Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Forward (+)

19572787 .. 19575795

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25624.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGCTCTGTGAGAAGCATCCTTCTTTTCGAGAAAGATCCGAGAATGTGGACCTTGTAGTGGAGATTTCGCTGCAGCCATGGAAGGTTTTCCAGCCTGATGGAGTCATTTTGTTCTCAGACATTCTTACTCCGCTCTCTGGGATGAACATACCGTTTGACATTGTTAAAGGCAAGGGTCCGGTGATATTTAATCCTTTGAGTAGTGCTGAGCATGTTAATGAAGTGAGAGAGTTTGTTCCTCAAGAGTCAGTCCCGTATGTTGGGGAAGCATTGACAATCTTGCGAGAAGAGGTAGATAATAAGGCAGCGGTGTTAGGTTTTGTTGGTGCTCCTTTCACTTTAGCATCATATGTGGTCGAAGGTGGTTCATCAAAGCACTTCTCAAAAATAAAGAGATTAGCTTTCTCTCAACCCAAGGTCCTCCATGCATTACTTCAGAAATTTGCAACTTCAATGACAAAGTATATTCAATACCAAGCTGATAGTGGAGCTCAAGCAGTTCAGATATTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGTCTTCCATACTTGAAACAAATTGTGGATGAAGTGAAACGGACTCATCCAGATCTTCCTTTAATTCTTTATGCCAGTGGGTCTGGGGGTTTGCTTGAGAGGCTAGCTTTGACTGGCGTGGATGTAGTTAGCTTGGACTGGAGTGTTGACATGGCTGAAGGTAGAAAGCGACTGGGACCAAATGTAGCCGTTCAAGGTAATGTGGATCCTGGTGTTCTCTTCGGTTCAAAAGAATTCATCACCAGTAGAATACATGATACTGTGAGGAAAGCTGGTAGAGGGAAACATATTTTGAATCTTGGCCATGGAATTGTAGTAGGTACACCAGAGGAGAACGTTGCCCATTTCTTTGAAGTTGCGAAAGACATCAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

312

Amino Acids

34.34

Weight (kDa)

5.88

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	7 - 308	2.1e-106	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	2 cut(s)	134, 311
AclI	AACGTT	1 cut(s)	894
AclWI	GGATC	3 cut(s)	33, 758, 771
AcoI	YGGCCR	1 cut(s)	859
AcsI	RAATTY	3 cut(s)	443, 554, 791
AcuI	CTGAAG	2 cut(s)	422, 735
AfaI	GTAC	1 cut(s)	880
AfiI	CCNNNNNNNGG	3 cut(s)	61, 140, 263
AgsI	TTSAA	7 cut(s)	456, 473, 574, 752, 786, 853, 911
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	7 cut(s)	7, 404, 482, 494, 665, 690, 830
AluI	AGCT	7 cut(s)	7, 404, 482, 494, 665, 690, 830
Alw21I	GWGCWC	2 cut(s)	334, 496
AlwI	GGATC	3 cut(s)	33, 758, 771
AoxI	GGCC	2 cut(s)	522, 859
ApeKI	GCWGC	3 cut(s)	73, 76, 308
ApoI	RAATTY	3 cut(s)	443, 554, 791
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	5 cut(s)	52, 179, 421, 522, 734
AsuHPI	GGTGA	2 cut(s)	196, 790
AsuNHI	GCTAGC	1 cut(s)	661
AvaII	GGWCC	4 cut(s)	52, 179, 421, 734
BalI	TGGCCA	1 cut(s)	861
BamHI	GGATCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	334, 496
BbvI	GCAGC	3 cut(s)	60, 88, 320
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	768
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	3 cut(s)	74, 77, 309
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	75, 78, 310
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	4 cut(s)	52, 179, 421, 734
BmgT120I	GGNCC	5 cut(s)	52, 179, 421, 522, 734
BmiI	GGNNCC	3 cut(s)	180, 735, 765
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	28, 356
BmtI	GCTAGC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	718
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	3 cut(s)	228, 480, 674
BsaJI	CCNNGG	3 cut(s)	80, 417, 862
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 140, 263
Bse1I	ACTGG	5 cut(s)	633, 676, 701, 735, 801
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	80, 417, 862
BseGI	GGATG	5 cut(s)	19, 150, 592, 604, 685
BseLI	CCNNNNNNNGG	3 cut(s)	61, 140, 263
BseMII	CTCAG	3 cut(s)	132, 201, 547
BseNI	ACTGG	5 cut(s)	633, 676, 701, 735, 801
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	3 cut(s)	60, 88, 320
BshFI	GGCC	2 cut(s)	524, 861
BsiHKAI	GWGCWC	2 cut(s)	334, 496
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	2 cut(s)	239, 747
BslI	CCNNNNNNNGG	3 cut(s)	61, 140, 263
BsmFI	GGGAC	2 cut(s)	239, 747
BsnI	GGCC	2 cut(s)	524, 861
Bsp1286I	GDGCHC	2 cut(s)	334, 496
Bsp143I	GATC	3 cut(s)	38, 610, 763
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	2 cut(s)	80, 862
BspACI	CCGC	2 cut(s)	134, 311
BspANI	GGCC	2 cut(s)	524, 861
BspCNI	CTCAG	3 cut(s)	131, 202, 546
BspLI	GGNNCC	3 cut(s)	180, 735, 765
BspMAI	CTGCAG	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	665
BspPI	GGATC	3 cut(s)	33, 758, 771
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	5 cut(s)	633, 676, 701, 735, 801
BssECI	CCNNGG	3 cut(s)	80, 417, 862
BssMI	GATC	3 cut(s)	38, 610, 763
BssT1I	CCWWGG	3 cut(s)	80, 417, 862
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	156, 820
Bst6I	CTCTTC	2 cut(s)	285, 782
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	118, 210, 533
BstDSI	CCRYGG	2 cut(s)	80, 862
BstF5I	GGATG	5 cut(s)	19, 150, 592, 604, 685
BstKTI	GATC	3 cut(s)	41, 613, 766
BstMBI	GATC	3 cut(s)	38, 610, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	60, 88, 320
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	3 cut(s)	38, 610, 763
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	3 cut(s)	38, 610, 763
BsuRI	GGCC	2 cut(s)	524, 861
BtgI	CCRYGG	2 cut(s)	80, 862
BtsCI	GGATG	5 cut(s)	19, 150, 592, 604, 685
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	663
Cfr13I	GGNCC	5 cut(s)	52, 179, 421, 522, 734
Csp6I	GTAC	1 cut(s)	879
CviAII	CATG	7 cut(s)	81, 215, 428, 519, 709, 812, 863
CviQI	GTAC	1 cut(s)	879
DdeI	CTNAG	3 cut(s)	118, 210, 533
DpnI	GATC	3 cut(s)	40, 612, 765
DpnII	GATC	3 cut(s)	38, 610, 763
EaeI	YGGCCR	1 cut(s)	859
Eam1104I	CTCTTC	2 cut(s)	285, 782
EarI	CTCTTC	2 cut(s)	285, 782
Ecl136II	GAGCTC	1 cut(s)	494
Eco130I	CCWWGG	3 cut(s)	80, 417, 862
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	4 cut(s)	52, 179, 421, 734
Eco53kI	GAGCTC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	422, 735
EcoICRI	GAGCTC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	2 cut(s)	554, 791
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	80, 417, 862
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	3 cut(s)	80, 417, 862
FaeI	CATG	7 cut(s)	84, 218, 431, 522, 712, 815, 866
FaqI	GGGAC	2 cut(s)	239, 747
FatI	CATG	7 cut(s)	80, 214, 427, 518, 708, 811, 862
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	74, 77, 309
FokI	GGATG	5 cut(s)	6, 157, 591, 599, 692
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	3 cut(s)	74, 77, 309
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	3 cut(s)	74, 77, 309
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	2 cut(s)	524, 861
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	7 cut(s)	84, 218, 431, 522, 712, 815, 866
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	5 cut(s)	105, 248, 515, 601, 853
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	196, 790
Hpy166II	GTNNAC	3 cut(s)	52, 706, 881
Hpy188I	TCNGA	5 cut(s)	43, 121, 441, 507, 929
Hpy188III	TCNNGA	3 cut(s)	32, 245, 608
Hpy8I	GTNNAC	3 cut(s)	52, 706, 881
HpyAV	CCTTC	4 cut(s)	33, 79, 356, 710
HpyCH4III	ACNGT	2 cut(s)	156, 820
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	3 cut(s)	76, 431, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	118, 210, 533
HpySE526I	ACGT	1 cut(s)	894
Hsp92II	CATG	7 cut(s)	84, 218, 431, 522, 712, 815, 866
Kzo9I	GATC	3 cut(s)	38, 610, 763
LmnI	GCTCC	2 cut(s)	337, 491
Lsp1109I	GCAGC	3 cut(s)	60, 88, 320
LweI	GCATC	2 cut(s)	28, 356
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	894
MalI	GATC	3 cut(s)	40, 612, 765
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	38, 610, 763
MboII	GAAGA	4 cut(s)	302, 554, 605, 769
MflI	RGATCY	3 cut(s)	38, 610, 763
MhlI	GDGCHC	2 cut(s)	334, 496
MlsI	TGGCCA	1 cut(s)	861
MluCI	AATT	6 cut(s)	443, 554, 579, 621, 791, 867
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	4 cut(s)	114, 257, 509, 595
MnlI	CCTC	8 cut(s)	252, 286, 434, 544, 651, 816, 830, 880
Mox20I	TGGCCA	1 cut(s)	861
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	5 cut(s)	168, 192, 219, 620, 934
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	861
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	658
NcoI	CCATGG	2 cut(s)	80, 862
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	38, 610, 763
NheI	GCTAGC	1 cut(s)	661
NlaIII	CATG	7 cut(s)	84, 218, 431, 522, 712, 815, 866
NlaIV	GGNNCC	3 cut(s)	180, 735, 765
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	853
PkrI	GCNGC	3 cut(s)	75, 78, 310
PleI	GAGTC	4 cut(s)	113, 256, 509, 595
PpsI	GAGTC	4 cut(s)	113, 256, 509, 595
PpuMI	RGGWCCY	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	496
Psp1406I	AACGTT	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	3 cut(s)	180, 735, 765
PspPI	GGNCC	5 cut(s)	52, 179, 421, 522, 734
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	3 cut(s)	38, 610, 763
RsaI	GTAC	1 cut(s)	880
RsaNI	GTAC	1 cut(s)	879
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	168, 192, 219, 620, 934
SatI	GCNGC	3 cut(s)	74, 77, 309
Sau3AI	GATC	3 cut(s)	38, 610, 763
Sau96I	GGNCC	5 cut(s)	52, 179, 421, 522, 734
SchI	GAGTC	4 cut(s)	114, 257, 509, 595
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	334, 496
SfaNI	GCATC	2 cut(s)	28, 356
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	4 cut(s)	52, 179, 421, 734
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	3 cut(s)	243, 495, 653
SmoI	CTYRAG	3 cut(s)	243, 495, 653
Sse9I	AATT	6 cut(s)	443, 554, 579, 621, 791, 867
SsiI	CCGC	2 cut(s)	134, 311
SspMI	CTAG	1 cut(s)	662
SstI	GAGCTC	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	3 cut(s)	80, 417, 862
TaaI	ACNGT	2 cut(s)	156, 820
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	2 cut(s)	31, 360
TasI	AATT	6 cut(s)	443, 554, 579, 621, 791, 867
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	5 cut(s)	168, 192, 219, 620, 934
Tru9I	TTAA	5 cut(s)	168, 192, 219, 620, 934
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	3 cut(s)	73, 76, 308
TspDTI	ATGAA	6 cut(s)	17, 161, 237, 360, 603, 784
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	4 cut(s)	52, 179, 421, 734
XapI	RAATTY	3 cut(s)	443, 554, 791
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	662
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.