Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Forward (+)

23136259 .. 23136639

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTTCAACAGTGTCAACATCTCGAGGAATGCATTCACCCGCAAGGCTTGGCATGCATGAATCACCGGATTCTGGGGCTTCTGGTTCTTTCAGCCCGCTCGAACCAGATGTCAATGACAATGAAACGGAGTTGCTCTCTGTTTCTTGGAATCAGGACTACGGTTGCTTTTCTGCAGGGACAAGCAATGGTTTTCGAATCTACAACTGCGAGCCTTTCAAAGAAACTTTTAGACGTGATTTGAAAAGTGGGGGATTCAAAATTGTGGAGATGCTATTCCGATGCAACATTCTTGTACTTGTTGGTAGCGGGGACAATTCACAATATCCGCCTAACAAGGTTATGATTTGGGATGATCGATCAGAGTCGATGTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

4.89

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	4 cut(s)	42, 98, 309, 329
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	9, 220, 244, 259
AjiI	CACGTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp700I	GAANNNNTTC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	30, 57
AsuII	TTCGAA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	236
BmsI	GCATC	2 cut(s)	261, 272
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu14I	TTCGAA	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	193
BseCI	ATCGAT	1 cut(s)	358
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	193, 326
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	193, 326
BsmI	GAATGC	2 cut(s)	34, 36
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	355, 359
BspACI	CCGC	4 cut(s)	42, 98, 309, 329
BspDI	ATCGAT	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	193
BssMI	GATC	2 cut(s)	355, 359
Bst4CI	ACNGT	2 cut(s)	13, 164
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	56, 98, 212
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	358, 362
BstMBI	GATC	2 cut(s)	355, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	358
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	56, 98, 212
ClaI	ATCGAT	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	2 cut(s)	55, 59
CviJI	RGCY	4 cut(s)	49, 80, 96, 214
CviKI_1	RGCY	4 cut(s)	49, 80, 96, 214
CviQI	GTAC	1 cut(s)	296
DpnI	GATC	2 cut(s)	357, 361
DpnII	GATC	2 cut(s)	355, 359
EciI	GGCGGA	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	24
EcoT22I	ATGCAT	2 cut(s)	36, 60
FaeI	CATG	2 cut(s)	58, 62
FaiI	YATR	3 cut(s)	56, 60, 344
FaqI	GGGAC	2 cut(s)	193, 326
FatI	CATG	2 cut(s)	54, 58
FauI	CCCGC	3 cut(s)	49, 105, 302
FokI	GGATG	1 cut(s)	365
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	2 cut(s)	58, 62
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	6 cut(s)	62, 71, 151, 198, 255, 365
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	30, 57
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	281, 364
Hpy188III	TCNNGA	2 cut(s)	24, 155
Hpy8I	GTNNAC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	13, 164
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	34, 58, 176, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	58, 62
Kzo9I	GATC	2 cut(s)	355, 359
LpnPI	CCDG	6 cut(s)	60, 69, 81, 120, 140, 162
LweI	GCATC	2 cut(s)	261, 272
MaeII	ACGT	1 cut(s)	235
MalI	GATC	2 cut(s)	357, 361
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	2 cut(s)	355, 359
MluCI	AATT	2 cut(s)	261, 316
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	1 cut(s)	20
Mph1103I	ATGCAT	2 cut(s)	36, 60
MroXI	GAANNNNTTC	1 cut(s)	34
MspI	CCGG	1 cut(s)	68
Mva1269I	GAATGC	2 cut(s)	34, 36
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	355, 359
NlaIII	CATG	2 cut(s)	58, 62
NsiI	ATGCAT	2 cut(s)	36, 60
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	24
PctI	GAATGC	2 cut(s)	34, 36
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	5 cut(s)	62, 71, 151, 198, 255
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
Sau3AI	GATC	2 cut(s)	355, 359
SchI	GAGTC	1 cut(s)	374
SetI	ASST	2 cut(s)	238, 342
SfaNI	GCATC	2 cut(s)	261, 272
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	261, 316
SsiI	CCGC	4 cut(s)	42, 98, 309, 329
TaaI	ACNGT	2 cut(s)	13, 164
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	5 cut(s)	25, 102, 196, 358, 368
TasI	AATT	2 cut(s)	261, 316
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	5 cut(s)	62, 71, 151, 198, 255
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	75, 138
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	18
XceI	RCATGY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	34
Zsp2I	ATGCAT	2 cut(s)	36, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.