Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Forward (+)

16912805 .. 16915202

Gene Structure 2398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCAATCCTTCAAGTCTCTACTTCGTCTCTTTCTTCTTCTACTCTTCTCTCCATATCTCCCAGAAAATCTCTCTCATCTACCAAGTCATGCCGGATAGTTCGATGTTCCGTCGAGGGAACTACTGTAACCGAGAGAAAAGTCTCGGCAACCAGCGAGCCACTTCTTCTGAGAGCTGTTAAAGGTGAAGTTGTTGATAGACCTCCGGTTTGGCTTATGAGGCAAGCTGGGAGGTACATGAAGAGTTATCAAACTCTCTGTGAGAAGTATCCTTCTTTCAGAGATAGATCAGAGAATGCAGATCTTGTGGTGGAAATTTCTTTGCAGCCATGGAAGGTGTTTAAGCCAGATGGGGTGATTCTGTTCTCAGACATTCTCACTCCATTGTCTGGAATGAACATACCTTTCGACATTGTTAAAGGAAAAGGTCCTATCATCTTTAACCCGCCTCAATCAGCTGCCGACGTTGCTCAAGTTAGAGAATTCGTACCAGAGGAATCTGTTCCTTATGTTGGAGAAGCACTCAGAAGATTAAGAAATGAGGTGAACAATGAAGCCGCTGTTCTGGGATTTGTTGGAGCTCCATTTACACTTTCTTCGTATGTAATCGAAGGTGGCTCATCTAAGAACTTCACACAGATAAAAAGATTAGCTTTTTCTCAACCCAAGGTTCTACATGCCTTACTCCAGAAGTTCACAACCTCGATGATAACGTACATACGCTATCAAGCAGATAGCGGAGCTCAAGCTGTGCAAATATTCGACTCTTGGGCAACCGAGCTTAGCCCGGTGGATTTTGAGGAGTTTAGCTTACCTTATCTCAAACAGATTGTGGAAGCTGTGAAACAAACTCACCCAAACCTACCTCTCATACTTTATGCTAGTGGATCAGGAGGTTTGCTAGAGAGACTGGCTCGGACCGGTGTGGATGTTGTGAGCTTGGACTGGACTGTGGACATGGCTGAAGGAAGAGACCGGCTAGGAAGAGACATAGCAGTTCAAGGAAACGTTGATCCGGGAGTTCTATTTGGATCGAAAGAATTTATCACAAGCCGGATTCATGATACTGTGAAGAAAGCTGGGAGAGATAAACACATTCTCAACTTGGGGCATGGTATTAAAGTTGGAACCCCTGAAGAGAATGTAGCACACTTCTTTGAGGTTGCTCAAGAAATTAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

394

Amino Acids

43.58

Weight (kDa)

8.29

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	52 - 391	3.4e-123	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	3 cut(s)	446, 558, 738
AclI	AACGTT	1 cut(s)	1008
AclWI	GGATC	3 cut(s)	895, 1007, 1039
AcsI	RAATTY	3 cut(s)	315, 482, 1040
AcuI	CTGAAG	2 cut(s)	984, 1155
AfaI	GTAC	3 cut(s)	236, 489, 716
AfiI	CCNNNNNNNGG	2 cut(s)	389, 512
AgeI	ACCGGT	1 cut(s)	920
AgsI	TTSAA	2 cut(s)	14, 1001
Alw21I	GWGCWC	2 cut(s)	583, 745
Alw26I	GTCTC	6 cut(s)	22, 33, 148, 901, 966, 981
AlwI	GGATC	3 cut(s)	895, 1007, 1039
ApeKI	GCWGC	2 cut(s)	325, 458
ApoI	RAATTY	3 cut(s)	315, 482, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsiGI	ACCGGT	1 cut(s)	920
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	428, 918
AsuC2I	CCSGG	2 cut(s)	788, 1017
AsuHPI	GGTGA	4 cut(s)	197, 367, 556, 845
AvaII	GGWCC	2 cut(s)	428, 918
BanII	GRGCYC	2 cut(s)	583, 745
Bbv12I	GWGCWC	2 cut(s)	583, 745
BbvI	GCAGC	2 cut(s)	337, 445
BccI	CCATC	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	788, 1017
BcoDI	GTCTC	6 cut(s)	22, 33, 148, 901, 966, 981
BfaI	CTAG	3 cut(s)	882, 902, 980
BfuI	GTATCC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	3 cut(s)	326, 459, 558
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	3 cut(s)	327, 460, 559
Bme1390I	CCNGG	2 cut(s)	788, 1017
Bme18I	GGWCC	2 cut(s)	428, 918
BmgT120I	GGNCC	2 cut(s)	428, 918
BmiI	GGNNCC	1 cut(s)	1129
BmrFI	CCNGG	2 cut(s)	788, 1017
BplI	GAGNNNNNCTC	4 cut(s)	507, 539, 898, 930
BpmI	CTGGAG	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	3 cut(s)	456, 729, 1152
BpuMI	CCSGG	2 cut(s)	788, 1017
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	2 cut(s)	329, 666
BsaWI	WCCGGW	2 cut(s)	205, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 512
Bse118I	RCCGGY	2 cut(s)	920, 975
Bse1I	ACTGG	2 cut(s)	915, 950
BseDI	CCNNGG	2 cut(s)	329, 666
BseGI	GGATG	1 cut(s)	934
BseLI	CCNNNNNNNGG	2 cut(s)	389, 512
BseMII	CTCAG	3 cut(s)	161, 381, 538
BseNI	ACTGG	2 cut(s)	915, 950
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	2 cut(s)	337, 445
BseYI	CCCAGC	2 cut(s)	227, 1079
BshTI	ACCGGT	1 cut(s)	920
BsiHKAI	GWGCWC	2 cut(s)	583, 745
BsiSI	CCGG	7 cut(s)	94, 206, 788, 921, 976, 1016, 1054
BslI	CCNNNNNNNGG	2 cut(s)	389, 512
BsmAI	GTCTC	6 cut(s)	22, 33, 148, 901, 966, 981
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	2 cut(s)	583, 745
Bsp143I	GATC	5 cut(s)	287, 301, 887, 1012, 1031
Bsp1720I	GCTNAGC	1 cut(s)	782
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	3 cut(s)	446, 558, 738
BspCNI	CTCAG	3 cut(s)	162, 380, 537
BspHI	TCATGA	1 cut(s)	1060
BspLI	GGNNCC	1 cut(s)	1129
BspPI	GGATC	3 cut(s)	895, 1007, 1039
BspTNI	GGTCTC	1 cut(s)	966
BsrFI	RCCGGY	2 cut(s)	920, 975
BsrI	ACTGG	2 cut(s)	915, 950
BssAI	RCCGGY	2 cut(s)	920, 975
BssECI	CCNNGG	2 cut(s)	329, 666
BssMI	GATC	5 cut(s)	287, 301, 887, 1012, 1031
BssT1I	CCWWGG	2 cut(s)	329, 666
Bst4CI	ACNGT	3 cut(s)	127, 952, 1069
Bst6I	CTCTTC	5 cut(s)	51, 236, 964, 979, 1131
BstC8I	GCNNGC	2 cut(s)	158, 225
BstDEI	CTNAG	5 cut(s)	170, 367, 524, 624, 782
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	934
BstKTI	GATC	5 cut(s)	290, 304, 890, 1015, 1034
BstMAI	GTCTC	6 cut(s)	22, 33, 148, 901, 966, 981
BstMBI	GATC	5 cut(s)	287, 301, 887, 1012, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 467
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	786, 1015
BstV1I	GCAGC	2 cut(s)	337, 445
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	934
Cac8I	GCNNGC	2 cut(s)	158, 225
CciI	TCATGA	1 cut(s)	1060
Cfr10I	RCCGGY	2 cut(s)	920, 975
Cfr13I	GGNCC	2 cut(s)	428, 918
CpoI	CGGWCCG	1 cut(s)	918
Csp6I	GTAC	3 cut(s)	235, 488, 715
CspAI	ACCGGT	1 cut(s)	920
CspI	CGGWCCG	1 cut(s)	918
CviAII	CATG	7 cut(s)	90, 238, 330, 677, 958, 1061, 1112
CviQI	GTAC	3 cut(s)	235, 488, 715
DdeI	CTNAG	5 cut(s)	170, 367, 524, 624, 782
DpnI	GATC	5 cut(s)	289, 303, 889, 1014, 1033
DpnII	GATC	5 cut(s)	287, 301, 887, 1012, 1031
Eam1104I	CTCTTC	5 cut(s)	51, 236, 964, 979, 1131
EarI	CTCTTC	5 cut(s)	51, 236, 964, 979, 1131
Ecl136II	GAGCTC	2 cut(s)	581, 743
Eco130I	CCWWGG	2 cut(s)	329, 666
Eco24I	GRGCYC	2 cut(s)	583, 745
Eco31I	GGTCTC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	428, 918
Eco53kI	GAGCTC	2 cut(s)	581, 743
Eco57I	CTGAAG	2 cut(s)	984, 1155
EcoICRI	GAGCTC	2 cut(s)	581, 743
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	329, 666
EcoT38I	GRGCYC	2 cut(s)	583, 745
ErhI	CCWWGG	2 cut(s)	329, 666
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	7 cut(s)	93, 241, 333, 680, 961, 1064, 1115
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FatI	CATG	7 cut(s)	89, 237, 329, 676, 957, 1060, 1111
FauI	CCCGC	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	326, 459, 558
FokI	GGATG	1 cut(s)	941
FriOI	GRGCYC	2 cut(s)	583, 745
Fsp4HI	GCNGC	3 cut(s)	326, 459, 558
FspBI	CTAG	3 cut(s)	882, 902, 980
GluI	GCNGC	3 cut(s)	326, 459, 558
GsaI	CCCAGC	2 cut(s)	231, 1083
GsuI	CTGGAG	1 cut(s)	671
HapII	CCGG	7 cut(s)	94, 206, 788, 921, 976, 1016, 1054
Hin1II	CATG	7 cut(s)	93, 241, 333, 680, 961, 1064, 1115
HinfI	GANTC	4 cut(s)	358, 497, 764, 1057
HpaII	CCGG	7 cut(s)	94, 206, 788, 921, 976, 1016, 1054
HphI	GGTGA	4 cut(s)	197, 367, 556, 845
Hpy166II	GTNNAC	3 cut(s)	547, 696, 955
Hpy188I	TCNGA	6 cut(s)	171, 281, 292, 370, 527, 918
Hpy188III	TCNNGA	5 cut(s)	390, 688, 891, 1061, 1169
Hpy8I	GTNNAC	3 cut(s)	547, 696, 955
Hpy99I	CGWCG	2 cut(s)	116, 467
HpyAV	CCTTC	5 cut(s)	20, 282, 328, 605, 959
HpyCH4III	ACNGT	3 cut(s)	127, 952, 1069
HpyCH4IV	ACGT	3 cut(s)	465, 713, 1008
HpyCH4V	TGCA	3 cut(s)	299, 325, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 467
HpyF3I	CTNAG	5 cut(s)	170, 367, 524, 624, 782
HpySE526I	ACGT	3 cut(s)	465, 713, 1008
Hsp92II	CATG	7 cut(s)	93, 241, 333, 680, 961, 1064, 1115
Kzo9I	GATC	5 cut(s)	287, 301, 887, 1012, 1031
LmnI	GCTCC	3 cut(s)	578, 586, 740
Lsp1109I	GCAGC	2 cut(s)	337, 445
MaeI	CTAG	3 cut(s)	882, 902, 980
MaeII	ACGT	3 cut(s)	465, 713, 1008
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	289, 303, 889, 1014, 1033
MboI	GATC	5 cut(s)	287, 301, 887, 1012, 1031
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	583, 745
MluCI	AATT	4 cut(s)	315, 482, 1040, 1173
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	3 cut(s)	493, 556, 1105
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	7 cut(s)	180, 342, 417, 441, 533, 1119, 1183
MspA1I	CMGCKG	2 cut(s)	458, 560
MspI	CCGG	7 cut(s)	94, 206, 788, 921, 976, 1016, 1054
MspR9I	CCNGG	2 cut(s)	788, 1017
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	220, 467
NciI	CCSGG	2 cut(s)	788, 1017
NcoI	CCATGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	287, 301, 887, 1012, 1031
NlaIII	CATG	7 cut(s)	93, 241, 333, 680, 961, 1064, 1115
NlaIV	GGNNCC	1 cut(s)	1129
NmeAIII	GCCGAG	1 cut(s)	125
NspI	RCATGY	1 cut(s)	680
PagI	TCATGA	1 cut(s)	1060
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	358, 497, 1057
PflMI	CCANNNNNTGG	1 cut(s)	389
PfoI	TCCNGGA	1 cut(s)	1015
PinAI	ACCGGT	1 cut(s)	920
PkrI	GCNGC	3 cut(s)	327, 460, 559
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	428
Psp124BI	GAGCTC	2 cut(s)	583, 745
Psp1406I	AACGTT	1 cut(s)	1008
Psp5II	RGGWCCY	1 cut(s)	428
PspFI	CCCAGC	2 cut(s)	227, 1079
PspN4I	GGNNCC	1 cut(s)	1129
PspPI	GGNCC	2 cut(s)	428, 918
PspPPI	RGGWCCY	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	236, 489, 716
RsaNI	GTAC	3 cut(s)	235, 488, 715
Rsr2I	CGGWCCG	1 cut(s)	918
RsrII	CGGWCCG	1 cut(s)	918
SacI	GAGCTC	2 cut(s)	583, 745
SaqAI	TTAA	7 cut(s)	180, 342, 417, 441, 533, 1119, 1183
SatI	GCNGC	3 cut(s)	326, 459, 558
Sau3AI	GATC	5 cut(s)	287, 301, 887, 1012, 1031
Sau96I	GGNCC	2 cut(s)	428, 918
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	788, 1017
SduI	GDGCHC	2 cut(s)	583, 745
SinI	GGWCC	2 cut(s)	428, 918
SmlI	CTYRAG	3 cut(s)	471, 744, 1167
SmoI	CTYRAG	3 cut(s)	471, 744, 1167
Sse9I	AATT	4 cut(s)	315, 482, 1040, 1173
SsiI	CCGC	3 cut(s)	446, 558, 738
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	3 cut(s)	882, 902, 980
SstI	GAGCTC	2 cut(s)	583, 745
StyD4I	CCNGG	2 cut(s)	786, 1015
StyI	CCWWGG	2 cut(s)	329, 666
TaaI	ACNGT	3 cut(s)	127, 952, 1069
TaiI	ACGT	3 cut(s)	468, 716, 1011
TaqI	TCGA	7 cut(s)	103, 114, 408, 609, 704, 762, 1034
TasI	AATT	4 cut(s)	315, 482, 1040, 1173
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	3 cut(s)	358, 497, 1057
Tru1I	TTAA	7 cut(s)	180, 342, 417, 441, 533, 1119, 1183
Tru9I	TTAA	7 cut(s)	180, 342, 417, 441, 533, 1119, 1183
TseI	GCWGC	2 cut(s)	325, 458
TspDTI	ATGAA	4 cut(s)	254, 410, 567, 1049
TspGWI	ACGGA	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	428, 918
XapI	RAATTY	3 cut(s)	315, 482, 1040
XceI	RCATGY	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	3 cut(s)	882, 902, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.