MD07G1231500.v1.1

Uroporphyrinogen decarboxylase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
30572887 .. 30575990
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1231500.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGCATCCAATCATGTCTTGCATTCACAGCTACGGCTCCATAGCTTCCATCTCTCTCCCCACCTCCCCTTCCTTCACTCCAAGATCCAGATGCGTCCCCAGGTCTCGCTTTCTCTGCGCCGTCGGAGTGAGTGTGGCAGAAGCCCAAGTTGCGTCCATTGCTGAGCCCCTTTTGCTCAATGCAGTTCGTGGGGACGATGTTGAGAGACCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTATCAAACTCTCTGCGAGAGGTACCCTTCCTTTCGAGAAAGATCCGAAAATGTTGACCTCGTCGTTGAAATTTCGCTACAGCCCTGGAAGGTCTTCAAGCCTGATGGAGTCATTTTGTTCTCGGATATTTTAACTCCTCTTTCTGGGATGAATATACCATTTGACATTGTAAAAGGTAAGGGTCCTGTAATATTTGATCCTCTGCAAACTGCCGATGATGTTGTTCAAGTAAGAGAATTTGTTCCACAAGAATCAGTTCCATATGTTGGGGAAGCGTTGACAATCTTGCGAAAAGAGGTAGATAATAAGGCAGCAGTGCTAGGTTTTGTCGGGGCTCCTTTCACCCTAGCATCATATGTTGTGGAAGGTGGTTCATCAAAGCATTTCTCAAAGATAAAGAGATTAGCCTTCTCTCAACCGAAGGTCCTTCATGCATTACTTCAAAAATTCACAACTTCGATGACAAAATATATTCGATACCAAGCTGATAGTGGAGCTCAAGCCGTTCAGATCTTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGCCTGCCATACTTGAAGCAAATTGTGGATGCTGTGAAAGAGACCCATCCAGATCTCCCTTTAATCCTTTACGCAAGCGGATCTGGGGGTTTGCTCGAGAGGCTGGCTCTGACAGGTGTTGATGTAGTTAGCTTGGACTGGACTGTTGATATGGCGGAAGGTAGAAGGCGACTGGGACCAAATATAGCAGTTCAAGGTAATGTGGATCCTGGTGTTCTCTTCGGTTCAAAAGAATTCATCACCAGCAGAATAAACGATACAGTGAGGAAAGCCGGTAGAGGGAAACATATTTTGAATCTTGGCCACGGCATTGTAGTAGGTACACCCGAGGAGAACGTTGCTCATTTCTTTGAGGTCGCTAAAGATATCAGATACTGA

Protein Analysis

397

Amino Acids

43.68

Weight (kDa)

6.72

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URO-D PF01208 57 - 393 2e-122 Uroporphyrinogen decarboxylase (URO-D)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012047)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 2 cut(s) 891, 968
AclI AACGTT 1 cut(s) 1149
AclWI GGATC 6 cut(s) 78, 288, 443, 901, 1013, 1026
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 5 cut(s) 321, 488, 698, 809, 1046
AfaI GTAC 3 cut(s) 242, 275, 1135
AfiI CCNNNNNNNGG 4 cut(s) 216, 395, 518, 1092
AgsI TTSAA 8 cut(s) 320, 349, 479, 695, 829, 1007, 1041, 1108
AjnI CCWGG 3 cut(s) 98, 335, 1021
AluBI AGCT 5 cut(s) 30, 44, 737, 749, 945
AluI AGCT 5 cut(s) 30, 44, 737, 749, 945
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 3 cut(s) 108, 199, 848
AlwI GGATC 6 cut(s) 78, 288, 443, 901, 1013, 1026
AlwNI CAGNNNCTG 1 cut(s) 1188
Ama87I CYCGRG 2 cut(s) 908, 1139
AoxI GGCC 2 cut(s) 777, 1114
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 5 cut(s) 321, 488, 698, 809, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
Asp700I GAANNNNTTC 3 cut(s) 344, 492, 507
Asp718I GGTACC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 4 cut(s) 434, 676, 777, 989
AsuHPI GGTGA 2 cut(s) 586, 1045
AvaI CYCGRG 2 cut(s) 908, 1139
AvaII GGWCC 3 cut(s) 434, 676, 989
BalI TGGCCA 1 cut(s) 1116
BamHI GGATCC 1 cut(s) 1018
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 3 cut(s) 168, 589, 751
BbsI GAAGAC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 575
BccI CCATC 3 cut(s) 56, 350, 867
BceAI ACGGC 4 cut(s) 49, 104, 740, 1135
BciT130I CCWGG 3 cut(s) 100, 337, 1023
BcoDI GTCTC 3 cut(s) 108, 199, 848
BfaI CTAG 2 cut(s) 572, 599
BfmI CTRYAG 1 cut(s) 329
BglII AGATCT 2 cut(s) 762, 865
BisI GCNGC 1 cut(s) 564
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 100, 337, 1023
Bme18I GGWCC 3 cut(s) 434, 676, 989
BmeT110I CYCGRG 2 cut(s) 908, 1139
BmgT120I GGNCC 4 cut(s) 434, 676, 777, 989
BmiI GGNNCC 6 cut(s) 37, 275, 435, 588, 990, 1020
BmrFI CCNGG 3 cut(s) 100, 337, 1023
BmrI ACTGGG 2 cut(s) 206, 995
BmsI GCATC 4 cut(s) 13, 80, 611, 832
BmuI ACTGGG 2 cut(s) 206, 995
BpiI GAAGAC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 904, 936
Bpu1102I GCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 735
BsaI GGTCTC 3 cut(s) 108, 199, 848
BsaJI CCNNGG 4 cut(s) 98, 335, 1117, 1140
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 395, 518, 1092
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 3 cut(s) 212, 956, 990
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 3 cut(s) 100, 337, 1023
BseDI CCNNGG 4 cut(s) 98, 335, 1117, 1140
BseGI GGATG 4 cut(s) 4, 405, 847, 859
BseLI CCNNNNNNNGG 4 cut(s) 216, 395, 518, 1092
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 153, 802
BseNI ACTGG 3 cut(s) 212, 956, 990
BseRI GAGGAG 2 cut(s) 378, 1157
BseXI GCAGC 1 cut(s) 575
BshFI GGCC 2 cut(s) 779, 1116
BshNI GGYRCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 751
BsiHKCI CYCGRG 2 cut(s) 908, 1139
BsiSI CCGG 1 cut(s) 1086
BslFI GGGAC 3 cut(s) 80, 206, 1002
BslI CCNNNNNNNGG 4 cut(s) 216, 395, 518, 1092
BsmAI GTCTC 3 cut(s) 108, 199, 848
BsmFI GGGAC 3 cut(s) 80, 206, 1002
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 2 cut(s) 779, 1116
Bso31I GGTCTC 3 cut(s) 108, 199, 848
BsoBI CYCGRG 2 cut(s) 908, 1139
Bsp1286I GDGCHC 3 cut(s) 168, 589, 751
Bsp143I GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 2 cut(s) 891, 968
BspANI GGCC 2 cut(s) 779, 1116
BspCNI CTCAG 2 cut(s) 154, 801
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 6 cut(s) 37, 275, 435, 588, 990, 1020
BspPI GGATC 6 cut(s) 78, 288, 443, 901, 1013, 1026
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 3 cut(s) 108, 199, 848
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 3 cut(s) 212, 956, 990
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 4 cut(s) 98, 335, 1117, 1140
BssMI GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
Bst2UI CCWGG 3 cut(s) 100, 337, 1023
Bst4CI ACNGT 2 cut(s) 958, 1075
Bst6I CTCTTC 2 cut(s) 242, 1037
BstC8I GCNNGC 4 cut(s) 231, 818, 889, 918
BstDEI CTNAG 2 cut(s) 162, 788
BstDSI CCRYGG 1 cut(s) 1117
BstF5I GGATG 4 cut(s) 4, 405, 847, 859
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 7 cut(s) 86, 296, 451, 765, 868, 896, 1021
BstMAI GTCTC 3 cut(s) 108, 199, 848
BstMBI GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
BstMWI GCNNNNNNNGC 7 cut(s) 27, 114, 149, 158, 172, 226, 913
BstNI CCWGG 3 cut(s) 100, 337, 1023
BstSCI CCNGG 3 cut(s) 98, 335, 1021
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 575
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 6 cut(s) 83, 293, 762, 865, 893, 1018
BstYI RGATCY 6 cut(s) 83, 293, 762, 865, 893, 1018
BsuRI GGCC 2 cut(s) 779, 1116
BtgI CCRYGG 1 cut(s) 1117
BtsCI GGATG 4 cut(s) 4, 405, 847, 859
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 573, 1080
Cac8I GCNNGC 4 cut(s) 231, 818, 889, 918
CaiI CAGNNNCTG 1 cut(s) 1188
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 4 cut(s) 434, 676, 777, 989
CseI GACGC 2 cut(s) 82, 141
Csp6I GTAC 3 cut(s) 241, 274, 1134
CviAII CATG 5 cut(s) 13, 223, 244, 683, 774
CviQI GTAC 3 cut(s) 241, 274, 1134
DdeI CTNAG 2 cut(s) 162, 788
DpnI GATC 7 cut(s) 85, 295, 450, 764, 867, 895, 1020
DpnII GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
EaeI YGGCCR 1 cut(s) 1114
Eam1104I CTCTTC 2 cut(s) 242, 1037
EarI CTCTTC 2 cut(s) 242, 1037
EciI GGCGGA 1 cut(s) 983
Ecl136II GAGCTC 1 cut(s) 749
Eco24I GRGCYC 3 cut(s) 168, 589, 751
Eco31I GGTCTC 3 cut(s) 108, 199, 848
Eco32I GATATC 1 cut(s) 1180
Eco47I GGWCC 3 cut(s) 434, 676, 989
Eco53kI GAGCTC 1 cut(s) 749
Eco88I CYCGRG 2 cut(s) 908, 1139
EcoICRI GAGCTC 1 cut(s) 749
EcoO109I RGGNCCY 2 cut(s) 434, 676
EcoRI GAATTC 2 cut(s) 809, 1046
EcoRII CCWGG 3 cut(s) 98, 335, 1021
EcoRV GATATC 1 cut(s) 1180
EcoT22I ATGCAT 2 cut(s) 6, 688
EcoT38I GRGCYC 3 cut(s) 168, 589, 751
FaeI CATG 5 cut(s) 16, 226, 247, 686, 777
FaqI GGGAC 3 cut(s) 80, 206, 1002
FatI CATG 5 cut(s) 12, 222, 243, 682, 773
FauNDI CATATG 2 cut(s) 514, 607
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 3 cut(s) 412, 846, 854
FriOI GRGCYC 3 cut(s) 168, 589, 751
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 2 cut(s) 572, 599
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 564
HaeIII GGCC 2 cut(s) 779, 1116
HapII CCGG 1 cut(s) 1086
HgaI GACGC 2 cut(s) 82, 141
HhaI GCGC 1 cut(s) 119
Hin1II CATG 5 cut(s) 16, 226, 247, 686, 777
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 307, 531
HindII GTYRAC 2 cut(s) 307, 531
HinfI GANTC 4 cut(s) 360, 503, 770, 1108
HpaII CCGG 1 cut(s) 1086
HphI GGTGA 2 cut(s) 586, 1045
Hpy166II GTNNAC 3 cut(s) 307, 531, 1136
Hpy188I TCNGA 6 cut(s) 125, 298, 376, 762, 924, 1184
Hpy188III TCNNGA 5 cut(s) 87, 223, 287, 863, 910
Hpy8I GTNNAC 3 cut(s) 307, 531, 1136
Hpy99I CGWCG 2 cut(s) 125, 317
HpyCH4III ACNGT 2 cut(s) 958, 1075
HpyCH4IV ACGT 1 cut(s) 1149
HpyCH4V TGCA 5 cut(s) 4, 21, 182, 457, 686
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 114, 149, 158, 172, 226, 913
HpyF3I CTNAG 2 cut(s) 162, 788
HpySE526I ACGT 1 cut(s) 1149
Hsp92II CATG 5 cut(s) 16, 226, 247, 686, 777
HspAI GCGC 1 cut(s) 117
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
LmnI GCTCC 3 cut(s) 41, 592, 746
Lsp1109I GCAGC 1 cut(s) 575
LweI GCATC 4 cut(s) 13, 80, 611, 832
MaeI CTAG 2 cut(s) 572, 599
MaeII ACGT 1 cut(s) 1149
MalI GATC 7 cut(s) 85, 295, 450, 764, 867, 895, 1020
MboI GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
MboII GAAGA 3 cut(s) 259, 337, 1024
MflI RGATCY 6 cut(s) 83, 293, 762, 865, 893, 1018
MhlI GDGCHC 3 cut(s) 168, 589, 751
MlsI TGGCCA 1 cut(s) 1116
MluCI AATT 6 cut(s) 321, 488, 698, 809, 834, 1046
MluNI TGGCCA 1 cut(s) 1116
MlyI GAGTC 2 cut(s) 369, 764
MmeI TCCRAC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 1116
Mph1103I ATGCAT 2 cut(s) 6, 688
MroXI GAANNNNTTC 3 cut(s) 344, 492, 507
MscI TGGCCA 1 cut(s) 1116
MseI TTAA 2 cut(s) 383, 875
Msp20I TGGCCA 1 cut(s) 1116
MspI CCGG 1 cut(s) 1086
MspR9I CCNGG 3 cut(s) 100, 337, 1023
Mva1269I GAATGC 1 cut(s) 21
MvaI CCWGG 3 cut(s) 100, 337, 1023
MwoI GCNNNNNNNGC 7 cut(s) 27, 114, 149, 158, 172, 226, 913
NdeI CATATG 2 cut(s) 514, 607
NdeII GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
NlaIII CATG 5 cut(s) 16, 226, 247, 686, 777
NlaIV GGNNCC 6 cut(s) 37, 275, 435, 588, 990, 1020
NsiI ATGCAT 2 cut(s) 6, 688
PaeR7I CTCGAG 1 cut(s) 908
PagI TCATGA 1 cut(s) 222
PctI GAATGC 1 cut(s) 21
PdmI GAANNNNTTC 3 cut(s) 344, 492, 507
PfeI GAWTC 2 cut(s) 503, 1108
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 565
PleI GAGTC 2 cut(s) 368, 764
PpsI GAGTC 2 cut(s) 368, 764
PpuMI RGGWCCY 2 cut(s) 434, 676
Psp124BI GAGCTC 1 cut(s) 751
Psp1406I AACGTT 1 cut(s) 1149
Psp5II RGGWCCY 2 cut(s) 434, 676
Psp6I CCWGG 3 cut(s) 98, 335, 1021
PspGI CCWGG 3 cut(s) 98, 335, 1021
PspN4I GGNNCC 6 cut(s) 37, 275, 435, 588, 990, 1020
PspPI GGNCC 4 cut(s) 434, 676, 777, 989
PspPPI RGGWCCY 2 cut(s) 434, 676
PstNI CAGNNNCTG 1 cut(s) 1188
PsuI RGATCY 6 cut(s) 83, 293, 762, 865, 893, 1018
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 3 cut(s) 242, 275, 1135
RsaNI GTAC 3 cut(s) 241, 274, 1134
SacI GAGCTC 1 cut(s) 751
SaqAI TTAA 2 cut(s) 383, 875
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 7 cut(s) 83, 293, 448, 762, 865, 893, 1018
Sau96I GGNCC 4 cut(s) 434, 676, 777, 989
SchI GAGTC 2 cut(s) 369, 764
ScrFI CCNGG 3 cut(s) 100, 337, 1023
SduI GDGCHC 3 cut(s) 168, 589, 751
SfaNI GCATC 4 cut(s) 13, 80, 611, 832
SfcI CTRYAG 1 cut(s) 329
Sfr274I CTCGAG 1 cut(s) 908
SinI GGWCC 3 cut(s) 434, 676, 989
SlaI CTCGAG 1 cut(s) 908
SmlI CTYRAG 2 cut(s) 750, 908
SmoI CTYRAG 2 cut(s) 750, 908
Sse9I AATT 6 cut(s) 321, 488, 698, 809, 834, 1046
SsiI CCGC 2 cut(s) 891, 968
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 572, 599
SstI GAGCTC 1 cut(s) 751
StyD4I CCNGG 3 cut(s) 98, 335, 1021
TaaI ACNGT 2 cut(s) 958, 1075
TaiI ACGT 1 cut(s) 1152
TaqI TCGA 4 cut(s) 286, 710, 727, 909
TasI AATT 6 cut(s) 321, 488, 698, 809, 834, 1046
TfiI GAWTC 2 cut(s) 503, 1108
Tru1I TTAA 2 cut(s) 383, 875
Tru9I TTAA 2 cut(s) 383, 875
TscAI CASTG 2 cut(s) 573, 1080
TseI GCWGC 1 cut(s) 563
TspDTI ATGAA 5 cut(s) 260, 416, 615, 671, 1039
TspRI CASTG 2 cut(s) 573, 1080
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 3 cut(s) 434, 676, 989
XapI RAATTY 5 cut(s) 321, 488, 698, 809, 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 740
XhoI CTCGAG 1 cut(s) 908
XmnI GAANNNNTTC 3 cut(s) 344, 492, 507
XspI CTAG 2 cut(s) 572, 599
Zsp2I ATGCAT 2 cut(s) 6, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.