Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Reverse (-)

48192287 .. 48202786

Gene Structure 10500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0366300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGGGAAATTTCGGAGCAGAGTTCGTGGTCGACCCAGAATTCGTGGTCGAGACTTTGAAGGATGCCTTCCATGGTATGACTTTCAAAGCATTGAATACTTATGGACGAGACCTCGTTAAGCAGGCTGCTAGAAAGCTTGACCCAGTTATTGGCCGAGATGACGAGATAAGGAGGGTGGTTCAGAATCTCTTAAGGAGAACTAAGAACAACCCGATTCTTATTGGAGAACCAGGAGTTGGAAAAACTGCTGTAGTTGAAGGCTTGGCTCAGAGGATATTAACAGGTGATGTCCCAAGTAGTCTTGCAGATGTTAGGGTCATAGAATTGGATATGGGTGCTTTGCTGGCAGGAACACAGTATAGAGGAGAACTTGAGAAGAGGTTTAAGGCTGTGTTGAAAGAAGTGGAAAAGGCTAATGGTAAGGTGATTCTATTCATTGATGAGATTCACCTTGTTCTTGGTTCTGGTACAGCTGATGGGTCTAATATGAATCCTGCCAACCTCCTTAAACCAATGCTTGCTAGAGGTCAGCTGCGGTGCATTGGTGCGACAACTCTTGAGGAGTATAGCAAATTTGTAGCTAAGGATGCTGCATTTGAGAGAAGGTTTCAAAAGATTTTTGTGGCTGAACCTAGTGTTGAAGACACAATCAGTATCCTTCGAGGCCTGAAAGAAAGATATGAAAGTCACCATGGTGTTCGAATTTTGGACCAGACCCTGGTTGTTGCTGCGCAACTTTCAAGCCAATACATCACAGGGCGTCGTCTCCCTGACAAGGCAATTGATCTAGTTGATGAAGCTTGTGCAAATGTGAGAGTCCGACTTGATAGTCGACCTGAAGAAATTGATTACCTTGAAAGAAAAAGAATGCACCTGCAAGTTGAGGTCCACGCACTTGATAAAGAAGAGGACAGACGTAGCAAAGCTCGTCTTTTTGAAATTCGGAAGGAGCTTGATGAATTGAGGGACAAGCTTGAGCCCTTGCTCATAAAATATAAAAACGAGAAGGAAGGGATTGATCAAGTTCACCTGCTTAAGCAGAAGCGTGAAAAGCTCTTATTGGCTTTAGCAGAAGCTGAAAGAAATTGTGATTTTGCCAAAGCTGCCGACTTGCGTTATGGAGCTATTGAGGAAATTGAATCTGCCATTTCAAAACTTGAAGGGAGCAGCAATGAAAACATGATGTTGACAGAGACTGTTATTCCAGAACACATTGCAGAGGTTGTAAGCCGTTCTACTGGCATACCTGTGACAAGGCTGGACCAGAATGGGAAAGAGAGGTTGATTGTACTTGCTGAGAGGTTGCATAAAAGAGTAGTTGGACAAGAACGTGCAGTTGATGCTGTTGCAGCCGCGGTGTTGAGGTCAAGAGCTGGCTTAGGACGGTCAGAACAGCCAACTGGTTCATTCCTATTCCTGGGTCCAACTGGTGTCGGAAAAACTGAGCTTGCCAAGGCTCTTGCTCAGCAACTCTTTGATGATGAAAATTTGATTGTGAGAATAGACATGTCTGAGTACATGGAGCATCACTCTGTTTCACGTTTGATAGGTGCTCCTCCCGGGTACGTTGGTCATGAGGATGGTGGGCAACTCACTGAGGCCATAAGACGAAGACCTTATAGTGTTGTATTATTTGATGAAATGGAAAAGGCCCATCCCTCCGTGTTTAATATTCTCTTACAAGTGTTAGGCGATGCAAGGTTAACTGACACACAAGGTCGTCTTGCTGACTTTAAGAATACTATGATTATTATGACCTCTAACCTTGGAGCAAAGCATCTCTTGTCTGGTTTAGAGGGAGAGTGTTCAATGGAAGTTGCTCATGATCAAGTTATGCAAGAGGTGAGAAGTCACTTTAGTCCTGAATTTCTAAATCGGCTCGATGAGATTGTCATATTTGATCCTCTTTCACATGAGCATCTAACGAAAGTCGCCAGGTTGCAAATGAAGGATGTTGCAATCCGACTTGCTGACAGGGGTATTGCTTTGGCATTGACTGATGCAGCATTTGATTTTATTATGGACAAGAGTTATGATCGGGTTTATGGTGCTAGACCCATCAGAAGATGGCTTGAGAGGAACGTAGTAACAGAGTTATCAAGAATGCTGATTAGAGGAGAGATAGATGAGAACTCAACTATATATATAGATGCGAGACCAAATGGAAGTGAGTTGCTGTATCGGGTGGAGAAGAACGGAGGGCTCGTTAATGCAGTCACAGGTCAAAAGACAGATGTATTGATCCAACTTGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

752

Amino Acids

84.29

Weight (kDa)

6.01

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	49 - 95	6.3e-06	AAA ATPase domain
NBD_SMAX1	PF23569	54 - 155	4.3e-09	SMAX1 nucleotide binding domain
AAA	PF00004	72 - 189	2.4e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	212 - 311	1.1e-32	AAA lid domain
AAA_2	PF07724	466 - 630	5.4e-66	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	470 - 590	6.2e-11	AAA domain (dynein-related subfamily)
AAA	PF00004	471 - 596	1.5e-08	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	636 - 715	8.7e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	882, 1038
AasI	GACNNNNNNGTC	1 cut(s)	828
Acc16I	TGCGCA	1 cut(s)	732
Acc36I	ACCTGC	2 cut(s)	882, 1038
AccB7I	CCANNNNNTGG	3 cut(s)	149, 236, 718
AccI	GTMKAC	2 cut(s)	30, 832
AccII	CGCG	1 cut(s)	1355
AciI	CCGC	3 cut(s)	535, 1353, 1355
AclWI	GGATC	2 cut(s)	1895, 2236
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	7 cut(s)	7, 38, 572, 702, 939, 1486, 1865
AcuI	CTGAAG	1 cut(s)	858
AcyI	GRCGYC	1 cut(s)	760
AfaI	GTAC	4 cut(s)	469, 1290, 1517, 1565
AfiI	CCNNNNNNNGG	5 cut(s)	149, 236, 718, 775, 1417
AflII	CTTAAG	2 cut(s)	190, 1034
AflIII	ACRYGT	1 cut(s)	1506
AjnI	CCWGG	4 cut(s)	229, 717, 1416, 1934
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AleI	CACNNNNGTG	1 cut(s)	693
Alw21I	GWGCWC	1 cut(s)	1555
Alw26I	GTCTC	5 cut(s)	44, 102, 770, 1187, 2149
AlwI	GGATC	2 cut(s)	1895, 2236
AlwNI	CAGNNNCTG	3 cut(s)	718, 1076, 1196
Ama87I	CYCGRG	1 cut(s)	1559
AoxI	GGCC	4 cut(s)	151, 664, 1599, 1650
ApeKI	GCWGC	8 cut(s)	125, 532, 590, 728, 1103, 1167, 1349, 2003
ApoI	RAATTY	7 cut(s)	7, 38, 572, 702, 939, 1486, 1865
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	5 cut(s)	709, 886, 1261, 1421, 1651
AsuC2I	CCSGG	2 cut(s)	1560, 1561
AsuHPI	GGTGA	6 cut(s)	296, 436, 440, 680, 1019, 1855
AsuII	TTCGAA	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	1559
AvaII	GGWCC	4 cut(s)	709, 886, 1261, 1421
BaeI	ACNNNNGTAYC	2 cut(s)	1555, 1588
BanII	GRGCYC	2 cut(s)	981, 2205
BbsI	GAAGAC	2 cut(s)	648, 1618
Bbv12I	GWGCWC	1 cut(s)	1555
BbvI	GCAGC	8 cut(s)	112, 519, 577, 715, 1090, 1179, 1361, 2015
BccI	CCATC	5 cut(s)	470, 1574, 1662, 2061, 2066
BceAI	ACGGC	1 cut(s)	1215
BciT130I	CCWGG	4 cut(s)	231, 719, 1418, 1936
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	2 cut(s)	1018, 1825
BcnI	CCSGG	2 cut(s)	1560, 1561
BcoDI	GTCTC	5 cut(s)	44, 102, 770, 1187, 2149
BfaI	CTAG	5 cut(s)	129, 522, 633, 788, 2052
BfmI	CTRYAG	1 cut(s)	249
BfrI	CTTAAG	2 cut(s)	190, 1034
BfuAI	ACCTGC	2 cut(s)	882, 1038
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	9 cut(s)	126, 533, 591, 729, 1104, 1168, 1350, 1353, 2004
BlpI	GCTNAGC	1 cut(s)	1464
BlsI	GCNGC	9 cut(s)	127, 534, 592, 730, 1105, 1169, 1351, 1354, 2005
Bme1390I	CCNGG	6 cut(s)	231, 719, 1418, 1560, 1561, 1936
Bme18I	GGWCC	4 cut(s)	709, 886, 1261, 1421
BmeT110I	CYCGRG	1 cut(s)	1559
BmgT120I	GGNCC	5 cut(s)	709, 886, 1261, 1421, 1651
BmiI	GGNNCC	1 cut(s)	1422
BmrFI	CCNGG	6 cut(s)	231, 719, 1418, 1560, 1561, 1936
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	9 cut(s)	52, 577, 1330, 1534, 1684, 1786, 1927, 1990, 2140
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	648, 1618
BplI	GAGNNNNNCTC	2 cut(s)	1514, 1546
Bpu10I	CCTNAGC	2 cut(s)	582, 1378
Bpu1102I	GCTNAGC	1 cut(s)	1464
Bpu14I	TTCGAA	1 cut(s)	700
BpuEI	CTTGAG	4 cut(s)	392, 578, 995, 2093
BpuMI	CCSGG	2 cut(s)	1560, 1561
BsaHI	GRCGYC	1 cut(s)	760
BsaI	GGTCTC	2 cut(s)	102, 2149
BsaJI	CCNNGG	8 cut(s)	70, 691, 717, 1353, 1417, 1452, 1559, 1765
BsaXI	ACNNNNNCTCC	2 cut(s)	2190, 2220
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 236, 718, 775, 1417
Bse1I	ACTGG	4 cut(s)	143, 1243, 1405, 1432
Bse3DI	GCAATG	2 cut(s)	1177, 1212
BseBI	CCWGG	4 cut(s)	231, 719, 1418, 1936
BseDI	CCNNGG	8 cut(s)	70, 691, 717, 1353, 1417, 1452, 1559, 1765
BseGI	GGATG	5 cut(s)	67, 592, 1585, 1654, 1957
BseLI	CCNNNNNNNGG	5 cut(s)	149, 236, 718, 775, 1417
BseMI	GCAATG	2 cut(s)	1177, 1212
BseMII	CTCAG	6 cut(s)	281, 1287, 1434, 1478, 1503, 1587
BseNI	ACTGG	4 cut(s)	143, 1243, 1405, 1432
BseRI	GAGGAG	4 cut(s)	378, 575, 1545, 2130
BseXI	GCAGC	8 cut(s)	112, 519, 577, 715, 1090, 1179, 1361, 2015
BsgI	GTGCAG	1 cut(s)	1353
Bsh1236I	CGCG	1 cut(s)	1355
BshFI	GGCC	4 cut(s)	153, 666, 1601, 1652
BsiHKAI	GWGCWC	1 cut(s)	1555
BsiHKCI	CYCGRG	1 cut(s)	1559
BsiSI	CCGG	1 cut(s)	1560
BslFI	GGGAC	2 cut(s)	275, 980
BslI	CCNNNNNNNGG	5 cut(s)	149, 236, 718, 775, 1417
BsmAI	GTCTC	5 cut(s)	44, 102, 770, 1187, 2149
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	2 cut(s)	275, 980
BsmI	GAATGC	2 cut(s)	873, 2109
BsnI	GGCC	4 cut(s)	153, 666, 1601, 1652
Bso31I	GGTCTC	2 cut(s)	102, 2149
BsoBI	CYCGRG	1 cut(s)	1559
Bsp119I	TTCGAA	1 cut(s)	700
Bsp1286I	GDGCHC	3 cut(s)	981, 1555, 2205
Bsp143I	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
Bsp1720I	GCTNAGC	1 cut(s)	1464
Bsp19I	CCATGG	2 cut(s)	70, 691
BspACI	CCGC	3 cut(s)	535, 1353, 1355
BspANI	GGCC	4 cut(s)	153, 666, 1601, 1652
BspCNI	CTCAG	6 cut(s)	280, 1288, 1435, 1477, 1504, 1588
BspFNI	CGCG	1 cut(s)	1355
BspHI	TCATGA	2 cut(s)	1573, 1822
BspLI	GGNNCC	1 cut(s)	1422
BspMI	ACCTGC	2 cut(s)	882, 1038
BspPI	GGATC	2 cut(s)	1895, 2236
BspT104I	TTCGAA	1 cut(s)	700
BspTI	CTTAAG	2 cut(s)	190, 1034
BspTNI	GGTCTC	2 cut(s)	102, 2149
BsrDI	GCAATG	2 cut(s)	1177, 1212
BsrI	ACTGG	4 cut(s)	143, 1243, 1405, 1432
BssECI	CCNNGG	8 cut(s)	70, 691, 717, 1353, 1417, 1452, 1559, 1765
BssMI	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
BssNI	GRCGYC	1 cut(s)	760
BssT1I	CCWWGG	4 cut(s)	70, 691, 1452, 1765
Bst2UI	CCWGG	4 cut(s)	231, 719, 1418, 1936
Bst4CI	ACNGT	3 cut(s)	357, 1198, 1386
Bst6I	CTCTTC	2 cut(s)	371, 900
BstACI	GRCGYC	1 cut(s)	760
BstAFI	CTTAAG	2 cut(s)	190, 1034
BstAPI	GCANNNNNTGC	1 cut(s)	1340
BstBI	TTCGAA	1 cut(s)	700
BstC8I	GCNNGC	5 cut(s)	123, 345, 519, 1375, 1449
BstDEI	CTNAG	9 cut(s)	201, 267, 582, 1296, 1378, 1443, 1464, 1512, 1596
BstDSI	CCRYGG	3 cut(s)	70, 691, 1353
BstF5I	GGATG	5 cut(s)	67, 592, 1585, 1654, 1957
BstFNI	CGCG	1 cut(s)	1355
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	6 cut(s)	787, 1021, 1828, 1903, 2038, 2244
BstMAI	GTCTC	5 cut(s)	44, 102, 770, 1187, 2149
BstMBI	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
BstMWI	GCNNNNNNNGC	6 cut(s)	344, 587, 1051, 1103, 1340, 1349
BstNI	CCWGG	4 cut(s)	231, 719, 1418, 1936
BstNSI	RCATGY	1 cut(s)	1510
BstSCI	CCNGG	6 cut(s)	229, 717, 1416, 1558, 1559, 1934
BstSFI	CTRYAG	1 cut(s)	249
BstUI	CGCG	1 cut(s)	1355
BstV1I	GCAGC	8 cut(s)	112, 519, 577, 715, 1090, 1179, 1361, 2015
BstV2I	GAAGAC	2 cut(s)	648, 1618
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	153, 666, 1601, 1652
BtgI	CCRYGG	3 cut(s)	70, 691, 1353
BtgZI	GCGATG	1 cut(s)	1707
BtsCI	GGATG	5 cut(s)	67, 592, 1585, 1654, 1957
BtsIMutI	CAGTG	1 cut(s)	1593
BveI	ACCTGC	2 cut(s)	882, 1038
Cac8I	GCNNGC	5 cut(s)	123, 345, 519, 1375, 1449
CaiI	CAGNNNCTG	3 cut(s)	718, 1076, 1196
CciI	TCATGA	2 cut(s)	1573, 1822
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	5 cut(s)	709, 886, 1261, 1421, 1651
Cfr42I	CCGCGG	1 cut(s)	1356
Cfr9I	CCCGGG	1 cut(s)	1559
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	4 cut(s)	468, 1289, 1516, 1564
CviAII	CATG	8 cut(s)	71, 692, 1180, 1507, 1519, 1574, 1823, 1913
CviQI	GTAC	4 cut(s)	468, 1289, 1516, 1564
DdeI	CTNAG	9 cut(s)	201, 267, 582, 1296, 1378, 1443, 1464, 1512, 1596
DpnI	GATC	6 cut(s)	786, 1020, 1827, 1902, 2037, 2243
DpnII	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
DrdI	GACNNNNNNGTC	1 cut(s)	828
DseDI	GACNNNNNNGTC	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	371, 900
EarI	CTCTTC	2 cut(s)	371, 900
Eco130I	CCWWGG	4 cut(s)	70, 691, 1452, 1765
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	2 cut(s)	981, 2205
Eco31I	GGTCTC	2 cut(s)	102, 2149
Eco47I	GGWCC	4 cut(s)	709, 886, 1261, 1421
Eco57I	CTGAAG	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	1559
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	229, 717, 1416, 1934
EcoT14I	CCWWGG	4 cut(s)	70, 691, 1452, 1765
EcoT38I	GRGCYC	2 cut(s)	981, 2205
ErhI	CCWWGG	4 cut(s)	70, 691, 1452, 1765
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	8 cut(s)	74, 695, 1183, 1510, 1522, 1577, 1826, 1916
FalI	AAGNNNNNCTT	8 cut(s)	50, 82, 915, 947, 1707, 1739, 1766, 1798
FaqI	GGGAC	2 cut(s)	275, 980
FatI	CATG	8 cut(s)	70, 691, 1179, 1506, 1518, 1573, 1822, 1912
FbaI	TGATCA	2 cut(s)	1018, 1825
FblI	GTMKAC	2 cut(s)	30, 832
Fnu4HI	GCNGC	9 cut(s)	126, 533, 591, 729, 1104, 1168, 1350, 1353, 2004
FokI	GGATG	5 cut(s)	74, 599, 1592, 1641, 1964
FriOI	GRGCYC	2 cut(s)	981, 2205
Fsp4HI	GCNGC	9 cut(s)	126, 533, 591, 729, 1104, 1168, 1350, 1353, 2004
FspBI	CTAG	5 cut(s)	129, 522, 633, 788, 2052
FspI	TGCGCA	1 cut(s)	732
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	9 cut(s)	126, 533, 591, 729, 1104, 1168, 1350, 1353, 2004
HaeIII	GGCC	4 cut(s)	153, 666, 1601, 1652
HapII	CCGG	1 cut(s)	1560
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	1 cut(s)	733
Hin1I	GRCGYC	1 cut(s)	760
Hin1II	CATG	8 cut(s)	74, 695, 1183, 1510, 1522, 1577, 1826, 1916
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	4 cut(s)	31, 833, 1188, 1704
HindII	GTYRAC	4 cut(s)	31, 833, 1188, 1704
HindIII	AAGCTT	3 cut(s)	134, 798, 971
HinfI	GANTC	7 cut(s)	184, 214, 427, 445, 490, 816, 1139
HpaI	GTTAAC	1 cut(s)	1704
HpaII	CCGG	1 cut(s)	1560
HphI	GGTGA	6 cut(s)	296, 436, 440, 680, 1019, 1855
Hpy166II	GTNNAC	6 cut(s)	31, 833, 889, 1027, 1188, 1704
Hpy188III	TCNNGA	8 cut(s)	49, 557, 1205, 1368, 1574, 1823, 1862, 2100
Hpy8I	GTNNAC	6 cut(s)	31, 833, 889, 1027, 1188, 1704
Hpy99I	CGWCG	1 cut(s)	765
HpyCH4III	ACNGT	3 cut(s)	357, 1198, 1386
HpyCH4IV	ACGT	5 cut(s)	916, 1330, 1540, 1566, 2082
HpyF10VI	GCNNNNNNNGC	6 cut(s)	344, 587, 1051, 1103, 1340, 1349
HpyF3I	CTNAG	9 cut(s)	201, 267, 582, 1296, 1378, 1443, 1464, 1512, 1596
HpySE526I	ACGT	5 cut(s)	916, 1330, 1540, 1566, 2082
Hsp92I	GRCGYC	1 cut(s)	760
Hsp92II	CATG	8 cut(s)	74, 695, 1183, 1510, 1522, 1577, 1826, 1916
HspAI	GCGC	1 cut(s)	731
Ksp22I	TGATCA	2 cut(s)	1018, 1825
KspAI	GTTAAC	1 cut(s)	1704
KspI	CCGCGG	1 cut(s)	1356
Kzo9I	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
LmnI	GCTCC	7 cut(s)	14, 949, 1121, 1164, 1522, 1558, 1769
Lsp1109I	GCAGC	8 cut(s)	112, 519, 577, 715, 1090, 1179, 1361, 2015
LweI	GCATC	9 cut(s)	52, 577, 1330, 1534, 1684, 1786, 1927, 1990, 2140
MaeI	CTAG	5 cut(s)	129, 522, 633, 788, 2052
MaeII	ACGT	5 cut(s)	916, 1330, 1540, 1566, 2082
MaeIII	GTNAC	5 cut(s)	686, 1249, 1850, 2086, 2215
MalI	GATC	6 cut(s)	786, 1020, 1827, 1902, 2037, 2243
MboI	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
MboII	GAAGA	7 cut(s)	388, 653, 851, 917, 1623, 2076, 2203
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	3 cut(s)	981, 1555, 2205
MlyI	GAGTC	1 cut(s)	825
MmeI	TCCRAC	6 cut(s)	217, 844, 1300, 1414, 1448, 1987
MslI	CAYNNNNRTG	3 cut(s)	693, 1247, 1578
MspA1I	CMGCKG	3 cut(s)	473, 532, 1355
MspCI	CTTAAG	2 cut(s)	190, 1034
MspI	CCGG	1 cut(s)	1560
MspR9I	CCNGG	6 cut(s)	231, 719, 1418, 1560, 1561, 1936
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	2 cut(s)	873, 2109
MvaI	CCWGG	4 cut(s)	231, 719, 1418, 1936
MvnI	CGCG	1 cut(s)	1355
MwoI	GCNNNNNNNGC	6 cut(s)	344, 587, 1051, 1103, 1340, 1349
NciI	CCSGG	2 cut(s)	1560, 1561
NcoI	CCATGG	2 cut(s)	70, 691
NdeII	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
NlaIII	CATG	8 cut(s)	74, 695, 1183, 1510, 1522, 1577, 1826, 1916
NlaIV	GGNNCC	1 cut(s)	1422
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	4 cut(s)	686, 1249, 1850, 2215
NsbI	TGCGCA	1 cut(s)	732
NspI	RCATGY	1 cut(s)	1510
NspV	TTCGAA	1 cut(s)	700
OliI	CACNNNNGTG	1 cut(s)	693
PagI	TCATGA	2 cut(s)	1573, 1822
PaqCI	CACCTGC	2 cut(s)	882, 1038
PceI	AGGCCT	1 cut(s)	666
PciI	ACATGT	1 cut(s)	1506
PcsI	WCGNNNNNNNCGW	1 cut(s)	2202
PctI	GAATGC	2 cut(s)	873, 2109
PfeI	GAWTC	6 cut(s)	184, 214, 427, 445, 490, 1139
PflMI	CCANNNNNTGG	3 cut(s)	149, 236, 718
PkrI	GCNGC	9 cut(s)	127, 534, 592, 730, 1105, 1169, 1351, 1354, 2005
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
PscI	ACATGT	1 cut(s)	1506
Psp6I	CCWGG	4 cut(s)	229, 717, 1416, 1934
PspGI	CCWGG	4 cut(s)	229, 717, 1416, 1934
PspN4I	GGNNCC	1 cut(s)	1422
PspPI	GGNCC	5 cut(s)	709, 886, 1261, 1421, 1651
PstNI	CAGNNNCTG	3 cut(s)	718, 1076, 1196
PvuII	CAGCTG	2 cut(s)	473, 532
RsaI	GTAC	4 cut(s)	469, 1290, 1517, 1565
RsaNI	GTAC	4 cut(s)	468, 1289, 1516, 1564
RseI	CAYNNNNRTG	3 cut(s)	693, 1247, 1578
SacII	CCGCGG	1 cut(s)	1356
SalI	GTCGAC	2 cut(s)	29, 831
SatI	GCNGC	9 cut(s)	126, 533, 591, 729, 1104, 1168, 1350, 1353, 2004
Sau3AI	GATC	6 cut(s)	784, 1018, 1825, 1900, 2035, 2241
Sau96I	GGNCC	5 cut(s)	709, 886, 1261, 1421, 1651
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	6 cut(s)	231, 719, 1418, 1560, 1561, 1936
SduI	GDGCHC	3 cut(s)	981, 1555, 2205
SfaNI	GCATC	9 cut(s)	52, 577, 1330, 1534, 1684, 1786, 1927, 1990, 2140
SfcI	CTRYAG	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	1356
SfuI	TTCGAA	1 cut(s)	700
SgrBI	CCGCGG	1 cut(s)	1356
SinI	GGWCC	4 cut(s)	709, 886, 1261, 1421
SmaI	CCCGGG	1 cut(s)	1561
SmiMI	CAYNNNNRTG	3 cut(s)	693, 1247, 1578
SmlI	CTYRAG	6 cut(s)	190, 371, 557, 974, 1034, 2072
SmoI	CTYRAG	6 cut(s)	190, 371, 557, 974, 1034, 2072
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	3 cut(s)	535, 1353, 1355
SspI	AATATT	1 cut(s)	1672
SspMI	CTAG	5 cut(s)	129, 522, 633, 788, 2052
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	6 cut(s)	229, 717, 1416, 1558, 1559, 1934
StyI	CCWWGG	4 cut(s)	70, 691, 1452, 1765
TaaI	ACNGT	3 cut(s)	357, 1198, 1386
TaiI	ACGT	5 cut(s)	919, 1333, 1543, 1569, 2085
TaqI	TCGA	6 cut(s)	30, 48, 661, 700, 832, 1881
TatI	WGTACW	2 cut(s)	1288, 1515
TauI	GCSGC	1 cut(s)	1355
TfiI	GAWTC	6 cut(s)	184, 214, 427, 445, 490, 1139
TscAI	CASTG	1 cut(s)	1600
TseFI	GTSAC	4 cut(s)	686, 1249, 1850, 2215
TseI	GCWGC	8 cut(s)	125, 532, 590, 728, 1103, 1167, 1349, 2003
Tsp45I	GTSAC	4 cut(s)	686, 1249, 1850, 2215
TspGWI	ACGGA	2 cut(s)	1651, 2211
TspMI	CCCGGG	1 cut(s)	1559
TspRI	CASTG	1 cut(s)	1600
Van91I	CCANNNNNTGG	3 cut(s)	149, 236, 718
Vha464I	CTTAAG	2 cut(s)	190, 1034
VpaK11BI	GGWCC	4 cut(s)	709, 886, 1261, 1421
XapI	RAATTY	7 cut(s)	7, 38, 572, 702, 939, 1486, 1865
XceI	RCATGY	1 cut(s)	1510
XmaI	CCCGGG	1 cut(s)	1559
XmiI	GTMKAC	2 cut(s)	30, 832
XspI	CTAG	5 cut(s)	129, 522, 633, 788, 2052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.