Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015459

Physical Location & Seq

Genomic Coordinates Forward (+)

19081161 .. 19082469

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTCCTCCTCCGTAAAATCTCCCACAAACCCCGAAATTCCCAACCCATCCTCACCGTCGCCGCCCGTCTCTTCACAAGTCCCGTAAATTCTATTCCCGATGAGCCCACCTCCGCCCATTACGACCTCCTGGTCAACGCCGCCGGCGAATCCAGAGACTTCGACAACCTCCACCACCTCCTCACCAAGCGCGTGAAGGACCACTGCTTCAACACCGTCAACACTTTCAAGTTCATCACCAACTCCGAGGCTTCCCTCTCCCTCCTCCCCAAGCTCTCCCAGACCCTCGCGCGTCTCCCCAAAGGCTTCACGCGCAAGTGCGCGTACGATGCTCTCATTTCCCGCCTCTGCAAGCTGGGGCGCGTCGAGGAGGCGCTGCGCGTGGTGGAGCTGATGGCGCGTGAGGATTACGGCCTCAACGCGTGTAGCTTCCACGCGATTCTGAATCTGCTTACCAAGAAGCAGAGGAACATGGCAGAGGCGCGGCGCGTGGTGGAGCTGATGAGGAAGTCCGGGGCCCCGCCGGATCTGACGTCGTATAATTATCTTCTCATGGGGTATTGCTTCTCCGGCGATTTGGCTCAGGCGGCCGGAATTTTGAGTGCTATGGAGGAGGAGGGGCTGAGGGTGGACGCGCGTACATACGACGCGCTGGTGCTCGCCGCGTGCAATGCGGGGAAGTTGGACGGGGCTATGGTGCTGCTGAGGAGGATGGCGGACGATGGAGTGCCGGTGCTGCTGTCGACCCACGTGTACGTTGTTAATTCGCTGCTGAGCCGCGGATTTTACGAGCAAGCGGTTAAGTTTGTGAGGGGTTTTAGCGGGAAGGACACGTGGTTGGATACGGAGGCTTTTGGGAGATTGGCTGTGAAGCTCATTAAGCTCGAGAGGTTTGGTGAGGCGAAGGAGGTTTTGGATGAGATGCGTAAAAGGGGTTTAGTTATTGTAGATCAATTGAAGGATTATGAATCAAAGATTACAAATAAGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

332

Amino Acids

37.15

Weight (kDa)

9.25

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	105 - 199	1.1e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	122 - 241	3e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	140 - 188	4.8e-06	PPR repeat family
TPR_24	PF23276	162 - 268	4.1e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	175 - 224	6.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40240 AT3G56030
fragaria_vesca	FvH4_7g24790
pyrus_communis	pycom01g17280
rosa_chinensis	RchiOBHm_Chr1g0370651
rosa_laevigata	RLG00000027021
rosa_multiflora	Rmu_sc0002021.1_g000005 Rmu_sc0003210.1_g000001 Rmu_sc0004550.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286370
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367800 Rh1BG331300 Rh1CG345400 Rh1DG362700
rosa_wichuraiana	Rw1G032360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	743
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	3 cut(s)	37, 88, 594
AcvI	CACGTG	2 cut(s)	751, 834
AcyI	GRCGYC	1 cut(s)	533
AfaI	GTAC	3 cut(s)	326, 640, 755
AflIII	ACRYGT	3 cut(s)	420, 750, 831
AgsI	TTSAA	3 cut(s)	211, 229, 958
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	7 cut(s)	274, 355, 391, 429, 499, 874, 883
AluI	AGCT	7 cut(s)	274, 355, 391, 429, 499, 874, 883
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	3 cut(s)	74, 150, 299
AlwI	GGATC	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	3 cut(s)	412, 516, 588
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	376, 700, 736, 769
ApoI	RAATTY	3 cut(s)	37, 88, 594
AspS9I	GGNCC	3 cut(s)	199, 516, 517
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	4 cut(s)	46, 175, 229, 908
AvaI	CYCGRG	1 cut(s)	884
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	108, 520
BbrPI	CACGTG	2 cut(s)	751, 834
Bbv12I	GWGCWC	1 cut(s)	660
BbvCI	CCTCAGC	2 cut(s)	623, 704
BbvI	GCAGC	4 cut(s)	363, 687, 723, 756
BccI	CCATC	4 cut(s)	56, 388, 706, 716
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	74, 150, 299
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	835
BlpI	GCTNAGC	1 cut(s)	773
Bme1390I	CCNGG	2 cut(s)	131, 514
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	884
BmgT120I	GGNCC	3 cut(s)	199, 516, 517
BmiI	GGNNCC	3 cut(s)	517, 518, 519
BmrFI	CCNGG	2 cut(s)	131, 514
BmsI	GCATC	2 cut(s)	319, 912
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
Bpu10I	CCTNAGC	3 cut(s)	582, 623, 704
Bpu1102I	GCTNAGC	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	514
BsaAI	YACGTR	2 cut(s)	751, 834
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	246, 513, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bse118I	RCCGGY	2 cut(s)	143, 730
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	246, 513, 778
BseGI	GGATG	3 cut(s)	48, 717, 922
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	4 cut(s)	596, 614, 695, 764
BseRI	GAGGAG	6 cut(s)	170, 254, 383, 626, 629, 721
BseSI	GKGCMC	1 cut(s)	520
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	363, 687, 723, 756
BseYI	CCCAGC	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	414, 518, 590
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	6 cut(s)	144, 513, 524, 570, 591, 731
BsiWI	CGTACG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	3 cut(s)	74, 150, 299
BsmBI	CGTCTC	2 cut(s)	74, 299
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	414, 518, 590
BsoBI	CYCGRG	1 cut(s)	884
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	3 cut(s)	108, 520, 660
Bsp143I	GATC	2 cut(s)	526, 949
Bsp1720I	GCTNAGC	1 cut(s)	773
BspANI	GGCC	3 cut(s)	414, 518, 590
BspCNI	CTCAG	4 cut(s)	595, 615, 696, 765
BspLI	GGNNCC	3 cut(s)	517, 518, 519
BspPI	GGATC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	676
BsrFI	RCCGGY	2 cut(s)	143, 730
BssAI	RCCGGY	2 cut(s)	143, 730
BssECI	CCNNGG	3 cut(s)	246, 513, 778
BssMI	GATC	2 cut(s)	526, 949
BssNI	GRCGYC	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	58, 217
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	533
BstBAI	YACGTR	2 cut(s)	751, 834
BstC8I	GCNNGC	5 cut(s)	145, 353, 660, 667, 795
BstDEI	CTNAG	4 cut(s)	582, 623, 704, 773
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	3 cut(s)	48, 717, 922
BstH2I	RGCGCY	1 cut(s)	377
BstKTI	GATC	2 cut(s)	529, 952
BstMAI	GTCTC	3 cut(s)	74, 150, 299
BstMBI	GATC	2 cut(s)	526, 949
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	8 cut(s)	312, 329, 397, 570, 587, 671, 736, 880
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	129, 512
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	363, 687, 723, 756
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	3 cut(s)	414, 518, 590
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	48, 717, 922
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	5 cut(s)	145, 353, 660, 667, 795
Cfr10I	RCCGGY	2 cut(s)	143, 730
Cfr13I	GGNCC	3 cut(s)	199, 516, 517
Cfr42I	CCGCGG	1 cut(s)	781
CseI	GACGC	4 cut(s)	281, 352, 641, 656
Csp6I	GTAC	3 cut(s)	325, 639, 754
CviAII	CATG	2 cut(s)	472, 553
CviQI	GTAC	3 cut(s)	325, 639, 754
DdeI	CTNAG	4 cut(s)	582, 623, 704, 773
DpnI	GATC	2 cut(s)	528, 951
DpnII	GATC	2 cut(s)	526, 949
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	588
EagI	CGGCCG	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	2 cut(s)	103, 731
EclXI	CGGCCG	1 cut(s)	588
Eco24I	GRGCYC	2 cut(s)	108, 520
Eco47I	GGWCC	1 cut(s)	199
Eco52I	CGGCCG	1 cut(s)	588
Eco72I	CACGTG	2 cut(s)	751, 834
Eco88I	CYCGRG	1 cut(s)	884
EcoO109I	RGGNCCY	2 cut(s)	516, 517
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	108, 520
Esp3I	CGTCTC	2 cut(s)	74, 299
FaeI	CATG	2 cut(s)	475, 556
FaiI	YATR	7 cut(s)	473, 540, 554, 608, 643, 695, 966
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	471, 552
FauI	CCCGC	4 cut(s)	350, 528, 667, 815
FblI	GTMKAC	1 cut(s)	743
FokI	GGATG	3 cut(s)	35, 724, 929
FriOI	GRGCYC	2 cut(s)	108, 520
GsaI	CCCAGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	414, 518, 590
HapII	CCGG	6 cut(s)	144, 513, 524, 570, 591, 731
HgaI	GACGC	4 cut(s)	281, 352, 641, 656
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	475, 556
HincII	GTYRAC	3 cut(s)	136, 220, 744
HindII	GTYRAC	3 cut(s)	136, 220, 744
HinfI	GANTC	4 cut(s)	149, 439, 445, 968
HpaII	CCGG	6 cut(s)	144, 513, 524, 570, 591, 731
HphI	GGTGA	4 cut(s)	46, 175, 229, 908
Hpy166II	GTNNAC	5 cut(s)	136, 220, 631, 744, 754
Hpy188I	TCNGA	3 cut(s)	247, 444, 531
Hpy188III	TCNNGA	3 cut(s)	98, 153, 886
Hpy8I	GTNNAC	5 cut(s)	136, 220, 631, 744, 754
Hpy99I	CGWCG	4 cut(s)	62, 368, 538, 650
HpyAV	CCTTC	4 cut(s)	190, 820, 898, 952
HpyCH4III	ACNGT	2 cut(s)	58, 217
HpyCH4IV	ACGT	4 cut(s)	533, 750, 756, 833
HpyCH4V	TGCA	2 cut(s)	351, 669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	312, 329, 397, 570, 587, 671, 736, 880
HpyF3I	CTNAG	4 cut(s)	582, 623, 704, 773
HpySE526I	ACGT	4 cut(s)	533, 750, 756, 833
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	475, 556
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	526, 949
LmnI	GCTCC	2 cut(s)	388, 496
Lsp1109I	GCAGC	4 cut(s)	363, 687, 723, 756
LweI	GCATC	2 cut(s)	319, 912
MaeII	ACGT	4 cut(s)	533, 750, 756, 833
MalI	GATC	2 cut(s)	528, 951
MboI	GATC	2 cut(s)	526, 949
MboII	GAAGA	2 cut(s)	64, 539
MfeI	CAATTG	1 cut(s)	953
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	108, 520, 660
MluCI	AATT	6 cut(s)	37, 88, 541, 594, 763, 953
MluI	ACGCGT	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	663, 819
MreI	CGCCGGCG	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	3 cut(s)	762, 801, 879
MspA1I	CMGCKG	1 cut(s)	780
MspI	CCGG	6 cut(s)	144, 513, 524, 570, 591, 731
MspR9I	CCNGG	2 cut(s)	131, 514
MteI	GCGCNGCGC	2 cut(s)	377, 485
MunI	CAATTG	1 cut(s)	953
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	8 cut(s)	312, 329, 397, 570, 587, 671, 736, 880
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	2 cut(s)	526, 949
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	475, 556
NlaIV	GGNNCC	3 cut(s)	517, 518, 519
PaeR7I	CTCGAG	1 cut(s)	884
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	149, 439, 445, 968
Pfl23II	CGTACG	1 cut(s)	324
PmaCI	CACGTG	2 cut(s)	751, 834
PmlI	CACGTG	2 cut(s)	751, 834
Ppu21I	YACGTR	2 cut(s)	751, 834
Psp6I	CCWGG	1 cut(s)	129
PspCI	CACGTG	2 cut(s)	751, 834
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	129
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	517, 518, 519
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	199, 516, 517
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	3 cut(s)	326, 640, 755
RsaNI	GTAC	3 cut(s)	325, 639, 754
SacII	CCGCGG	1 cut(s)	781
SalI	GTCGAC	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	762, 801, 879
Sau3AI	GATC	2 cut(s)	526, 949
Sau96I	GGNCC	3 cut(s)	199, 516, 517
ScrFI	CCNGG	2 cut(s)	131, 514
SduI	GDGCHC	3 cut(s)	108, 520, 660
SfaNI	GCATC	2 cut(s)	319, 912
Sfr274I	CTCGAG	1 cut(s)	884
Sfr303I	CCGCGG	1 cut(s)	781
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	37, 88, 541, 594, 763, 953
SspI	AATATT	1 cut(s)	992
StyD4I	CCNGG	2 cut(s)	129, 512
TaaI	ACNGT	2 cut(s)	58, 217
TaiI	ACGT	4 cut(s)	536, 753, 759, 836
TaqI	TCGA	4 cut(s)	162, 366, 743, 885
TasI	AATT	6 cut(s)	37, 88, 541, 594, 763, 953
TauI	GCSGC	6 cut(s)	65, 143, 487, 590, 665, 780
TfiI	GAWTC	4 cut(s)	149, 439, 445, 968
Tru1I	TTAA	3 cut(s)	762, 801, 879
Tru9I	TTAA	3 cut(s)	762, 801, 879
TscAI	CASTG	1 cut(s)	209
TseI	GCWGC	4 cut(s)	376, 700, 736, 769
TspDTI	ATGAA	2 cut(s)	223, 981
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	3 cut(s)	37, 88, 594
XhoI	CTCGAG	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	743
ZraI	GACGTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.