Prupe.2G261500_v2.0.a1

Uroporphyrinogen decarboxylase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
27058197 .. 27061686
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G261500.1

Sequence Viewer

Length: 1179 bp
ATGTCCTGCATTCACAGCTACGGCTCCATAGCTTCCTTCTCTGTTCCCTCCTCACCTTCCTTTACACGAAGATCCAGATGCGCCTCCAAGCCTAAGCTCCTCTGTGCACTCGGAGGGAGTGTGGCAGAACCCAAAGTTACCTCTGTTGCTGAGCCGCTTTTGCTCAATGCGGTTCGTGGGGACGATGTTGAAAGGCCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTATCAAACTCTCTGCGAGAGGTATCCGTCGTTTCGGGAAAGGTCTGAAAATGTTGACCTTATTGTCGAAATTTCTCTACAGCCCTGGAAGGTTTTCAAGCCTGACGGAGTCATTTTATTCTCTGACATTCTTACTCCTCTCTCCGGGATGAATATACCATTTGACATTGTAAAAGGCAGGGGTCCTGTAATATTTGATCCTCTACATACAGCTGAGGATGTTGATCAAGTAAGAGAATTTGTTCCTCAAGAGTCAGTTCCATATGTTGGGGAAGCATTGACAATCTTGCGAAAAGAGGTAGATAATCAGGCAGCAGTGCTAGGTTTTGTTGGGGCTCCTTTTACCCTTGCATCGTATGTGGTGGAAGGTGGTTCATCAAAACACTTCACAAAGATTAAGAGATTAGCCTTCTCTCAACCGAAGGTCCTCCATGCATTACTTCAGAAATTTACAACTTCGATGACAAAGTATATTCGATACCAAGCTGATAGTGGAGCTCAAGCTGTTCAGATATTTGACTCATGGGCCACAGAGCTCAGCCCTGTTGATTTTGAGGAATTCAGTCTCCCATACTTGAAGCAAATTGTGGATGGTGTGAAAGAGACCCATCCAGATCTCCCTTTAATCCTTTATGCAAGTGGATCTGGGGGTCTGCTTGAGAGGCTGGCTTTGACGGGTGTTGATGTAGTTAGCTTGGACTGGACTGTTGATATGGCTGAAGGTAGACGACGACTGGGACCAAATATAGCAGTTCAAGGTAATGTGGATCCTGGTGTTCTTTTTGGTTCAAAGGAGTTCATCACCAGCCGAATAAATGATACGGTGACGAAAGCTGGTAGAGGGAGACATATTTTGAATCTTGGCCATGGCATTGTAGTAGGTACACCTGAGGAGAATGTTGCTCATTTCTTTGAGGTTGCTAAAGGAATCAGATACTAA

Protein Analysis

393

Amino Acids

43.16

Weight (kDa)

6.73

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012047)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 1 cut(s) 964
AciI CCGC 2 cut(s) 155, 170
AclWI GGATC 5 cut(s) 66, 431, 889, 1001, 1014
AcoI YGGCCR 1 cut(s) 1102
AcsI RAATTY 4 cut(s) 309, 476, 686, 797
AcuI CTGAAG 2 cut(s) 665, 978
AfaI GTAC 2 cut(s) 230, 1123
AfiI CCNNNNNNNGG 3 cut(s) 204, 383, 506
AgsI TTSAA 6 cut(s) 191, 337, 817, 995, 1029, 1096
AjnI CCWGG 2 cut(s) 323, 1009
Alw21I GWGCWC 3 cut(s) 109, 739, 777
Alw26I GTCTC 3 cut(s) 809, 836, 1078
Alw44I GTGCAC 1 cut(s) 105
AlwI GGATC 5 cut(s) 66, 431, 889, 1001, 1014
AoxI GGCC 3 cut(s) 194, 765, 1102
ApaLI GTGCAC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 4 cut(s) 309, 476, 686, 797
Asp700I GAANNNNTTC 2 cut(s) 332, 480
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 5 cut(s) 195, 422, 664, 765, 977
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 45, 1033, 1075
AvaII GGWCC 3 cut(s) 422, 664, 977
AxyI CCTNAGG 1 cut(s) 1128
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 1104
BamHI GGATCC 1 cut(s) 1006
BanII GRGCYC 3 cut(s) 577, 739, 777
Bbv12I GWGCWC 3 cut(s) 109, 739, 777
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 563
BccI CCATC 2 cut(s) 824, 855
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 325, 1011
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 809, 836, 1078
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 317
BfuI GTATCC 1 cut(s) 273
BglII AGATCT 1 cut(s) 853
BisI GCNGC 2 cut(s) 155, 552
BlpI GCTNAGC 2 cut(s) 150, 776
BlsI GCNGC 2 cut(s) 156, 553
Bme1390I CCNGG 3 cut(s) 325, 385, 1011
Bme18I GGWCC 3 cut(s) 422, 664, 977
BmgT120I GGNCC 5 cut(s) 195, 422, 664, 765, 977
BmiI GGNNCC 6 cut(s) 25, 197, 423, 576, 978, 1008
BmrFI CCNGG 3 cut(s) 325, 385, 1011
BmrI ACTGGG 2 cut(s) 194, 983
BmsI GCATC 2 cut(s) 68, 599
BmuI ACTGGG 2 cut(s) 194, 983
Bpu10I CCTNAGC 2 cut(s) 93, 453
Bpu1102I GCTNAGC 2 cut(s) 150, 776
BpuEI CTTGAG 3 cut(s) 471, 723, 917
BpuMI CCSGG 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 323, 1105
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 383, 506
Bse1I ACTGG 3 cut(s) 200, 944, 978
Bse21I CCTNAGG 1 cut(s) 1128
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 2 cut(s) 325, 1011
BseDI CCNNGG 2 cut(s) 323, 1105
BseGI GGATG 4 cut(s) 393, 463, 835, 847
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 204, 383, 506
BseMII CTCAG 4 cut(s) 141, 444, 790, 1119
BseNI ACTGG 3 cut(s) 200, 944, 978
BseRI GAGGAG 4 cut(s) 40, 89, 366, 1145
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 563
BshFI GGCC 3 cut(s) 196, 767, 1104
BsiHKAI GWGCWC 3 cut(s) 109, 739, 777
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 2 cut(s) 194, 990
BslI CCNNNNNNNGG 3 cut(s) 204, 383, 506
BsmAI GTCTC 3 cut(s) 809, 836, 1078
BsmFI GGGAC 2 cut(s) 194, 990
BsmI GAATGC 1 cut(s) 9
BsnI GGCC 3 cut(s) 196, 767, 1104
Bso31I GGTCTC 1 cut(s) 836
Bsp1286I GDGCHC 4 cut(s) 109, 577, 739, 777
Bsp143I GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
Bsp1720I GCTNAGC 2 cut(s) 150, 776
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 2 cut(s) 155, 170
BspANI GGCC 3 cut(s) 196, 767, 1104
BspCNI CTCAG 4 cut(s) 142, 445, 789, 1120
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 6 cut(s) 25, 197, 423, 576, 978, 1008
BspPI GGATC 5 cut(s) 66, 431, 889, 1001, 1014
BspTNI GGTCTC 1 cut(s) 836
BsrI ACTGG 3 cut(s) 200, 944, 978
BssECI CCNNGG 2 cut(s) 323, 1105
BssMI GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
BssT1I CCWWGG 1 cut(s) 1105
Bst2UI CCWGG 2 cut(s) 325, 1011
Bst4CI ACNGT 2 cut(s) 946, 1063
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 219, 906
BstDEI CTNAG 5 cut(s) 93, 150, 453, 776, 1128
BstDSI CCRYGG 1 cut(s) 1105
BstF5I GGATG 4 cut(s) 393, 463, 835, 847
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 6 cut(s) 74, 439, 466, 856, 884, 1009
BstMAI GTCTC 3 cut(s) 809, 836, 1078
BstMBI GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 15, 160, 214, 901
BstNI CCWGG 2 cut(s) 325, 1011
BstSCI CCNGG 3 cut(s) 323, 383, 1009
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 563
BstX2I RGATCY 4 cut(s) 71, 853, 881, 1006
BstYI RGATCY 4 cut(s) 71, 853, 881, 1006
Bsu36I CCTNAGG 1 cut(s) 1128
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 196, 767, 1104
BtgI CCRYGG 1 cut(s) 1105
BtsCI GGATG 4 cut(s) 393, 463, 835, 847
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 219, 906
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 195, 422, 664, 765, 977
Csp6I GTAC 2 cut(s) 229, 1122
CviAII CATG 5 cut(s) 211, 232, 671, 762, 1106
CviQI GTAC 2 cut(s) 229, 1122
DdeI CTNAG 5 cut(s) 93, 150, 453, 776, 1128
DpnI GATC 6 cut(s) 73, 438, 465, 855, 883, 1008
DpnII GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 1102
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 2 cut(s) 737, 775
Eco130I CCWWGG 1 cut(s) 1105
Eco24I GRGCYC 3 cut(s) 577, 739, 777
Eco31I GGTCTC 1 cut(s) 836
Eco47I GGWCC 3 cut(s) 422, 664, 977
Eco53kI GAGCTC 2 cut(s) 737, 775
Eco57I CTGAAG 2 cut(s) 665, 978
Eco81I CCTNAGG 1 cut(s) 1128
EcoICRI GAGCTC 2 cut(s) 737, 775
EcoO109I RGGNCCY 3 cut(s) 195, 422, 664
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 323, 1009
EcoT14I CCWWGG 1 cut(s) 1105
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 3 cut(s) 577, 739, 777
ErhI CCWWGG 1 cut(s) 1105
FaeI CATG 5 cut(s) 214, 235, 674, 765, 1109
FaqI GGGAC 2 cut(s) 194, 990
FatI CATG 5 cut(s) 210, 231, 670, 761, 1105
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 2 cut(s) 155, 552
FokI GGATG 4 cut(s) 400, 470, 834, 842
FriOI GRGCYC 3 cut(s) 577, 739, 777
Fsp4HI GCNGC 2 cut(s) 155, 552
FspBI CTAG 1 cut(s) 560
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 155, 552
HaeIII GGCC 3 cut(s) 196, 767, 1104
HapII CCGG 1 cut(s) 384
HhaI GCGC 1 cut(s) 83
Hin1II CATG 5 cut(s) 214, 235, 674, 765, 1109
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 348, 491, 758, 1096, 1167
HpaII CCGG 1 cut(s) 384
HphI GGTGA 3 cut(s) 45, 1033, 1075
Hpy166II GTNNAC 4 cut(s) 107, 295, 965, 1124
Hpy188I TCNGA 6 cut(s) 113, 286, 364, 684, 750, 1172
Hpy188III TCNNGA 5 cut(s) 75, 211, 275, 488, 851
Hpy8I GTNNAC 4 cut(s) 107, 295, 965, 1124
Hpy99I CGWCG 2 cut(s) 271, 972
HpyAV CCTTC 7 cut(s) 46, 66, 322, 599, 655, 658, 953
HpyCH4III ACNGT 2 cut(s) 946, 1063
HpyCH4V TGCA 5 cut(s) 9, 107, 590, 674, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 160, 214, 901
HpyF3I CTNAG 5 cut(s) 93, 150, 453, 776, 1128
Hsp92II CATG 5 cut(s) 214, 235, 674, 765, 1109
HspAI GCGC 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
LmnI GCTCC 4 cut(s) 29, 102, 580, 734
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 2 cut(s) 68, 599
MaeI CTAG 1 cut(s) 560
MaeIII GTNAC 2 cut(s) 136, 1063
MalI GATC 6 cut(s) 73, 438, 465, 855, 883, 1008
MboI GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
MboII GAAGA 2 cut(s) 81, 247
MflI RGATCY 4 cut(s) 71, 853, 881, 1006
MhlI GDGCHC 4 cut(s) 109, 577, 739, 777
MlsI TGGCCA 1 cut(s) 1104
MluCI AATT 5 cut(s) 309, 476, 686, 797, 822
MluNI TGGCCA 1 cut(s) 1104
MlyI GAGTC 3 cut(s) 357, 500, 752
Mox20I TGGCCA 1 cut(s) 1104
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 2 cut(s) 332, 480
MscI TGGCCA 1 cut(s) 1104
MseI TTAA 2 cut(s) 636, 863
Msp20I TGGCCA 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 3 cut(s) 325, 385, 1011
Mva1269I GAATGC 1 cut(s) 9
MvaI CCWGG 2 cut(s) 325, 1011
MwoI GCNNNNNNNGC 4 cut(s) 15, 160, 214, 901
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 1105
NdeI CATATG 1 cut(s) 502
NdeII GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
NlaIII CATG 5 cut(s) 214, 235, 674, 765, 1109
NlaIV GGNNCC 6 cut(s) 25, 197, 423, 576, 978, 1008
NmuCI GTSAC 1 cut(s) 1063
NsiI ATGCAT 1 cut(s) 676
PagI TCATGA 1 cut(s) 210
PctI GAATGC 1 cut(s) 9
PdmI GAANNNNTTC 2 cut(s) 332, 480
PfeI GAWTC 2 cut(s) 1096, 1167
PflFI GACNNNGTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 2 cut(s) 156, 553
PleI GAGTC 3 cut(s) 356, 499, 752
PpsI GAGTC 3 cut(s) 356, 499, 752
PpuMI RGGWCCY 2 cut(s) 422, 664
Psp124BI GAGCTC 2 cut(s) 739, 777
Psp5II RGGWCCY 2 cut(s) 422, 664
Psp6I CCWGG 2 cut(s) 323, 1009
PspGI CCWGG 2 cut(s) 323, 1009
PspN4I GGNNCC 6 cut(s) 25, 197, 423, 576, 978, 1008
PspPI GGNCC 5 cut(s) 195, 422, 664, 765, 977
PspPPI RGGWCCY 2 cut(s) 422, 664
PsuI RGATCY 4 cut(s) 71, 853, 881, 1006
PsyI GACNNNGTC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 230, 1123
RsaNI GTAC 2 cut(s) 229, 1122
SacI GAGCTC 2 cut(s) 739, 777
SaqAI TTAA 2 cut(s) 636, 863
SatI GCNGC 2 cut(s) 155, 552
Sau3AI GATC 6 cut(s) 71, 436, 463, 853, 881, 1006
Sau96I GGNCC 5 cut(s) 195, 422, 664, 765, 977
SchI GAGTC 3 cut(s) 357, 500, 752
ScrFI CCNGG 3 cut(s) 325, 385, 1011
SduI GDGCHC 4 cut(s) 109, 577, 739, 777
SfaNI GCATC 2 cut(s) 68, 599
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 3 cut(s) 422, 664, 977
SmlI CTYRAG 3 cut(s) 486, 738, 896
SmoI CTYRAG 3 cut(s) 486, 738, 896
Sse9I AATT 5 cut(s) 309, 476, 686, 797, 822
SsiI CCGC 2 cut(s) 155, 170
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 560
SstI GAGCTC 2 cut(s) 739, 777
StyD4I CCNGG 3 cut(s) 323, 383, 1009
StyI CCWWGG 1 cut(s) 1105
TaaI ACNGT 2 cut(s) 946, 1063
TaqI TCGA 3 cut(s) 306, 698, 715
TasI AATT 5 cut(s) 309, 476, 686, 797, 822
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 1096, 1167
Tru1I TTAA 2 cut(s) 636, 863
Tru9I TTAA 2 cut(s) 636, 863
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 1063
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 1063
TspDTI ATGAA 4 cut(s) 248, 404, 603, 1027
TspGWI ACGGA 2 cut(s) 255, 360
TspRI CASTG 1 cut(s) 561
Tth111I GACNNNGTC 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 506
VneI GTGCAC 1 cut(s) 105
VpaK11BI GGWCC 3 cut(s) 422, 664, 977
XapI RAATTY 4 cut(s) 309, 476, 686, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 964
XmnI GAANNNNTTC 2 cut(s) 332, 480
XspI CTAG 1 cut(s) 560
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.