RLG00000026943

Uroporphyrinogen decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
7135181 .. 7137886
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026943

Sequence Viewer

Length: 1248 bp
ATGCAAAGACCTTGTTCTTCTTCACAGAGTGATAGAGACCCAAAGCTTCTTCCTTTGCCTCCAAATATGTCCTGCATTCACAGCTATGGCTCCATAGCTTGCTTCTCTGCTTCCTCCTCCGCTTCATTAACAAGAAGGAGATCCACTCTCTCTCCCAAGCCTCGAATCCTCTGCGCCGTGGGAGGGAGTGTGGCTGAGCCCCAAGTGACCTCTGTGGCTGAGCCGCTTTTGCTCAATGCGGTTCGGGGTGAAGATGTGGAAAGACCTCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAAATCTCTGTGAGAGGCATCCTTCTTTTCGAGAAAGATCTGAAAATGTAGACCTTGTAGTCGAGATTTCGCTTCAGCCCTGGAAGGTTTTCAAGCCTGATGGAGTCATTTTGTTCTCGGACATTCTTACTCCGCTTTCTGGGATGAACATACCATTTGACATTGTTAAAGGCAAGGGTCCGGTGATATTTAATCCTTTAAGTAGTGCTGCGGATGTTGATGAAGTGAGAGAATTTGTTCCTCCAGAGTCAGTTCCGTATGTTGGGGAAGCACTGACAATCTTGCGAAAAGAGGTAGATAATAAGGCAGCAGTGTTGGGTTTTGTTGGTGCTCCTTTCACGTTAGCATCATATGTGGTCGAAGGTGGTTCATCAAAGCACTTCTCAAAAATAAAGAGATTAGCTTTCTCTCAACCCAAGGTCCTCCATGCGTTACTTCAGAAATTTGCAACTTCAATGACAACGTATATTCAATACCAAGCTGATAGTGGAGCTCAAGCTGTTCAGATATTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGTCTTCCATACTTGAAACAAATTGTGGATGCAGTGAAACTGACTCATCCAGATCTCCCTTTGATTCTTTATGCAAGTGGGTCTGGCGGTTTGCTTGAGAGGCTGGCTTTGACTGGCGTGGATGTAGTTAGCTTGGACTGGAGTGTTGACATGGCTGAAGGTAGAAAGCGACTGGGACCAAATGTAGCCGTTCAAGGTAATGTGGATCCCGGTGTTCTCTTCGGTTCAAAAGACTTCATCACCAGGAGAATACATGAAACTGTGAGGAAAGCTGGTAGAGGGAAACATATTTTGAATCTTGGCCATGGAATTGTAGTAGGTACACCTGAGGAGAACGTTGCTCATTTCTTTGAAGTCGCAAAAGACATCAGATATTGA

Protein Analysis

416

Amino Acids

45.5

Weight (kDa)

7.67

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URO-D PF01208 76 - 412 8.8e-123 Uroporphyrinogen decarboxylase (URO-D)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012047)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 363
AciI CCGC 6 cut(s) 120, 224, 239, 446, 524, 957
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 3 cut(s) 135, 1070, 1083
AcoI YGGCCR 1 cut(s) 1171
AcsI RAATTY 3 cut(s) 545, 755, 866
AcuI CTGAAG 3 cut(s) 371, 734, 1047
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 2 cut(s) 299, 1192
AfiI CCNNNNNNNGG 3 cut(s) 183, 452, 575
AgsI TTSAA 8 cut(s) 406, 768, 785, 886, 1064, 1098, 1165, 1223
AjnI CCWGG 2 cut(s) 392, 1112
AluBI AGCT 9 cut(s) 46, 84, 98, 716, 794, 806, 812, 1002, 1142
AluI AGCT 9 cut(s) 46, 84, 98, 716, 794, 806, 812, 1002, 1142
Alw21I GWGCWC 2 cut(s) 646, 808
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 3 cut(s) 135, 1070, 1083
AoxI GGCC 2 cut(s) 834, 1171
ApeKI GCWGC 2 cut(s) 521, 620
ApoI RAATTY 3 cut(s) 545, 755, 866
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 2 cut(s) 401, 549
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 4 cut(s) 491, 733, 834, 1046
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 3 cut(s) 260, 508, 1102
AvaII GGWCC 3 cut(s) 491, 733, 1046
AxyI CCTNAGG 1 cut(s) 1197
BalI TGGCCA 1 cut(s) 1173
BamHI GGATCC 1 cut(s) 1075
BanII GRGCYC 2 cut(s) 201, 808
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 2 cut(s) 646, 808
BbvI GCAGC 2 cut(s) 508, 632
BccI CCATC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 161, 1043
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 2 cut(s) 394, 1114
BcnI CCSGG 1 cut(s) 1080
BcoDI GTCTC 1 cut(s) 30
BglII AGATCT 2 cut(s) 350, 922
BisI GCNGC 3 cut(s) 224, 522, 621
BlpI GCTNAGC 2 cut(s) 195, 219
BlsI GCNGC 3 cut(s) 225, 523, 622
Bme1390I CCNGG 3 cut(s) 394, 1080, 1114
Bme18I GGWCC 3 cut(s) 491, 733, 1046
BmgT120I GGNCC 4 cut(s) 491, 733, 834, 1046
BmiI GGNNCC 4 cut(s) 91, 492, 1047, 1077
BmrFI CCNGG 3 cut(s) 394, 1080, 1114
BmrI ACTGGG 1 cut(s) 1052
BmsI GCATC 3 cut(s) 340, 668, 889
BmuI ACTGGG 1 cut(s) 1052
BpiI GAAGAC 1 cut(s) 866
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 2 cut(s) 540, 1030
Bpu1102I GCTNAGC 2 cut(s) 195, 219
BpuEI CTTGAG 2 cut(s) 792, 986
BpuMI CCSGG 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 177, 392, 729, 1174
BsaWI WCCGGW 2 cut(s) 268, 493
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 174, 204
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 452, 575
Bse1I ACTGG 3 cut(s) 988, 1013, 1047
Bse21I CCTNAGG 1 cut(s) 1197
BseBI CCWGG 2 cut(s) 394, 1114
BseDI CCNNGG 4 cut(s) 177, 392, 729, 1174
BseGI GGATG 6 cut(s) 331, 462, 532, 904, 916, 997
BseLI CCNNNNNNNGG 3 cut(s) 183, 452, 575
BseMII CTCAG 4 cut(s) 186, 210, 859, 1188
BseNI ACTGG 3 cut(s) 988, 1013, 1047
BseRI GAGGAG 2 cut(s) 106, 1214
BseXI GCAGC 2 cut(s) 508, 632
BshFI GGCC 2 cut(s) 836, 1173
BsiHKAI GWGCWC 2 cut(s) 646, 808
BsiSI CCGG 3 cut(s) 269, 494, 1080
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 3 cut(s) 183, 452, 575
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 1059
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 836, 1173
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 3 cut(s) 201, 646, 808
Bsp143I GATC 4 cut(s) 140, 350, 922, 1075
Bsp1720I GCTNAGC 2 cut(s) 195, 219
Bsp19I CCATGG 1 cut(s) 1174
BspACI CCGC 6 cut(s) 120, 224, 239, 446, 524, 957
BspANI GGCC 2 cut(s) 836, 1173
BspCNI CTCAG 4 cut(s) 187, 211, 858, 1189
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 91, 492, 1047, 1077
BspPI GGATC 3 cut(s) 135, 1070, 1083
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 3 cut(s) 988, 1013, 1047
BssECI CCNNGG 4 cut(s) 177, 392, 729, 1174
BssMI GATC 4 cut(s) 140, 350, 922, 1075
BssT1I CCWWGG 2 cut(s) 729, 1174
Bst2UI CCWGG 2 cut(s) 394, 1114
Bst4CI ACNGT 1 cut(s) 1132
Bst6I CTCTTC 2 cut(s) 299, 1094
BstC8I GCNNGC 3 cut(s) 100, 288, 975
BstDEI CTNAG 4 cut(s) 195, 219, 845, 1197
BstDSI CCRYGG 2 cut(s) 177, 1174
BstF5I GGATG 6 cut(s) 331, 462, 532, 904, 916, 997
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 4 cut(s) 143, 353, 925, 1078
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 4 cut(s) 140, 350, 922, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 81, 229, 283, 970
BstNI CCWGG 2 cut(s) 394, 1114
BstSCI CCNGG 3 cut(s) 392, 1078, 1112
BstV1I GCAGC 2 cut(s) 508, 632
BstV2I GAAGAC 1 cut(s) 866
BstX2I RGATCY 4 cut(s) 140, 350, 922, 1075
BstYI RGATCY 4 cut(s) 140, 350, 922, 1075
Bsu36I CCTNAGG 1 cut(s) 1197
BsuRI GGCC 2 cut(s) 836, 1173
BtgI CCRYGG 2 cut(s) 177, 1174
BtsCI GGATG 6 cut(s) 331, 462, 532, 904, 916, 997
BtsI GCAGTG 2 cut(s) 630, 909
BtsIMutI CAGTG 3 cut(s) 584, 630, 909
Cac8I GCNNGC 3 cut(s) 100, 288, 975
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 4 cut(s) 491, 733, 834, 1046
Csp6I GTAC 2 cut(s) 298, 1191
CviAII CATG 7 cut(s) 280, 301, 740, 831, 1021, 1124, 1175
CviQI GTAC 2 cut(s) 298, 1191
DdeI CTNAG 4 cut(s) 195, 219, 845, 1197
DpnI GATC 4 cut(s) 142, 352, 924, 1077
DpnII GATC 4 cut(s) 140, 350, 922, 1075
DraIII CACNNNGTG 1 cut(s) 29
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 1171
Eam1104I CTCTTC 2 cut(s) 299, 1094
EarI CTCTTC 2 cut(s) 299, 1094
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 2 cut(s) 729, 1174
Eco24I GRGCYC 2 cut(s) 201, 808
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 491, 733, 1046
Eco53kI GAGCTC 1 cut(s) 806
Eco57I CTGAAG 3 cut(s) 371, 734, 1047
Eco81I CCTNAGG 1 cut(s) 1197
EcoICRI GAGCTC 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 2 cut(s) 392, 1112
EcoT14I CCWWGG 2 cut(s) 729, 1174
EcoT38I GRGCYC 2 cut(s) 201, 808
ErhI CCWWGG 2 cut(s) 729, 1174
FaeI CATG 7 cut(s) 283, 304, 743, 834, 1024, 1127, 1178
FaqI GGGAC 1 cut(s) 1059
FatI CATG 7 cut(s) 279, 300, 739, 830, 1020, 1123, 1174
FauNDI CATATG 1 cut(s) 664
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 224, 522, 621
FokI GGATG 6 cut(s) 318, 469, 539, 903, 911, 1004
FriOI GRGCYC 2 cut(s) 201, 808
Fsp4HI GCNGC 3 cut(s) 224, 522, 621
GlaI GCGC 1 cut(s) 175
GluI GCNGC 3 cut(s) 224, 522, 621
GsuI CTGGAG 2 cut(s) 540, 1030
HaeIII GGCC 2 cut(s) 836, 1173
HapII CCGG 3 cut(s) 269, 494, 1080
HhaI GCGC 1 cut(s) 176
Hin1II CATG 7 cut(s) 283, 304, 743, 834, 1024, 1127, 1178
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 7 cut(s) 165, 417, 560, 827, 913, 934, 1165
HpaII CCGG 3 cut(s) 269, 494, 1080
HphI GGTGA 3 cut(s) 260, 508, 1102
Hpy166II GTNNAC 3 cut(s) 364, 1018, 1193
Hpy188I TCNGA 5 cut(s) 355, 433, 753, 819, 1241
Hpy188III TCNNGA 5 cut(s) 280, 344, 376, 557, 920
Hpy8I GTNNAC 3 cut(s) 364, 1018, 1193
HpyAV CCTTC 5 cut(s) 129, 345, 391, 668, 1022
HpyCH4III ACNGT 1 cut(s) 1132
HpyCH4IV ACGT 3 cut(s) 653, 776, 1206
HpyCH4V TGCA 5 cut(s) 4, 75, 761, 902, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 229, 283, 970
HpyF3I CTNAG 4 cut(s) 195, 219, 845, 1197
HpySE526I ACGT 3 cut(s) 653, 776, 1206
Hsp92II CATG 7 cut(s) 283, 304, 743, 834, 1024, 1127, 1178
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 4 cut(s) 140, 350, 922, 1075
LmnI GCTCC 3 cut(s) 95, 649, 803
Lsp1109I GCAGC 2 cut(s) 508, 632
LweI GCATC 3 cut(s) 340, 668, 889
MaeII ACGT 3 cut(s) 653, 776, 1206
MaeIII GTNAC 3 cut(s) 205, 308, 744
MalI GATC 4 cut(s) 142, 352, 924, 1077
MboI GATC 4 cut(s) 140, 350, 922, 1075
MboII GAAGA 7 cut(s) 9, 12, 41, 263, 316, 866, 1081
MflI RGATCY 4 cut(s) 140, 350, 922, 1075
MhlI GDGCHC 3 cut(s) 201, 646, 808
MlsI TGGCCA 1 cut(s) 1173
MluCI AATT 5 cut(s) 545, 755, 866, 891, 1179
MluNI TGGCCA 1 cut(s) 1173
MlyI GAGTC 4 cut(s) 426, 569, 821, 907
Mox20I TGGCCA 1 cut(s) 1173
MroXI GAANNNNTTC 2 cut(s) 401, 549
MscI TGGCCA 1 cut(s) 1173
MseI TTAA 4 cut(s) 128, 480, 504, 512
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 1173
MspI CCGG 3 cut(s) 269, 494, 1080
MspR9I CCNGG 3 cut(s) 394, 1080, 1114
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 394, 1114
MwoI GCNNNNNNNGC 4 cut(s) 81, 229, 283, 970
NciI CCSGG 1 cut(s) 1080
NcoI CCATGG 1 cut(s) 1174
NdeI CATATG 1 cut(s) 664
NdeII GATC 4 cut(s) 140, 350, 922, 1075
NlaIII CATG 7 cut(s) 283, 304, 743, 834, 1024, 1127, 1178
NlaIV GGNNCC 4 cut(s) 91, 492, 1047, 1077
NmuCI GTSAC 1 cut(s) 205
PagI TCATGA 1 cut(s) 279
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 2 cut(s) 401, 549
PfeI GAWTC 3 cut(s) 165, 934, 1165
PkrI GCNGC 3 cut(s) 225, 523, 622
PleI GAGTC 4 cut(s) 425, 568, 821, 907
PpsI GAGTC 4 cut(s) 425, 568, 821, 907
PpuMI RGGWCCY 1 cut(s) 733
Psp124BI GAGCTC 1 cut(s) 808
Psp1406I AACGTT 1 cut(s) 1206
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 2 cut(s) 392, 1112
PspGI CCWGG 2 cut(s) 392, 1112
PspN4I GGNNCC 4 cut(s) 91, 492, 1047, 1077
PspPI GGNCC 4 cut(s) 491, 733, 834, 1046
PspPPI RGGWCCY 1 cut(s) 733
PsuI RGATCY 4 cut(s) 140, 350, 922, 1075
RsaI GTAC 2 cut(s) 299, 1192
RsaNI GTAC 2 cut(s) 298, 1191
RseI CAYNNNNRTG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 4 cut(s) 128, 480, 504, 512
SatI GCNGC 3 cut(s) 224, 522, 621
Sau3AI GATC 4 cut(s) 140, 350, 922, 1075
Sau96I GGNCC 4 cut(s) 491, 733, 834, 1046
SchI GAGTC 4 cut(s) 426, 569, 821, 907
ScrFI CCNGG 3 cut(s) 394, 1080, 1114
SduI GDGCHC 3 cut(s) 201, 646, 808
SfaNI GCATC 3 cut(s) 340, 668, 889
SinI GGWCC 3 cut(s) 491, 733, 1046
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 807, 965
SmoI CTYRAG 2 cut(s) 807, 965
Sse9I AATT 5 cut(s) 545, 755, 866, 891, 1179
SsiI CCGC 6 cut(s) 120, 224, 239, 446, 524, 957
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 3 cut(s) 392, 1078, 1112
StyI CCWWGG 2 cut(s) 729, 1174
TaaI ACNGT 1 cut(s) 1132
TaiI ACGT 3 cut(s) 656, 779, 1209
TaqI TCGA 4 cut(s) 163, 343, 375, 672
TasI AATT 5 cut(s) 545, 755, 866, 891, 1179
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 3 cut(s) 165, 934, 1165
Tru1I TTAA 4 cut(s) 128, 480, 504, 512
Tru9I TTAA 4 cut(s) 128, 480, 504, 512
TscAI CASTG 3 cut(s) 591, 630, 909
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 521, 620
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 7 cut(s) 114, 317, 473, 549, 672, 1096, 1140
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 3 cut(s) 591, 630, 909
VpaK11BI GGWCC 3 cut(s) 491, 733, 1046
XapI RAATTY 3 cut(s) 545, 755, 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 2 cut(s) 401, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.