Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40240 AT3G56030 |
| fragaria_vesca | FvH4_7g24790 |
| pyrus_communis | pycom01g17280 |
| rosa_chinensis | RchiOBHm_Chr1g0370651 |
| rosa_laevigata | RLG00000027021 |
| rosa_multiflora | Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286370 |
| rosa_rugosa | Rorug01G0358100 |
| rosa_samantha | Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700 |
| rosa_wichuraiana | Rw1G032360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 91 |
| AciI | CCGC | 3 cut(s) | 91, 97, 122 |
| AcvI | CACGTG | 1 cut(s) | 51 |
| AfaI | GTAC | 1 cut(s) | 55 |
| AflIII | ACRYGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 1 cut(s) | 258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 196, 228 |
| AluBI | AGCT | 1 cut(s) | 183 |
| AluI | AGCT | 1 cut(s) | 183 |
| Ama87I | CYCGRG | 1 cut(s) | 184 |
| ApeKI | GCWGC | 1 cut(s) | 36 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 184 |
| BbrPI | CACGTG | 1 cut(s) | 51 |
| BbvCI | CCTCAGC | 1 cut(s) | 4 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BccI | CCATC | 2 cut(s) | 6, 16 |
| BisI | GCNGC | 1 cut(s) | 37 |
| BlsI | GCNGC | 1 cut(s) | 38 |
| BmeT110I | CYCGRG | 1 cut(s) | 184 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4 |
| BpuEI | CTTGAG | 1 cut(s) | 93 |
| BsaAI | YACGTR | 1 cut(s) | 51 |
| BsaWI | WCCGGW | 1 cut(s) | 30 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 17, 47 |
| BseGI | GGATG | 3 cut(s) | 17, 24, 222 |
| BseRI | GAGGAG | 1 cut(s) | 21 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| Bsh1236I | CGCG | 1 cut(s) | 91 |
| BsiHKCI | CYCGRG | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 31 |
| BsoBI | CYCGRG | 1 cut(s) | 184 |
| BspACI | CCGC | 3 cut(s) | 91, 97, 122 |
| BspFNI | CGCG | 1 cut(s) | 91 |
| BstBAI | YACGTR | 1 cut(s) | 51 |
| BstDEI | CTNAG | 2 cut(s) | 4, 167 |
| BstF5I | GGATG | 3 cut(s) | 17, 24, 222 |
| BstFNI | CGCG | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 180, 189 |
| BstUI | CGCG | 1 cut(s) | 91 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BtsCI | GGATG | 3 cut(s) | 17, 24, 222 |
| Csp6I | GTAC | 1 cut(s) | 54 |
| CviJI | RGCY | 4 cut(s) | 166, 174, 183, 192 |
| CviKI_1 | RGCY | 4 cut(s) | 166, 174, 183, 192 |
| CviQI | GTAC | 1 cut(s) | 54 |
| DdeI | CTNAG | 2 cut(s) | 4, 167 |
| Eco72I | CACGTG | 1 cut(s) | 51 |
| Eco88I | CYCGRG | 1 cut(s) | 184 |
| FaiI | YATR | 1 cut(s) | 269 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 196, 228 |
| FauI | CCCGC | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 1 cut(s) | 37 |
| FokI | GGATG | 3 cut(s) | 24, 31, 229 |
| Fsp4HI | GCNGC | 1 cut(s) | 37 |
| GluI | GCNGC | 1 cut(s) | 37 |
| HapII | CCGG | 1 cut(s) | 31 |
| HinfI | GANTC | 4 cut(s) | 64, 75, 159, 271 |
| HpaII | CCGG | 1 cut(s) | 31 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 54 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 186 |
| Hpy8I | GTNNAC | 1 cut(s) | 54 |
| HpyAV | CCTTC | 3 cut(s) | 120, 198, 252 |
| HpyCH4IV | ACGT | 2 cut(s) | 50, 56 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 180, 189 |
| HpyF3I | CTNAG | 2 cut(s) | 4, 167 |
| HpySE526I | ACGT | 2 cut(s) | 50, 56 |
| LpnPI | CCDG | 2 cut(s) | 44, 148 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| MaeII | ACGT | 2 cut(s) | 50, 56 |
| MluCI | AATT | 1 cut(s) | 253 |
| MlyI | GAGTC | 2 cut(s) | 84, 168 |
| MmeI | TCCRAC | 1 cut(s) | 119 |
| MnlI | CCTC | 5 cut(s) | 104, 164, 182, 192, 201 |
| MseI | TTAA | 1 cut(s) | 179 |
| MspI | CCGG | 1 cut(s) | 31 |
| MvnI | CGCG | 1 cut(s) | 91 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 180, 189 |
| PaeR7I | CTCGAG | 1 cut(s) | 184 |
| PfeI | GAWTC | 2 cut(s) | 64, 271 |
| PkrI | GCNGC | 1 cut(s) | 38 |
| PleI | GAGTC | 2 cut(s) | 83, 167 |
| PmaCI | CACGTG | 1 cut(s) | 51 |
| PmlI | CACGTG | 1 cut(s) | 51 |
| PpsI | GAGTC | 2 cut(s) | 83, 167 |
| Ppu21I | YACGTR | 1 cut(s) | 51 |
| PspCI | CACGTG | 1 cut(s) | 51 |
| RsaI | GTAC | 1 cut(s) | 55 |
| RsaNI | GTAC | 1 cut(s) | 54 |
| SaqAI | TTAA | 1 cut(s) | 179 |
| SatI | GCNGC | 1 cut(s) | 37 |
| SchI | GAGTC | 2 cut(s) | 84, 168 |
| SetI | ASST | 4 cut(s) | 53, 59, 185, 212 |
| Sfr274I | CTCGAG | 1 cut(s) | 184 |
| SlaI | CTCGAG | 1 cut(s) | 184 |
| SmlI | CTYRAG | 2 cut(s) | 72, 184 |
| SmoI | CTYRAG | 2 cut(s) | 72, 184 |
| Sse9I | AATT | 1 cut(s) | 253 |
| SsiI | CCGC | 3 cut(s) | 91, 97, 122 |
| TaiI | ACGT | 2 cut(s) | 53, 59 |
| TaqI | TCGA | 2 cut(s) | 43, 185 |
| TasI | AATT | 1 cut(s) | 253 |
| TfiI | GAWTC | 2 cut(s) | 64, 271 |
| Tru1I | TTAA | 1 cut(s) | 179 |
| Tru9I | TTAA | 1 cut(s) | 179 |
| TseI | GCWGC | 1 cut(s) | 36 |
| TspDTI | ATGAA | 2 cut(s) | 233, 284 |
| XhoI | CTCGAG | 1 cut(s) | 184 |