Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Forward (+)

22848507 .. 22851294

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCTTGCATTCACAGTTACGGCTCCATAGCTTCCATCTCTCTTCCCACCTCCCCTTCCTTCAATCCAAGATCCAGATGCGCCCCCAAGCCTCGCTTCCTCTGCGCTGTCGGAGGGAGTGTGGCAGAAGCCCAAGTTGCGTCCATTGCTGAACCCCTTTTGCTCAATGCAGTTCGTGGGGACGATGTTGAGAGACCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGAGAAAGATCCGAAAATGTTGACCTCGTTGTTGAAATTTCGCTACAGCCCTGGAAGGTCTTCAAGCCTGATGGAGTCATTTTGTTCTCGGATATTTTAACTCCTCTTTCTGGGATGAATATACCATTTGACATTGTAAAAGGTAAGGGTCCTGTAATATTTGATCCTCTGCAGACTGCCGATGATGTTGGTCAAGTAAGAGAATTTGTTCCACAAGAATCAGTTCCATATGTTGGGGAAGCATTGACAATCTTGCGAAAAGAGGTAGATAATAAGGCAGCAGTGCTAGGTTTTGTCGGGGCTCCTTTCACCCTAGCATCATATGTCGTGGAAGGTGGTTCATCAAAGCATTTCTCAAAGATAAAGAGACTAGCCTTCTCTCAACCGAAGGTCCTCCATGCATTACTTCAAAAATTCACAACTTCGATGACAAAATATATTCGATACCAAGCTGATAGTGGAGCTCAAGCCGTTCAGATCTTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGTCTGCCATACTTGAAGCAAATTGTGGATGCTGTGAAAGAGACCCATCCAGATCTCCCCTTAATCCTTTACGCAAGCGGATCTGGGGGCTTGCTCGAGAGGCTGGCTTTGACAGGTGTTGATGTAGTTAGCTTGGACTGGACTGTTGATATGGCGGAAGGTAGAAGGCGACTGGGACCAAATATAGCAGTTCAAGGTAATGTCGATCCCGGTGTTCTCTTCGGTTCAAAAGAATTCATCACCAGCAGAATAAACGATACGGTGAGGAAAGCCGGTAGGGGGAAACATATATTGAATCTTGGCCACGGCATTGTAGTAGGTACACCCGAGGAGAACGTTGCTCATTTCTTTGAGGTCGCTAAAGATATCAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

377

Amino Acids

41.03

Weight (kDa)

6.2

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	53 - 77	9.9e-06	Uroporphyrinogen decarboxylase (URO-D)
URO-D	PF01208	77 - 373	4.5e-105	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	2 cut(s)	831, 908
AclI	AACGTT	1 cut(s)	1089
AclWI	GGATC	5 cut(s)	66, 228, 383, 841, 953
AcoI	YGGCCR	1 cut(s)	1054
AcsI	RAATTY	5 cut(s)	261, 428, 638, 749, 986
AfaI	GTAC	1 cut(s)	1075
AfiI	CCNNNNNNNGG	4 cut(s)	204, 335, 458, 1032
AgsI	TTSAA	8 cut(s)	64, 260, 289, 635, 769, 947, 981, 1048
AjnI	CCWGG	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	32, 677, 689, 885
AluI	AGCT	4 cut(s)	32, 677, 689, 885
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	3 cut(s)	187, 586, 788
AlwI	GGATC	5 cut(s)	66, 228, 383, 841, 953
AlwNI	CAGNNNCTG	1 cut(s)	1128
Ama87I	CYCGRG	2 cut(s)	848, 1079
AoxI	GGCC	2 cut(s)	717, 1054
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	5 cut(s)	261, 428, 638, 749, 986
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	3 cut(s)	284, 432, 447
AspLEI	GCGC	2 cut(s)	83, 107
AspS9I	GGNCC	4 cut(s)	374, 616, 717, 929
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	3 cut(s)	526, 985, 1027
AvaI	CYCGRG	2 cut(s)	848, 1079
AvaII	GGWCC	3 cut(s)	374, 616, 929
BalI	TGGCCA	1 cut(s)	1056
BanII	GRGCYC	2 cut(s)	529, 691
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	3 cut(s)	44, 290, 807
BceAI	ACGGC	3 cut(s)	37, 680, 1075
BciT130I	CCWGG	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	963
BcoDI	GTCTC	3 cut(s)	187, 586, 788
BfaI	CTAG	3 cut(s)	512, 539, 596
BfmI	CTRYAG	2 cut(s)	269, 395
BglII	AGATCT	2 cut(s)	702, 805
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	277, 963
Bme18I	GGWCC	3 cut(s)	374, 616, 929
BmeT110I	CYCGRG	2 cut(s)	848, 1079
BmgT120I	GGNCC	4 cut(s)	374, 616, 717, 929
BmiI	GGNNCC	4 cut(s)	25, 375, 528, 930
BmrFI	CCNGG	2 cut(s)	277, 963
BmrI	ACTGGG	2 cut(s)	194, 935
BmsI	GCATC	3 cut(s)	68, 551, 772
BmuI	ACTGGG	2 cut(s)	194, 935
BpiI	GAAGAC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	963
BsaI	GGTCTC	2 cut(s)	187, 788
BsaJI	CCNNGG	3 cut(s)	275, 1057, 1080
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 335, 458, 1032
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	3 cut(s)	200, 896, 930
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	275, 1057, 1080
BseGI	GGATG	3 cut(s)	345, 787, 799
BseLI	CCNNNNNNNGG	4 cut(s)	204, 335, 458, 1032
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	742
BseNI	ACTGG	3 cut(s)	200, 896, 930
BseRI	GAGGAG	2 cut(s)	318, 1097
BseXI	GCAGC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	719, 1056
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	2 cut(s)	848, 1079
BsiSI	CCGG	2 cut(s)	963, 1026
BslFI	GGGAC	2 cut(s)	194, 942
BslI	CCNNNNNNNGG	4 cut(s)	204, 335, 458, 1032
BsmAI	GTCTC	3 cut(s)	187, 586, 788
BsmFI	GGGAC	2 cut(s)	194, 942
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	719, 1056
Bso31I	GGTCTC	2 cut(s)	187, 788
BsoBI	CYCGRG	2 cut(s)	848, 1079
Bsp1286I	GDGCHC	2 cut(s)	529, 691
Bsp143I	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
BspACI	CCGC	2 cut(s)	831, 908
BspANI	GGCC	2 cut(s)	719, 1056
BspCNI	CTCAG	1 cut(s)	741
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	25, 375, 528, 930
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	5 cut(s)	66, 228, 383, 841, 953
BspTNI	GGTCTC	2 cut(s)	187, 788
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	1025
BsrI	ACTGG	3 cut(s)	200, 896, 930
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	3 cut(s)	275, 1057, 1080
BssMI	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	17, 898, 1015
Bst6I	CTCTTC	2 cut(s)	48, 977
BstC8I	GCNNGC	4 cut(s)	219, 829, 845, 858
BstDEI	CTNAG	1 cut(s)	728
BstDSI	CCRYGG	1 cut(s)	1057
BstF5I	GGATG	3 cut(s)	345, 787, 799
BstHHI	GCGC	2 cut(s)	83, 107
BstKTI	GATC	7 cut(s)	74, 236, 391, 705, 808, 836, 961
BstMAI	GTCTC	3 cut(s)	187, 586, 788
BstMBI	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 137, 146, 214, 853
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	275, 961
BstSFI	CTRYAG	2 cut(s)	269, 395
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	5 cut(s)	71, 233, 702, 805, 833
BstYI	RGATCY	5 cut(s)	71, 233, 702, 805, 833
BsuRI	GGCC	2 cut(s)	719, 1056
BtgI	CCRYGG	1 cut(s)	1057
BtsCI	GGATG	3 cut(s)	345, 787, 799
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	4 cut(s)	219, 829, 845, 858
CaiI	CAGNNNCTG	1 cut(s)	1128
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	83, 107
Cfr10I	RCCGGY	1 cut(s)	1025
Cfr13I	GGNCC	4 cut(s)	374, 616, 717, 929
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	1074
CviAII	CATG	3 cut(s)	211, 623, 714
CviQI	GTAC	1 cut(s)	1074
DdeI	CTNAG	1 cut(s)	728
DpnI	GATC	7 cut(s)	73, 235, 390, 704, 807, 835, 960
DpnII	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
EaeI	YGGCCR	1 cut(s)	1054
Eam1104I	CTCTTC	2 cut(s)	48, 977
EarI	CTCTTC	2 cut(s)	48, 977
EciI	GGCGGA	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	689
Eco24I	GRGCYC	2 cut(s)	529, 691
Eco31I	GGTCTC	2 cut(s)	187, 788
Eco32I	GATATC	1 cut(s)	1120
Eco47I	GGWCC	3 cut(s)	374, 616, 929
Eco53kI	GAGCTC	1 cut(s)	689
Eco88I	CYCGRG	2 cut(s)	848, 1079
EcoICRI	GAGCTC	1 cut(s)	689
EcoO109I	RGGNCCY	2 cut(s)	374, 616
EcoRI	GAATTC	2 cut(s)	749, 986
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	1120
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	529, 691
FaeI	CATG	3 cut(s)	214, 626, 717
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	194, 942
FatI	CATG	3 cut(s)	210, 622, 713
FauNDI	CATATG	2 cut(s)	454, 547
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	3 cut(s)	352, 786, 794
FriOI	GRGCYC	2 cut(s)	529, 691
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	3 cut(s)	512, 539, 596
GlaI	GCGC	2 cut(s)	82, 106
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	719, 1056
HapII	CCGG	2 cut(s)	963, 1026
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	83, 107
Hin1II	CATG	3 cut(s)	214, 626, 717
Hin6I	GCGC	2 cut(s)	81, 105
HinP1I	GCGC	2 cut(s)	81, 105
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	4 cut(s)	300, 443, 710, 1048
HpaII	CCGG	2 cut(s)	963, 1026
HphI	GGTGA	3 cut(s)	526, 985, 1027
Hpy166II	GTNNAC	2 cut(s)	247, 1076
Hpy188I	TCNGA	5 cut(s)	113, 238, 316, 702, 1124
Hpy188III	TCNNGA	4 cut(s)	75, 211, 803, 850
Hpy8I	GTNNAC	2 cut(s)	247, 1076
HpyAV	CCTTC	8 cut(s)	66, 70, 274, 551, 607, 610, 905, 912
HpyCH4III	ACNGT	3 cut(s)	17, 898, 1015
HpyCH4IV	ACGT	1 cut(s)	1089
HpyCH4V	TGCA	4 cut(s)	9, 170, 397, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 137, 146, 214, 853
HpyF3I	CTNAG	1 cut(s)	728
HpySE526I	ACGT	1 cut(s)	1089
Hsp92II	CATG	3 cut(s)	214, 626, 717
HspAI	GCGC	2 cut(s)	81, 105
Kzo9I	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
LmnI	GCTCC	3 cut(s)	29, 532, 686
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	3 cut(s)	68, 551, 772
MaeI	CTAG	3 cut(s)	512, 539, 596
MaeII	ACGT	1 cut(s)	1089
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	7 cut(s)	73, 235, 390, 704, 807, 835, 960
MboI	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
MboII	GAAGA	3 cut(s)	35, 277, 964
MflI	RGATCY	5 cut(s)	71, 233, 702, 805, 833
MhlI	GDGCHC	2 cut(s)	529, 691
MlsI	TGGCCA	1 cut(s)	1056
MluCI	AATT	6 cut(s)	261, 428, 638, 749, 774, 986
MluNI	TGGCCA	1 cut(s)	1056
MlyI	GAGTC	2 cut(s)	309, 704
MmeI	TCCRAC	1 cut(s)	91
Mox20I	TGGCCA	1 cut(s)	1056
Mph1103I	ATGCAT	1 cut(s)	628
MroXI	GAANNNNTTC	3 cut(s)	284, 432, 447
MscI	TGGCCA	1 cut(s)	1056
MseI	TTAA	2 cut(s)	323, 815
Msp20I	TGGCCA	1 cut(s)	1056
MspI	CCGG	2 cut(s)	963, 1026
MspR9I	CCNGG	2 cut(s)	277, 963
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	5 cut(s)	102, 137, 146, 214, 853
NciI	CCSGG	1 cut(s)	963
NdeI	CATATG	2 cut(s)	454, 547
NdeII	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
NlaIII	CATG	3 cut(s)	214, 626, 717
NlaIV	GGNNCC	4 cut(s)	25, 375, 528, 930
NsiI	ATGCAT	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	848
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	9
PdmI	GAANNNNTTC	3 cut(s)	284, 432, 447
PfeI	GAWTC	2 cut(s)	443, 1048
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	308, 704
PpsI	GAGTC	2 cut(s)	308, 704
PpuMI	RGGWCCY	2 cut(s)	374, 616
Psp124BI	GAGCTC	1 cut(s)	691
Psp1406I	AACGTT	1 cut(s)	1089
Psp5II	RGGWCCY	2 cut(s)	374, 616
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	4 cut(s)	25, 375, 528, 930
PspPI	GGNCC	4 cut(s)	374, 616, 717, 929
PspPPI	RGGWCCY	2 cut(s)	374, 616
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	1128
PsuI	RGATCY	5 cut(s)	71, 233, 702, 805, 833
RsaI	GTAC	1 cut(s)	1075
RsaNI	GTAC	1 cut(s)	1074
SacI	GAGCTC	1 cut(s)	691
SaqAI	TTAA	2 cut(s)	323, 815
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	7 cut(s)	71, 233, 388, 702, 805, 833, 958
Sau96I	GGNCC	4 cut(s)	374, 616, 717, 929
SchI	GAGTC	2 cut(s)	309, 704
ScrFI	CCNGG	2 cut(s)	277, 963
SduI	GDGCHC	2 cut(s)	529, 691
SfaNI	GCATC	3 cut(s)	68, 551, 772
SfcI	CTRYAG	2 cut(s)	269, 395
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	3 cut(s)	374, 616, 929
SlaI	CTCGAG	1 cut(s)	848
SmlI	CTYRAG	2 cut(s)	690, 848
SmoI	CTYRAG	2 cut(s)	690, 848
Sse9I	AATT	6 cut(s)	261, 428, 638, 749, 774, 986
SsiI	CCGC	2 cut(s)	831, 908
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	3 cut(s)	512, 539, 596
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	2 cut(s)	275, 961
TaaI	ACNGT	3 cut(s)	17, 898, 1015
TaiI	ACGT	1 cut(s)	1092
TaqI	TCGA	4 cut(s)	650, 667, 849, 957
TasI	AATT	6 cut(s)	261, 428, 638, 749, 774, 986
TfiI	GAWTC	2 cut(s)	443, 1048
Tru1I	TTAA	2 cut(s)	323, 815
Tru9I	TTAA	2 cut(s)	323, 815
TscAI	CASTG	1 cut(s)	513
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	356, 555, 979
TspRI	CASTG	1 cut(s)	513
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	374, 616, 929
XapI	RAATTY	5 cut(s)	261, 428, 638, 749, 986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XhoI	CTCGAG	1 cut(s)	848
XmnI	GAANNNNTTC	3 cut(s)	284, 432, 447
XspI	CTAG	3 cut(s)	512, 539, 596
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.