Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Forward (+)

17032412 .. 17034600

Gene Structure 2189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGGCTCATTTCTGCTTCCAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGGATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTGTGAACCTTTCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTTTCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCAAAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATTTAGGTCTGAGATTCGTGCAGTGAAATTAAGAAGGGATCGGATTGTTGTTGTTCTTGAACATAAGATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGCTAATCCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCCTGGTCTCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAATGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTGCAACTGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTTTGCAAGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAAATGTGCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAGGGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAAATTATTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGTCATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTATTATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAGAGATGGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

393

Amino Acids

43.83

Weight (kDa)

6.6

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	95 - 151	7.1e-09	PROPPIN

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
Acc65I	GGTACC	1 cut(s)	932
AccB1I	GGYRCC	1 cut(s)	932
AccB7I	CCANNNNNTGG	1 cut(s)	929
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	2 cut(s)	785, 1174
AclWI	GGATC	3 cut(s)	393, 444, 1106
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	5 cut(s)	303, 582, 661, 720, 934
AfiI	CCNNNNNNNGG	2 cut(s)	929, 1121
AjnI	CCWGG	2 cut(s)	40, 529
AluBI	AGCT	6 cut(s)	137, 202, 470, 872, 990, 1107
AluI	AGCT	6 cut(s)	137, 202, 470, 872, 990, 1107
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	3 cut(s)	393, 444, 1106
AlwNI	CAGNNNCTG	1 cut(s)	781
AoxI	GGCC	1 cut(s)	910
ApeKI	GCWGC	3 cut(s)	134, 1043, 1104
ApoI	RAATTY	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	932
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	1 cut(s)	756
AvaII	GGWCC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	932
BanII	GRGCYC	1 cut(s)	874
Bbv12I	GWGCWC	1 cut(s)	874
BbvI	GCAGC	3 cut(s)	146, 1055, 1116
BccI	CCATC	5 cut(s)	629, 692, 1079, 1126, 1159
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	42, 531
BciVI	GTATCC	1 cut(s)	297
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	477, 657
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	3 cut(s)	135, 1044, 1105
BlsI	GCNGC	3 cut(s)	136, 1045, 1106
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	3 cut(s)	42, 531, 942
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	934
BmrFI	CCNGG	3 cut(s)	42, 531, 942
BmsI	GCATC	2 cut(s)	222, 1091
BpuEI	CTTGAG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	942
BsaBI	GATNNNNATC	2 cut(s)	318, 680
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	25, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	929, 1121
Bse1I	ACTGG	2 cut(s)	258, 1146
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	318, 680
BseBI	CCWGG	2 cut(s)	42, 531
BseDI	CCNNGG	2 cut(s)	25, 529
BseGI	GGATG	4 cut(s)	319, 640, 703, 1090
BseJI	GATNNNNATC	2 cut(s)	318, 680
BseLI	CCNNNNNNNGG	2 cut(s)	929, 1121
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	296, 348
BseNI	ACTGG	2 cut(s)	258, 1146
BseRI	GAGGAG	3 cut(s)	558, 741, 1140
BseXI	GCAGC	3 cut(s)	146, 1055, 1116
BsgI	GTGCAG	2 cut(s)	387, 794
BshFI	GGCC	1 cut(s)	912
BshNI	GGYRCC	1 cut(s)	932
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	942
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	2 cut(s)	929, 1121
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	1 cut(s)	912
Bso31I	GGTCTC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	4 cut(s)	316, 385, 436, 1111
BspACI	CCGC	2 cut(s)	785, 1174
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	2 cut(s)	295, 349
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	934
BspPI	GGATC	3 cut(s)	393, 444, 1106
BspT107I	GGYRCC	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	258, 1146
BssECI	CCNNGG	2 cut(s)	25, 529
BssMI	GATC	4 cut(s)	316, 385, 436, 1111
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	42, 531
Bst4CI	ACNGT	6 cut(s)	13, 170, 212, 808, 1011, 1066
Bst6I	CTCTTC	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	526, 648, 783
BstDEI	CTNAG	4 cut(s)	282, 357, 440, 824
BstF5I	GGATG	4 cut(s)	319, 640, 703, 1090
BstKTI	GATC	4 cut(s)	319, 388, 439, 1114
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	4 cut(s)	316, 385, 436, 1111
BstNI	CCWGG	2 cut(s)	42, 531
BstSCI	CCNGG	3 cut(s)	40, 529, 940
BstV1I	GCAGC	3 cut(s)	146, 1055, 1116
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	912
BtsCI	GGATG	4 cut(s)	319, 640, 703, 1090
BtsI	GCAGTG	2 cut(s)	375, 782
BtsIMutI	CAGTG	3 cut(s)	375, 782, 858
Cac8I	GCNNGC	3 cut(s)	526, 648, 783
CaiI	CAGNNNCTG	1 cut(s)	781
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	5 cut(s)	302, 581, 660, 719, 933
CviAII	CATG	5 cut(s)	149, 577, 599, 1016, 1081
CviQI	GTAC	5 cut(s)	302, 581, 660, 719, 933
DdeI	CTNAG	4 cut(s)	282, 357, 440, 824
DpnI	GATC	4 cut(s)	318, 387, 438, 1113
DpnII	GATC	4 cut(s)	316, 385, 436, 1111
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	718
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	912
Eco24I	GRGCYC	1 cut(s)	874
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	40, 529
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	5 cut(s)	152, 580, 602, 1019, 1084
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	5 cut(s)	148, 576, 598, 1015, 1080
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	3 cut(s)	135, 1044, 1105
FokI	GGATG	4 cut(s)	326, 647, 710, 1097
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	3 cut(s)	135, 1044, 1105
FspBI	CTAG	2 cut(s)	477, 657
GluI	GCNGC	3 cut(s)	135, 1044, 1105
HaeIII	GGCC	1 cut(s)	912
HapII	CCGG	1 cut(s)	942
Hin1II	CATG	5 cut(s)	152, 580, 602, 1019, 1084
HincII	GTYRAC	2 cut(s)	733, 879
HindII	GTYRAC	2 cut(s)	733, 879
HpaII	CCGG	1 cut(s)	942
HphI	GGTGA	1 cut(s)	756
Hpy166II	GTNNAC	6 cut(s)	173, 272, 733, 811, 879, 1120
Hpy188I	TCNGA	8 cut(s)	67, 324, 358, 390, 456, 675, 994, 1024
Hpy188III	TCNNGA	4 cut(s)	59, 116, 404, 599
Hpy8I	GTNNAC	6 cut(s)	173, 272, 733, 811, 879, 1120
HpyAV	CCTTC	2 cut(s)	300, 375
HpyCH4III	ACNGT	6 cut(s)	13, 170, 212, 808, 1011, 1066
HpyCH4IV	ACGT	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	282, 357, 440, 824
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	152, 580, 602, 1019, 1084
KpnI	GGTACC	1 cut(s)	936
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	316, 385, 436, 1111
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	3 cut(s)	146, 1055, 1116
LweI	GCATC	2 cut(s)	222, 1091
MaeI	CTAG	2 cut(s)	477, 657
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	3 cut(s)	794, 1027, 1055
MalI	GATC	4 cut(s)	318, 387, 438, 1113
MboI	GATC	4 cut(s)	316, 385, 436, 1111
MboII	GAAGA	5 cut(s)	440, 676, 735, 1030, 1174
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	874
MluCI	AATT	6 cut(s)	306, 341, 374, 889, 898, 1034
MlyI	GAGTC	2 cut(s)	154, 738
MmeI	TCCRAC	2 cut(s)	89, 947
MnlI	CCTC	8 cut(s)	76, 473, 536, 709, 719, 838, 959, 1118
MseI	TTAA	3 cut(s)	219, 377, 573
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	942
MspR9I	CCNGG	3 cut(s)	42, 531, 942
MvaI	CCWGG	2 cut(s)	42, 531
NciI	CCSGG	1 cut(s)	942
NdeI	CATATG	1 cut(s)	1003
NdeII	GATC	4 cut(s)	316, 385, 436, 1111
NlaIII	CATG	5 cut(s)	152, 580, 602, 1019, 1084
NlaIV	GGNNCC	1 cut(s)	934
NmuCI	GTSAC	2 cut(s)	794, 1027
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	929
PkrI	GCNGC	3 cut(s)	136, 1045, 1106
PleI	GAGTC	2 cut(s)	153, 737
PpsI	GAGTC	2 cut(s)	153, 737
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	874
Psp6I	CCWGG	2 cut(s)	40, 529
PspGI	CCWGG	2 cut(s)	40, 529
PspN4I	GGNNCC	1 cut(s)	934
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	5 cut(s)	303, 582, 661, 720, 934
RsaNI	GTAC	5 cut(s)	302, 581, 660, 719, 933
SacI	GAGCTC	1 cut(s)	874
SalI	GTCGAC	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	219, 377, 573
SatI	GCNGC	3 cut(s)	135, 1044, 1105
Sau3AI	GATC	4 cut(s)	316, 385, 436, 1111
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	2 cut(s)	154, 738
ScrFI	CCNGG	3 cut(s)	42, 531, 942
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	2 cut(s)	222, 1091
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	6 cut(s)	306, 341, 374, 889, 898, 1034
SseBI	AGGCCT	1 cut(s)	912
SsiI	CCGC	2 cut(s)	785, 1174
SspMI	CTAG	2 cut(s)	477, 657
SstI	GAGCTC	1 cut(s)	874
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	3 cut(s)	40, 529, 940
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	6 cut(s)	13, 170, 212, 808, 1011, 1066
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	541, 732
TasI	AATT	6 cut(s)	306, 341, 374, 889, 898, 1034
TatI	WGTACW	2 cut(s)	301, 659
Tru1I	TTAA	3 cut(s)	219, 377, 573
Tru9I	TTAA	3 cut(s)	219, 377, 573
TscAI	CASTG	3 cut(s)	375, 782, 865
TseFI	GTSAC	2 cut(s)	794, 1027
TseI	GCWGC	3 cut(s)	134, 1043, 1104
Tsp45I	GTSAC	2 cut(s)	794, 1027
TspDTI	ATGAA	4 cut(s)	89, 440, 1004, 1175
TspGWI	ACGGA	2 cut(s)	230, 1137
TspRI	CASTG	3 cut(s)	375, 782, 865
Van91I	CCANNNNNTGG	1 cut(s)	929
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	2 cut(s)	477, 657
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.