Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Forward (+)

19905319 .. 19907370

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAGTTCAACAGTTTCGACACCACGAGGGATACTGTCACCCACAAGGCTTGGCTCGTACGGATCGCCTGATGCTGGGTCGTCTGTTTCTTTTACCCCGCTTGAACCGGACTTCAATGATGGTGACGAAACTGATTTGCACTCTGTGTCCTGGAATCAGGACTATGGTTGCTTTGCGGCAGGCACAAGTAATGGTTTTCGTATCTATAACTGTGAGCCTTTCAAGGAGACTTTTAGACGAGACTTGAAAAGTGGTGGGTTCAGAATTGTTGAGATGCTGTTCAGATGCAACATTCTCGTACTTGTTGGTGGTGTAGACAATTCCCAATATCCACCCAACAAAGTTATGATATGGGATGATCATCAGAGCCGATGTATTGGAGAGTTTTCATTCAGGTCTGAGATTCGTGCAGTAAAGTTAAGACGTGATCGCATAGTTGTGGTTCTTGAGCACAAGATATATATTTACAGCTTCAGGGATCTAAAGCTGCTGCATCAGATAGAAACTTTATCAAATCCCAGGGGATTGTGTTGCCTTTCACACCATCAAAATACATCTGTGCTGGCTTGCCCAGGCCTTCAACGGGGACAAGTTCGAATTGAACATTTTGGGCTGATTATGACAAAGATAATCAATGCTCATGATTCTCATATTGCATGCTTCACCTTAACAATGGATGGGCTGCTTCTTGCAACTTCTAGTACCAAGGGTACTTTGATAAGAATCTTCAACACGATGGATGGGACTCGCTTACAAGAGGTACGCAGAGGAGTGGACAGAGCAGACATCTATAGTATTGCTCTATCACCAAATGTTCAGTGGTTGGCAGTATCAAGCGACAAAGGTACTGTGCATATATTCAGCCTCAGAGTTAGAGGAGTTGGGATGAATTTATCTACTCATTCGAATGCTTCTCAAGGGCCAGCACTTTTTCAACAGAATTCTTCAAATTCCCTAGAGCCTCTTATATCTCCAAACACTGGAGCCAATTCTAGTTCATCATTGTCATTCATGAAAGGGGTTTTACCTAAATACTTCAGCTCAGAGTGGTCTTTTGCTCAGTTCCGCTTGCCAGAAGACACACAATTCATTACTGCATTTGGTTCTCAAAACACTCTTATCATTGTTGGCCTGGATGGGAGCTTCTACAGGTGCAGTTTCGATCCAGTGAATGGAGGTGAGATGTTGCAACAGGAATATGTACGGTTTCTCAAAATAGACAGTAGACCGGGGTTATCTTGTGGCAACACATCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

420

Amino Acids

46.58

Weight (kDa)

8.02

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	45 - 301	7.1e-12	THOC3 beta-propeller domain
PROPPIN	PF21032	47 - 290	4.7e-36	PROPPIN
WD40_CDC20-Fz	PF24807	142 - 304	3.7e-07	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	208 - 304	7.7e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	211 - 303	1.1e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	980, 1172
AccI	GTMKAC	2 cut(s)	315, 1225
AciI	CCGC	3 cut(s)	98, 176, 1066
AclWI	GGATC	3 cut(s)	70, 486, 1157
AcsI	RAATTY	3 cut(s)	889, 940, 949
AcuI	CTGAAG	2 cut(s)	457, 1021
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	7 cut(s)	59, 300, 703, 712, 762, 847, 1203
AfiI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	4 cut(s)	149, 518, 571, 1131
AluBI	AGCT	4 cut(s)	471, 487, 1041, 1143
AluI	AGCT	4 cut(s)	471, 487, 1041, 1143
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	221, 234
AlwI	GGATC	3 cut(s)	70, 486, 1157
AoxI	GGCC	3 cut(s)	574, 920, 1129
ApeKI	GCWGC	3 cut(s)	487, 490, 682
ApoI	RAATTY	3 cut(s)	889, 940, 949
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	1 cut(s)	1230
AsuHPI	GGTGA	5 cut(s)	30, 134, 655, 798, 1190
AsuII	TTCGAA	2 cut(s)	595, 905
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	1083
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	474, 477, 669
BccI	CCATC	6 cut(s)	113, 552, 671, 730, 734, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	4 cut(s)	151, 520, 573, 1133
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	1230
BcoDI	GTCTC	2 cut(s)	221, 234
BfaI	CTAG	3 cut(s)	699, 956, 993
BfmI	CTRYAG	2 cut(s)	790, 1147
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	4 cut(s)	177, 488, 491, 683
BlsI	GCNGC	4 cut(s)	178, 489, 492, 684
Bme1390I	CCNGG	5 cut(s)	151, 520, 573, 1133, 1230
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	985
BmrFI	CCNGG	5 cut(s)	151, 520, 573, 1133, 1230
BmsI	GCATC	4 cut(s)	61, 264, 275, 502
BpiI	GAAGAC	1 cut(s)	1083
BpmI	CTGGAG	1 cut(s)	1002
Bpu14I	TTCGAA	2 cut(s)	595, 905
BpuEI	CTTGAG	2 cut(s)	467, 900
BpuMI	CCSGG	1 cut(s)	1230
BsaBI	GATNNNNATC	2 cut(s)	360, 722
BsaJI	CCNNGG	5 cut(s)	518, 519, 571, 705, 1229
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
Bse1I	ACTGG	2 cut(s)	985, 1166
Bse8I	GATNNNNATC	2 cut(s)	360, 722
BseBI	CCWGG	4 cut(s)	151, 520, 573, 1133
BseDI	CCNNGG	5 cut(s)	518, 519, 571, 705, 1229
BseGI	GGATG	6 cut(s)	361, 682, 745, 891, 1141, 1250
BseJI	GATNNNNATC	2 cut(s)	360, 722
BseLI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
BseMII	CTCAG	4 cut(s)	390, 880, 1056, 1073
BseNI	ACTGG	2 cut(s)	985, 1166
BseRI	GAGGAG	2 cut(s)	783, 891
BseXI	GCAGC	3 cut(s)	474, 477, 669
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	429, 1174
BshFI	GGCC	3 cut(s)	576, 922, 1131
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	107, 1229
BsiWI	CGTACG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	600, 757
BslI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
BsmAI	GTCTC	2 cut(s)	221, 234
BsmFI	GGGAC	2 cut(s)	600, 757
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	3 cut(s)	576, 922, 1131
Bsp119I	TTCGAA	2 cut(s)	595, 905
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	5 cut(s)	62, 358, 427, 478, 1162
BspACI	CCGC	3 cut(s)	98, 176, 1066
BspANI	GGCC	3 cut(s)	576, 922, 1131
BspCNI	CTCAG	4 cut(s)	391, 879, 1055, 1072
BspHI	TCATGA	2 cut(s)	640, 1011
BspLI	GGNNCC	1 cut(s)	985
BspPI	GGATC	3 cut(s)	70, 486, 1157
BspT104I	TTCGAA	2 cut(s)	595, 905
BsrI	ACTGG	2 cut(s)	985, 1166
BssECI	CCNNGG	5 cut(s)	518, 519, 571, 705, 1229
BssMI	GATC	5 cut(s)	62, 358, 427, 478, 1162
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	4 cut(s)	151, 520, 573, 1133
Bst4CI	ACNGT	6 cut(s)	13, 36, 212, 850, 1206, 1223
BstBI	TTCGAA	2 cut(s)	595, 905
BstC8I	GCNNGC	6 cut(s)	181, 564, 568, 658, 924, 1070
BstDEI	CTNAG	4 cut(s)	399, 866, 1042, 1059
BstF5I	GGATG	6 cut(s)	361, 682, 745, 891, 1141, 1250
BstKTI	GATC	5 cut(s)	65, 361, 430, 481, 1165
BstMAI	GTCTC	2 cut(s)	221, 234
BstMBI	GATC	5 cut(s)	62, 358, 427, 478, 1162
BstNI	CCWGG	4 cut(s)	151, 520, 573, 1133
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	5 cut(s)	149, 518, 571, 1131, 1228
BstSFI	CTRYAG	2 cut(s)	790, 1147
BstV1I	GCAGC	3 cut(s)	474, 477, 669
BstV2I	GAAGAC	1 cut(s)	1083
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	576, 922, 1131
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	6 cut(s)	361, 682, 745, 891, 1141, 1250
BtsIMutI	CAGTG	3 cut(s)	824, 978, 1173
Cac8I	GCNNGC	6 cut(s)	181, 564, 568, 658, 924, 1070
CciI	TCATGA	2 cut(s)	640, 1011
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	3 cut(s)	641, 657, 1012
CviQI	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
DdeI	CTNAG	4 cut(s)	399, 866, 1042, 1059
DpnI	GATC	5 cut(s)	64, 360, 429, 480, 1164
DpnII	GATC	5 cut(s)	62, 358, 427, 478, 1162
DraIII	CACNNNGTG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	457, 1021
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	4 cut(s)	149, 518, 571, 1131
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	644, 660, 1015
FaqI	GGGAC	2 cut(s)	600, 757
FatI	CATG	3 cut(s)	640, 656, 1011
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	2 cut(s)	315, 1225
Fnu4HI	GCNGC	4 cut(s)	177, 488, 491, 683
FokI	GGATG	6 cut(s)	368, 689, 752, 898, 1148, 1237
Fsp4HI	GCNGC	4 cut(s)	177, 488, 491, 683
FspBI	CTAG	3 cut(s)	699, 956, 993
GluI	GCNGC	4 cut(s)	177, 488, 491, 683
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	3 cut(s)	576, 922, 1131
HapII	CCGG	2 cut(s)	107, 1229
Hin1II	CATG	3 cut(s)	644, 660, 1015
HinfI	GANTC	5 cut(s)	154, 403, 644, 723, 745
HpaII	CCGG	2 cut(s)	107, 1229
HphI	GGTGA	5 cut(s)	30, 134, 655, 798, 1190
Hpy166II	GTNNAC	3 cut(s)	316, 775, 1226
Hpy188I	TCNGA	8 cut(s)	263, 284, 366, 400, 498, 869, 1045, 1259
Hpy188III	TCNNGA	4 cut(s)	158, 446, 641, 1012
Hpy8I	GTNNAC	3 cut(s)	316, 775, 1226
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	6 cut(s)	13, 36, 212, 850, 1206, 1223
HpyCH4IV	ACGT	1 cut(s)	424
HpyF3I	CTNAG	4 cut(s)	399, 866, 1042, 1059
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	644, 660, 1015
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	62, 358, 427, 478, 1162
LmnI	GCTCC	2 cut(s)	983, 1140
Lsp1109I	GCAGC	3 cut(s)	474, 477, 669
LweI	GCATC	4 cut(s)	61, 264, 275, 502
MaeI	CTAG	3 cut(s)	699, 956, 993
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	36, 122
MalI	GATC	5 cut(s)	64, 360, 429, 480, 1164
MboI	GATC	5 cut(s)	62, 358, 427, 478, 1162
MboII	GAAGA	3 cut(s)	718, 936, 1088
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	8 cut(s)	264, 319, 597, 889, 940, 949, 988, 1085
MlyI	GAGTC	1 cut(s)	739
MnlI	CCTC	7 cut(s)	20, 751, 761, 869, 875, 972, 1169
MseI	TTAA	2 cut(s)	419, 668
MslI	CAYNNNNRTG	2 cut(s)	437, 906
MspI	CCGG	2 cut(s)	107, 1229
MspR9I	CCNGG	5 cut(s)	151, 520, 573, 1133, 1230
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	4 cut(s)	151, 520, 573, 1133
NciI	CCSGG	1 cut(s)	1230
NdeII	GATC	5 cut(s)	62, 358, 427, 478, 1162
NlaIII	CATG	3 cut(s)	644, 660, 1015
NlaIV	GGNNCC	1 cut(s)	985
NmuCI	GTSAC	2 cut(s)	36, 122
NspI	RCATGY	1 cut(s)	660
NspV	TTCGAA	2 cut(s)	595, 905
PaeI	GCATGC	1 cut(s)	660
PagI	TCATGA	2 cut(s)	640, 1011
PasI	CCCWGGG	1 cut(s)	519
PceI	AGGCCT	1 cut(s)	576
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	4 cut(s)	154, 403, 644, 723
Pfl23II	CGTACG	1 cut(s)	57
PflMI	CCANNNNNTGG	2 cut(s)	980, 1172
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	178, 489, 492, 684
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp6I	CCWGG	4 cut(s)	149, 518, 571, 1131
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	149, 518, 571, 1131
PspLI	CGTACG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	985
PspPI	GGNCC	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	7 cut(s)	59, 300, 703, 712, 762, 847, 1203
RsaNI	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
RseI	CAYNNNNRTG	2 cut(s)	437, 906
SaqAI	TTAA	2 cut(s)	419, 668
SatI	GCNGC	4 cut(s)	177, 488, 491, 683
Sau3AI	GATC	5 cut(s)	62, 358, 427, 478, 1162
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	5 cut(s)	151, 520, 573, 1133, 1230
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	4 cut(s)	61, 264, 275, 502
SfcI	CTRYAG	2 cut(s)	790, 1147
SfuI	TTCGAA	2 cut(s)	595, 905
SmiMI	CAYNNNNRTG	2 cut(s)	437, 906
SmlI	CTYRAG	2 cut(s)	446, 915
SmoI	CTYRAG	2 cut(s)	446, 915
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	8 cut(s)	264, 319, 597, 889, 940, 949, 988, 1085
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	98, 176, 1066
SspMI	CTAG	3 cut(s)	699, 956, 993
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	5 cut(s)	149, 518, 571, 1131, 1228
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	6 cut(s)	13, 36, 212, 850, 1206, 1223
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	4 cut(s)	17, 595, 905, 1161
TasI	AATT	8 cut(s)	264, 319, 597, 889, 940, 949, 988, 1085
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	154, 403, 644, 723
Tru1I	TTAA	2 cut(s)	419, 668
Tru9I	TTAA	2 cut(s)	419, 668
TscAI	CASTG	3 cut(s)	824, 985, 1173
TseFI	GTSAC	2 cut(s)	36, 122
TseI	GCWGC	3 cut(s)	487, 490, 682
Tsp45I	GTSAC	2 cut(s)	36, 122
TspDTI	ATGAA	6 cut(s)	378, 902, 987, 1000, 1028, 1078
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	3 cut(s)	824, 985, 1173
Van91I	CCANNNNNTGG	2 cut(s)	980, 1172
XapI	RAATTY	3 cut(s)	889, 940, 949
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XmiI	GTMKAC	2 cut(s)	315, 1225
XspI	CTAG	3 cut(s)	699, 956, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.