Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Forward (+)

17014848 .. 17017308

Gene Structure 2461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTGCATTCACAGCTACGGCTCCATAGCTTCCATCTCTCTTCCCACCTCGCCTTCGTTCTCGCCAAGATCCAGATGCGCCTACAAGCCTCGCTTTCTCTGCGCCCTCGGAGGGAGTGTGGCAGAACCCCAAGTTGCCTCCGTTGCCGAGCCTCTTTTGCTCAATGCAGTTCGCGGGGACGATGTTGAGAGACCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACTCTCTGCGAGAGGTACCCTTCGTTTCGAGAAAGATCTGAAAATGTTGACCTCATTGTCGAAATTTCGCTACAGCCCTGGAAGGTCTTCAAGCCTGATGGTGTCATTTTGTTCTCGGATATTCTAACTCCTCTTTCCGGGATGAATATACCATTTGACATTGTAAAAGGTAAGGGTCCTGTAATATTCAATCCTCTGCATACTGCTGATGATATTGATCAAGTAAGAGAGTTTGTTCCACAAGAATCAGTTCCGTATGTTGGGGAAGCATTGACAATCTTGCGAAAGGAGGTAGATAATAAGGCAGCAGTGCTAGGTTTTGTCGGGGCTCCTTTCACCCTAGCATCGTATGTGGTGGAAGGTGGTTCATCAAAGCATTTCTCAAACATAAAGAGATTAGCCTTCTCTCAACCAAAGGTCCTCCATGCATTACTTCAGAAATTTACAACTTCGATGACAAAGTATATTCGATACCAAGCTGATAATGGAGCTCAAGCCGTTCAGATCTTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGTCTGCCATACTTGAAGAAAATCGTGGATGCTGTGAAAGAGACCCATCCAGATCTCCCTTTAATCCTTTACGCAAGTGGATCTGGGGGTTTGCTTGAGAGGCTAGCTTTGACCGGTGTTGATGTAGTTAGCTTGGACTGGACTGTTGATATGGCGGAAGGTAGAAGGCGACTGGGACCAAATATAGCAGTTCAAGGTCTTGATGGATCCCGGTGTTCTTTTTGGTTCGAAAGAATTCATCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

350

Amino Acids

38.74

Weight (kDa)

6.4

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	177, 956
AclWI	GGATC	4 cut(s)	66, 889, 1002, 1015
AcsI	RAATTY	4 cut(s)	309, 686, 797, 1035
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	2 cut(s)	230, 263
AfiI	CCNNNNNNNGG	4 cut(s)	114, 204, 383, 506
AgeI	ACCGGT	1 cut(s)	914
AgsI	TTSAA	4 cut(s)	337, 436, 817, 995
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	6 cut(s)	18, 32, 725, 737, 908, 933
AluI	AGCT	6 cut(s)	18, 32, 725, 737, 908, 933
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	187, 836
AlwI	GGATC	4 cut(s)	66, 889, 1002, 1015
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	4 cut(s)	309, 686, 797, 1035
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AsiGI	ACCGGT	1 cut(s)	914
Asp700I	GAANNNNTTC	3 cut(s)	332, 495, 1035
Asp718I	GGTACC	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	83, 107
AspS9I	GGNCC	4 cut(s)	422, 664, 765, 977
AsuC2I	CCSGG	2 cut(s)	385, 1012
AsuHPI	GGTGA	2 cut(s)	574, 1034
AsuII	TTCGAA	1 cut(s)	1029
AsuNHI	GCTAGC	1 cut(s)	904
AvaII	GGWCC	3 cut(s)	422, 664, 977
BamHI	GGATCC	1 cut(s)	1007
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	2 cut(s)	577, 739
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	4 cut(s)	44, 338, 855, 998
BceAI	ACGGC	2 cut(s)	37, 728
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	385, 1012
BcoDI	GTCTC	2 cut(s)	187, 836
BfaI	CTAG	3 cut(s)	560, 587, 905
BfmI	CTRYAG	1 cut(s)	317
BglII	AGATCT	3 cut(s)	281, 750, 853
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	325, 385, 1012
Bme18I	GGWCC	3 cut(s)	422, 664, 977
BmgT120I	GGNCC	4 cut(s)	422, 664, 765, 977
BmiI	GGNNCC	6 cut(s)	25, 263, 423, 576, 978, 1009
BmrFI	CCNGG	3 cut(s)	325, 385, 1012
BmrI	ACTGGG	2 cut(s)	194, 983
BmsI	GCATC	3 cut(s)	68, 599, 820
BmtI	GCTAGC	1 cut(s)	908
BmuI	ACTGGG	2 cut(s)	194, 983
BpiI	GAAGAC	1 cut(s)	325
Bpu14I	TTCGAA	1 cut(s)	1029
BpuEI	CTTGAG	2 cut(s)	723, 917
BpuMI	CCSGG	2 cut(s)	385, 1012
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	2 cut(s)	187, 836
BsaJI	CCNNGG	2 cut(s)	109, 323
BsaWI	WCCGGW	1 cut(s)	914
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 204, 383, 506
Bse118I	RCCGGY	1 cut(s)	914
Bse1I	ACTGG	4 cut(s)	200, 944, 978, 1045
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	109, 323
BseGI	GGATG	3 cut(s)	393, 835, 847
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	114, 204, 383, 506
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	4 cut(s)	200, 944, 978, 1045
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	563
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	767
BshNI	GGYRCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	3 cut(s)	384, 915, 1012
BslFI	GGGAC	2 cut(s)	194, 990
BslI	CCNNNNNNNGG	4 cut(s)	114, 204, 383, 506
BsmAI	GTCTC	2 cut(s)	187, 836
BsmFI	GGGAC	2 cut(s)	194, 990
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	767
Bso31I	GGTCTC	2 cut(s)	187, 836
Bsp119I	TTCGAA	1 cut(s)	1029
Bsp1286I	GDGCHC	2 cut(s)	577, 739
Bsp143I	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
BspACI	CCGC	2 cut(s)	177, 956
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	1 cut(s)	789
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	6 cut(s)	25, 263, 423, 576, 978, 1009
BspOI	GCTAGC	1 cut(s)	908
BspPI	GGATC	4 cut(s)	66, 889, 1002, 1015
BspT104I	TTCGAA	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	261
BspTNI	GGTCTC	2 cut(s)	187, 836
BsrFI	RCCGGY	1 cut(s)	914
BsrI	ACTGG	4 cut(s)	200, 944, 978, 1045
BssAI	RCCGGY	1 cut(s)	914
BssECI	CCNNGG	2 cut(s)	109, 323
BssMI	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	946
Bst6I	CTCTTC	2 cut(s)	48, 230
BstBI	TTCGAA	1 cut(s)	1029
BstC8I	GCNNGC	3 cut(s)	7, 219, 906
BstDEI	CTNAG	1 cut(s)	776
BstF5I	GGATG	3 cut(s)	393, 835, 847
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	83, 107
BstKTI	GATC	7 cut(s)	74, 284, 466, 753, 856, 884, 1010
BstMAI	GTCTC	2 cut(s)	187, 836
BstMBI	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 102, 146, 160, 214, 901
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	323, 383, 1010
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	563
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	6 cut(s)	71, 281, 750, 853, 881, 1007
BstYI	RGATCY	6 cut(s)	71, 281, 750, 853, 881, 1007
BsuRI	GGCC	1 cut(s)	767
BtsCI	GGATG	3 cut(s)	393, 835, 847
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	3 cut(s)	7, 219, 906
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	83, 107
Cfr10I	RCCGGY	1 cut(s)	914
Cfr13I	GGNCC	4 cut(s)	422, 664, 765, 977
Csp6I	GTAC	2 cut(s)	229, 262
CspAI	ACCGGT	1 cut(s)	914
CviAII	CATG	4 cut(s)	211, 232, 671, 762
CviQI	GTAC	2 cut(s)	229, 262
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	7 cut(s)	73, 283, 465, 752, 855, 883, 1009
DpnII	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	48, 230
EarI	CTCTTC	2 cut(s)	48, 230
EciI	GGCGGA	1 cut(s)	971
Ecl136II	GAGCTC	1 cut(s)	737
Eco24I	GRGCYC	2 cut(s)	577, 739
Eco31I	GGTCTC	2 cut(s)	187, 836
Eco47I	GGWCC	3 cut(s)	422, 664, 977
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	737
EcoO109I	RGGNCCY	2 cut(s)	422, 664
EcoRI	GAATTC	2 cut(s)	797, 1035
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	577, 739
FaeI	CATG	4 cut(s)	214, 235, 674, 765
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	194, 990
FatI	CATG	4 cut(s)	210, 231, 670, 761
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	400, 834, 842
FriOI	GRGCYC	2 cut(s)	577, 739
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	3 cut(s)	560, 587, 905
GlaI	GCGC	2 cut(s)	82, 106
GluI	GCNGC	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	3 cut(s)	384, 915, 1012
HhaI	GCGC	2 cut(s)	83, 107
Hin1II	CATG	4 cut(s)	214, 235, 674, 765
Hin6I	GCGC	2 cut(s)	81, 105
HinP1I	GCGC	2 cut(s)	81, 105
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	491, 758
HpaII	CCGG	3 cut(s)	384, 915, 1012
HphI	GGTGA	2 cut(s)	574, 1034
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	113, 286, 364, 684, 750
Hpy188III	TCNNGA	5 cut(s)	75, 211, 275, 851, 1001
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	7 cut(s)	66, 276, 322, 599, 658, 953, 960
HpyCH4III	ACNGT	1 cut(s)	946
HpyCH4V	TGCA	4 cut(s)	9, 170, 445, 674
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 102, 146, 160, 214, 901
HpyF3I	CTNAG	1 cut(s)	776
Hsp92II	CATG	4 cut(s)	214, 235, 674, 765
HspAI	GCGC	2 cut(s)	81, 105
KpnI	GGTACC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
LmnI	GCTCC	3 cut(s)	29, 580, 734
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	3 cut(s)	68, 599, 820
MaeI	CTAG	3 cut(s)	560, 587, 905
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	7 cut(s)	73, 283, 465, 752, 855, 883, 1009
MboI	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
MboII	GAAGA	4 cut(s)	35, 247, 325, 829
MflI	RGATCY	6 cut(s)	71, 281, 750, 853, 881, 1007
MhlI	GDGCHC	2 cut(s)	577, 739
MluCI	AATT	4 cut(s)	309, 686, 797, 1035
MlyI	GAGTC	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	3 cut(s)	332, 495, 1035
MseI	TTAA	1 cut(s)	863
MspI	CCGG	3 cut(s)	384, 915, 1012
MspR9I	CCNGG	3 cut(s)	325, 385, 1012
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	6 cut(s)	15, 102, 146, 160, 214, 901
NciI	CCSGG	2 cut(s)	385, 1012
NdeII	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
NheI	GCTAGC	1 cut(s)	904
NlaIII	CATG	4 cut(s)	214, 235, 674, 765
NlaIV	GGNNCC	6 cut(s)	25, 263, 423, 576, 978, 1009
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	9
PdmI	GAANNNNTTC	3 cut(s)	332, 495, 1035
PfeI	GAWTC	1 cut(s)	491
PfoI	TCCNGGA	1 cut(s)	383
PinAI	ACCGGT	1 cut(s)	914
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PpuMI	RGGWCCY	2 cut(s)	422, 664
Psp124BI	GAGCTC	1 cut(s)	739
Psp5II	RGGWCCY	2 cut(s)	422, 664
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	6 cut(s)	25, 263, 423, 576, 978, 1009
PspPI	GGNCC	4 cut(s)	422, 664, 765, 977
PspPPI	RGGWCCY	2 cut(s)	422, 664
PsuI	RGATCY	6 cut(s)	71, 281, 750, 853, 881, 1007
RsaI	GTAC	2 cut(s)	230, 263
RsaNI	GTAC	2 cut(s)	229, 262
SacI	GAGCTC	1 cut(s)	739
SaqAI	TTAA	1 cut(s)	863
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	7 cut(s)	71, 281, 463, 750, 853, 881, 1007
Sau96I	GGNCC	4 cut(s)	422, 664, 765, 977
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	3 cut(s)	325, 385, 1012
SduI	GDGCHC	2 cut(s)	577, 739
SfaNI	GCATC	3 cut(s)	68, 599, 820
SfcI	CTRYAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	1029
SinI	GGWCC	3 cut(s)	422, 664, 977
SmlI	CTYRAG	2 cut(s)	738, 896
SmoI	CTYRAG	2 cut(s)	738, 896
Sse9I	AATT	4 cut(s)	309, 686, 797, 1035
SsiI	CCGC	2 cut(s)	177, 956
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	3 cut(s)	560, 587, 905
SstI	GAGCTC	1 cut(s)	739
StyD4I	CCNGG	3 cut(s)	323, 383, 1010
TaaI	ACNGT	1 cut(s)	946
TaqI	TCGA	5 cut(s)	274, 306, 698, 715, 1029
TasI	AATT	4 cut(s)	309, 686, 797, 1035
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	863
Tru9I	TTAA	1 cut(s)	863
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	1 cut(s)	551
TspDTI	ATGAA	4 cut(s)	248, 404, 603, 1028
TspGWI	ACGGA	2 cut(s)	133, 489
TspRI	CASTG	1 cut(s)	561
VpaK11BI	GGWCC	3 cut(s)	422, 664, 977
XapI	RAATTY	4 cut(s)	309, 686, 797, 1035
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XmnI	GAANNNNTTC	3 cut(s)	332, 495, 1035
XspI	CTAG	3 cut(s)	560, 587, 905
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.