239, 407
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	415
ApoI	RAATTY	5 cut(s)	176, 287, 464, 913, 1025
AspLEI	GCGC	5 cut(s)	543, 715, 728, 817, 856
AsuHPI	GGTGA	3 cut(s)	144, 638, 1022
AsuII	TTCGAA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	109
BccI	CCATC	5 cut(s)	655, 751, 769, 868, 964
BceAI	ACGGC	2 cut(s)	209, 321
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	54, 239, 407
BfaI	CTAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	488
BglII	AGATCT	2 cut(s)	328, 560
BisI	GCNGC	2 cut(s)	247, 753
BlsI	GCNGC	2 cut(s)	248, 754
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	109
BmgBI	CACGTC	2 cut(s)	583, 631
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	1003
Bpu14I	TTCGAA	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	8 cut(s)	219, 249, 296, 302, 326, 332, 819, 849
Bse118I	RCCGGY	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	490, 780
BseMII	CTCAG	2 cut(s)	362, 758
BseRI	GAGGAG	5 cut(s)	227, 304, 307, 686, 784
BseX3I	CGGCCG	1 cut(s)	415
Bsh1236I	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
Bsh1285I	CGRYCG	2 cut(s)	418, 459
BshFI	GGCC	1 cut(s)	417
BsiEI	CGRYCG	2 cut(s)	418, 459
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	6 cut(s)	7, 201, 210, 360, 418, 575
BsiWI	CGTACG	2 cut(s)	226, 879
BslFI	GGGAC	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	54, 239, 407
BsmBI	CGTCTC	2 cut(s)	239, 407
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	109
Bsp119I	TTCGAA	1 cut(s)	219
Bsp143I	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
BspACI	CCGC	5 cut(s)	247, 334, 635, 752, 884
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	2 cut(s)	361, 759
BspFNI	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
BspHI	TCATGA	2 cut(s)	1030, 1052
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssMI	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	130, 626
Bst6I	CTCTTC	4 cut(s)	57, 663, 903, 944
BstACI	GRCGYC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	361, 643, 813
BstDEI	CTNAG	5 cut(s)	322, 348, 767, 857, 966
BstF5I	GGATG	2 cut(s)	490, 780
BstFNI	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
BstHHI	GCGC	5 cut(s)	543, 715, 728, 817, 856
BstKTI	GATC	6 cut(s)	331, 423, 444, 459, 498, 563
BstMAI	GTCTC	3 cut(s)	54, 239, 407
BstMBI	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
BstMCI	CGRYCG	2 cut(s)	418, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	414, 697, 758, 812
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
BstX2I	RGATCY	2 cut(s)	328, 560
BstYI	RGATCY	2 cut(s)	328, 560
BstZI	CGGCCG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	417
BtgZI	GCGATG	2 cut(s)	379, 770
BtrI	CACGTC	2 cut(s)	583, 631
BtsCI	GGATG	2 cut(s)	490, 780
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	3 cut(s)	361, 643, 813
CciI	TCATGA	2 cut(s)	1030, 1052
CfoI	GCGC	5 cut(s)	543, 715, 728, 817, 856
Cfr10I	RCCGGY	1 cut(s)	359
CseI	GACGC	5 cut(s)	160, 238, 365, 437, 719
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	5 cut(s)	165, 227, 702, 802, 880
CviAII	CATG	3 cut(s)	812, 1031, 1053
CviQI	GTAC	5 cut(s)	165, 227, 702, 802, 880
DdeI	CTNAG	5 cut(s)	322, 348, 767, 857, 966
DpnI	GATC	6 cut(s)	330, 422, 443, 458, 497, 562
DpnII	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
DraI	TTTAAA	1 cut(s)	958
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	57, 663, 903, 944
EarI	CTCTTC	4 cut(s)	57, 663, 903, 944
EciI	GGCGGA	2 cut(s)	323, 650
EclXI	CGGCCG	1 cut(s)	415
Eco52I	CGGCCG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	109
EcoRI	GAATTC	2 cut(s)	176, 464
EcoRII	CCWGG	1 cut(s)	154
Esp3I	CGTCTC	2 cut(s)	239, 407
FaeI	CATG	3 cut(s)	815, 1034, 1056
FaiI	YATR	8 cut(s)	452, 592, 686, 813, 824, 852, 1032, 1054
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	3 cut(s)	811, 1030, 1052
FauI	CCCGC	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	247, 753
FokI	GGATG	2 cut(s)	477, 787
Fsp4HI	GCNGC	2 cut(s)	247, 753
FspAI	RTGCGCAY	1 cut(s)	816
FspBI	CTAG	1 cut(s)	930
FspI	TGCGCA	1 cut(s)	816
GlaI	GCGC	5 cut(s)	542, 714, 727, 816, 855
GluI	GCNGC	2 cut(s)	247, 753
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	6 cut(s)	7, 201, 210, 360, 418, 575
HgaI	GACGC	5 cut(s)	160, 238, 365, 437, 719
HhaI	GCGC	5 cut(s)	543, 715, 728, 817, 856
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	815, 1034, 1056
Hin6I	GCGC	5 cut(s)	541, 713, 726, 815, 854
HinP1I	GCGC	5 cut(s)	541, 713, 726, 815, 854
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	534, 935
HinfI	GANTC	7 cut(s)	37, 63, 305, 471, 525, 571, 763
HpaII	CCGG	6 cut(s)	7, 201, 210, 360, 418, 575
HphI	GGTGA	3 cut(s)	144, 638, 1022
Hpy166II	GTNNAC	3 cut(s)	31, 256, 580
Hpy188I	TCNGA	8 cut(s)	42, 59, 351, 372, 461, 470, 495, 768
Hpy188III	TCNNGA	7 cut(s)	87, 111, 439, 511, 943, 1031, 1053
Hpy8I	GTNNAC	3 cut(s)	31, 256, 580
HpyAV	CCTTC	3 cut(s)	671, 779, 973
HpyCH4III	ACNGT	2 cut(s)	130, 626
HpyCH4IV	ACGT	5 cut(s)	115, 229, 582, 630, 819
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	414, 697, 758, 812
HpyF3I	CTNAG	5 cut(s)	322, 348, 767, 857, 966
HpySE526I	ACGT	5 cut(s)	115, 229, 582, 630, 819
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	815, 1034, 1056
HspAI	GCGC	5 cut(s)	541, 713, 726, 815, 854
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
LmnI	GCTCC	1 cut(s)	212
LweI	GCATC	1 cut(s)	1003
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	1 cut(s)	930
MaeII	ACGT	5 cut(s)	115, 229, 582, 630, 819
MaeIII	GTNAC	4 cut(s)	583, 617, 626, 1044
MalI	GATC	6 cut(s)	330, 422, 443, 458, 497, 562
MboI	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
MflI	RGATCY	2 cut(s)	328, 560
MluCI	AATT	8 cut(s)	82, 176, 287, 464, 551, 595, 913, 1025
MluI	ACGCGT	2 cut(s)	258, 698
MlyI	GAGTC	2 cut(s)	299, 465
MmeI	TCCRAC	2 cut(s)	82, 167
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	5 cut(s)	12, 69, 500, 605, 957
MspI	CCGG	6 cut(s)	7, 201, 210, 360, 418, 575
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	8 cut(s)	249, 260, 543, 569, 700, 713, 728, 884
MwoI	GCNNNNNNNGC	4 cut(s)	414, 697, 758, 812
NaeI	GCCGGC	1 cut(s)	361
NdeII	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
NgoMIV	GCCGGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	815, 1034, 1056
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	583, 626
NsbI	TGCGCA	1 cut(s)	816
NspI	RCATGY	1 cut(s)	815
NspV	TTCGAA	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	815
PagI	TCATGA	2 cut(s)	1030, 1052
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 627
PdiI	GCCGGC	1 cut(s)	361
PfeI	GAWTC	5 cut(s)	37, 63, 525, 571, 763
Pfl23II	CGTACG	2 cut(s)	226, 879
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	248, 754
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	299, 465
PpsI	GAGTC	2 cut(s)	299, 465
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspLI	CGTACG	2 cut(s)	226, 879
PsuI	RGATCY	2 cut(s)	328, 560
PsyI	GACNNNGTC	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	459
RsaI	GTAC	5 cut(s)	166, 228, 703, 803, 881
RsaNI	GTAC	5 cut(s)	165, 227, 702, 802, 880
SaqAI	TTAA	5 cut(s)	12, 69, 500, 605, 957
SatI	GCNGC	2 cut(s)	247, 753
Sau3AI	GATC	6 cut(s)	328, 420, 441, 456, 495, 560
SchI	GAGTC	2 cut(s)	299, 465
ScrFI	CCNGG	1 cut(s)	156
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	1003
SfuI	TTCGAA	1 cut(s)	219
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	8 cut(s)	82, 176, 287, 464, 551, 595, 913, 1025
SsiI	CCGC	5 cut(s)	247, 334, 635, 752, 884
SspMI	CTAG	1 cut(s)	930
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	130, 626
TaiI	ACGT	5 cut(s)	118, 232, 585, 633, 822
TaqI	TCGA	5 cut(s)	174, 180, 219, 423, 528
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	8 cut(s)	82, 176, 287, 464, 551, 595, 913, 1025
TauI	GCSGC	2 cut(s)	249, 755
TfiI	GAWTC	5 cut(s)	37, 63, 525, 571, 763
Tru1I	TTAA	5 cut(s)	12, 69, 500, 605, 957
Tru9I	TTAA	5 cut(s)	12, 69, 500, 605, 957
TseFI	GTSAC	2 cut(s)	583, 626
Tsp45I	GTSAC	2 cut(s)	583, 626
TspDTI	ATGAA	5 cut(s)	108, 479, 579, 921, 1019
TspGWI	ACGGA	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	46
XapI	RAATTY	5 cut(s)	176, 287, 464, 913, 1025
XceI	RCATGY	1 cut(s)	815
XspI	CTAG	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.