pycom01g18370

Autophagy-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
17390442 .. 17392264
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18370.1

Sequence Viewer

Length: 1179 bp
ATGAGTTCAACAGTGTCAACATCTCGAGGAATACATTCACCCGCAAGGCTTGCCAGGCATGAATCACCGGATTCTGGGGCTTCTGGTTCTTTTAGCCTGCTTGAACCAGACATTAATGACAGTGAAACGGAGTTGCTCTCTGTGTTTTGGAATCAAGACAACGGTTGCTTCTCTGCAGGCACAAGCAATGGATTTCGCATCTACAACTGCGAGCCTTTCAAAGAAACTTTTAGACGTGATTTGAAAAGTGGGGGATTCAAAATTGTGGAGATGCTATTCCGATGCAACATTCTTGTACTTGTTGGTAGCTGGGACAATTCGCAATATCCGCCTCACAAGGTTATGATTTGGGATGATCATCAGAGCCGATGTATTGGTGAATTTTCATTCAGGTCTGAGGTTCGTGCAGTAAAGTTAAAGCGCGATCGCATAGTAGTTGTTCTTGAGCACAAGATATATGCTTATAACTTTATGGATCTGAAGCTGCTGCATCAGATTGAGACTGTAGCAAATCCTAGGGGATTGTGCTGCCTTTCACACCATCCAAATACATCTGTGCTGGCTTGCCCAGGCCTTCAACGAGGACAAGTTCGAATTGAACATTTTGGGCTGAACGTGACGAAGTTAATCAATGCTCATGATTCTCATATTGCATGCTTCACCCTGACAATGGACGGGCTGCTTCTTGCAACTGCTAGTAATAAGGGTACTTTGATAAGAATATTCAACACAATGGATGGGACTCATTTACAAGAGGTACGCAGAGGAGTGGATAGAGCCGAAATTTACAGTATTGCTCTCTCTCCAAATGTCCAGTGGTTGGCAGCATCGAGTGACAAAGGTACTGTGCATATATTCAGCCTCAGAGTTAGAGTACTTGGGGAGGATTTATCTGCTCATAATTCTGCTCAAGGGCCAGCAATGTTTCAGCAGAACTCTTCAAATTCCCTGGATCCTTTTATTTCTCCAGACACCGGTGCCAATTCTAGTTCGTCATTGTCTTTCATGAGAGGGGTTTTACCAAAATATTTTAGCTCCGAATGGTCATTTGCTCAGTTCCACTTGCCAGAAGACACTCAATTCATTACTGCATTTGGTTCTCAGAACAGTGTCATCATTGTTGGCATGGATGGGAGTTTCTACAAATGCAGTTTTGATCGATCCAGTGAATGGAGGTGA

Protein Analysis

393

Amino Acids

43.77

Weight (kDa)

6.73

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 45 - 289 9.2e-13 THOC3 beta-propeller domain
PROPPIN PF21032 49 - 289 5.1e-36 PROPPIN
WD40_CDC20-Fz PF24807 141 - 303 1.9e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 151 - 302 1.1e-06 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 210 - 304 2.3e-08 WDR5 beta-propeller domain
WD40_Prp19 PF24814 212 - 304 2.8e-08 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 977
AccB7I CCANNNNNTGG 2 cut(s) 820, 1170
AccII CGCG 1 cut(s) 423
AciI CCGC 2 cut(s) 42, 329
AclWI GGATC 4 cut(s) 483, 947, 960, 1155
AcsI RAATTY 3 cut(s) 380, 783, 943
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 5 cut(s) 297, 709, 759, 844, 876
AfiI CCNNNNNNNGG 5 cut(s) 74, 670, 820, 974, 1170
AgeI ACCGGT 1 cut(s) 974
AgsI TTSAA 9 cut(s) 9, 104, 220, 244, 259, 578, 599, 727, 942
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 3 cut(s) 53, 568, 948
AluBI AGCT 3 cut(s) 309, 484, 1035
AluI AGCT 3 cut(s) 309, 484, 1035
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 4 cut(s) 483, 947, 960, 1155
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 571, 914
ApeKI GCWGC 5 cut(s) 484, 487, 528, 679, 824
ApoI RAATTY 3 cut(s) 380, 783, 943
AseI ATTAAT 1 cut(s) 114
AsiGI ACCGGT 1 cut(s) 974
AsiSI GCGATCGC 1 cut(s) 427
Asp700I GAANNNNTTC 1 cut(s) 34
AspA2I CCTAGG 1 cut(s) 515
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 914
AsuHPI GGTGA 4 cut(s) 30, 57, 389, 652
AsuII TTCGAA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 515
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 1 cut(s) 977
BbsI GAAGAC 1 cut(s) 1077
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 5 cut(s) 471, 474, 515, 666, 836
BccI CCATC 3 cut(s) 549, 731, 1124
BciT130I CCWGG 3 cut(s) 55, 570, 950
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 516, 696, 987
BfmI CTRYAG 2 cut(s) 174, 504
BisI GCNGC 5 cut(s) 485, 488, 529, 680, 825
BlnI CCTAGG 1 cut(s) 515
BlsI GCNGC 5 cut(s) 486, 489, 530, 681, 826
BmcAI AGTACT 1 cut(s) 876
Bme1390I CCNGG 3 cut(s) 55, 570, 950
BmeT110I CYCGRG 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 914
BmiI GGNNCC 2 cut(s) 954, 979
BmrFI CCNGG 3 cut(s) 55, 570, 950
BmsI GCATC 5 cut(s) 207, 261, 272, 499, 836
BpiI GAAGAC 1 cut(s) 1077
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 951
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 2 cut(s) 464, 894
Bsa29I ATCGAT 1 cut(s) 1159
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 515, 568, 948
BsaWI WCCGGW 2 cut(s) 67, 974
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 670, 820, 974, 1170
Bse118I RCCGGY 1 cut(s) 974
Bse1I ACTGG 2 cut(s) 814, 1164
Bse3DI GCAATG 2 cut(s) 193, 927
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 3 cut(s) 55, 570, 950
BseCI ATCGAT 1 cut(s) 1159
BseDI CCNNGG 3 cut(s) 515, 568, 948
BseGI GGATG 4 cut(s) 358, 541, 742, 1135
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 5 cut(s) 74, 670, 820, 974, 1170
BseMI GCAATG 2 cut(s) 193, 927
BseMII CTCAG 4 cut(s) 387, 877, 1067, 1115
BseNI ACTGG 2 cut(s) 814, 1164
BseRI GAGGAG 1 cut(s) 780
BseXI GCAGC 5 cut(s) 471, 474, 515, 666, 836
BseYI CCCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 2 cut(s) 573, 916
BshNI GGYRCC 1 cut(s) 977
BshTI ACCGGT 1 cut(s) 974
BshVI ATCGAT 1 cut(s) 1159
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 68, 975
BslFI GGGAC 2 cut(s) 326, 754
BslI CCNNNNNNNGG 5 cut(s) 74, 670, 820, 974, 1170
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 326, 754
BsnI GGCC 2 cut(s) 573, 916
BsoBI CYCGRG 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
BspACI CCGC 2 cut(s) 42, 329
BspANI GGCC 2 cut(s) 573, 916
BspCNI CTCAG 4 cut(s) 388, 876, 1066, 1114
BspDI ATCGAT 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 423
BspHI TCATGA 2 cut(s) 637, 1005
BspLI GGNNCC 2 cut(s) 954, 979
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 4 cut(s) 483, 947, 960, 1155
BspT104I TTCGAA 1 cut(s) 592
BspT107I GGYRCC 1 cut(s) 977
BsrDI GCAATG 2 cut(s) 193, 927
BsrFI RCCGGY 1 cut(s) 974
BsrI ACTGG 2 cut(s) 814, 1164
BssAI RCCGGY 1 cut(s) 974
BssECI CCNNGG 3 cut(s) 515, 568, 948
BssMI GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
BssT1I CCWWGG 1 cut(s) 515
Bst2UI CCWGG 3 cut(s) 55, 570, 950
Bst4CI ACNGT 7 cut(s) 13, 122, 164, 505, 791, 847, 1109
Bst6I CTCTTC 1 cut(s) 943
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 8 cut(s) 51, 98, 178, 212, 561, 565, 655, 918
BstDEI CTNAG 4 cut(s) 396, 863, 1053, 1101
BstF5I GGATG 4 cut(s) 358, 541, 742, 1135
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 6 cut(s) 358, 427, 478, 955, 1159, 1163
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 3 cut(s) 50, 55, 328
BstNI CCWGG 3 cut(s) 55, 570, 950
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 3 cut(s) 53, 568, 948
BstSFI CTRYAG 2 cut(s) 174, 504
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 5 cut(s) 471, 474, 515, 666, 836
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 2 cut(s) 475, 952
BstYI RGATCY 2 cut(s) 475, 952
Bsu15I ATCGAT 1 cut(s) 1159
BsuRI GGCC 2 cut(s) 573, 916
BsuTUI ATCGAT 1 cut(s) 1159
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 4 cut(s) 358, 541, 742, 1135
BtsIMutI CAGTG 5 cut(s) 18, 127, 821, 1114, 1171
Cac8I GCNNGC 8 cut(s) 51, 98, 178, 212, 561, 565, 655, 918
CciI TCATGA 2 cut(s) 637, 1005
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 914
ClaI ATCGAT 1 cut(s) 1159
Csp6I GTAC 5 cut(s) 296, 708, 758, 843, 875
CspAI ACCGGT 1 cut(s) 974
CviAII CATG 5 cut(s) 59, 638, 654, 1006, 1126
CviQI GTAC 5 cut(s) 296, 708, 758, 843, 875
DdeI CTNAG 4 cut(s) 396, 863, 1053, 1101
DpnI GATC 6 cut(s) 357, 426, 477, 954, 1158, 1162
DpnII GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
Eam1104I CTCTTC 1 cut(s) 943
EarI CTCTTC 1 cut(s) 943
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 515
Eco147I AGGCCT 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 53, 568, 948
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 5 cut(s) 62, 641, 657, 1009, 1129
FaqI GGGAC 2 cut(s) 326, 754
FatI CATG 5 cut(s) 58, 637, 653, 1005, 1125
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 5 cut(s) 485, 488, 529, 680, 825
FokI GGATG 4 cut(s) 365, 528, 749, 1142
Fsp4HI GCNGC 5 cut(s) 485, 488, 529, 680, 825
FspBI CTAG 3 cut(s) 516, 696, 987
GlaI GCGC 1 cut(s) 422
GluI GCNGC 5 cut(s) 485, 488, 529, 680, 825
GsaI CCCAGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 2 cut(s) 573, 916
HapII CCGG 2 cut(s) 68, 975
HhaI GCGC 1 cut(s) 423
Hin1II CATG 5 cut(s) 62, 641, 657, 1009, 1129
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 6 cut(s) 62, 71, 151, 255, 641, 742
HpaII CCGG 2 cut(s) 68, 975
HphI GGTGA 4 cut(s) 30, 57, 389, 652
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 8 cut(s) 281, 363, 397, 480, 495, 866, 1039, 1104
Hpy188III TCNNGA 6 cut(s) 24, 155, 443, 638, 968, 1006
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 7 cut(s) 13, 122, 164, 505, 791, 847, 1109
HpyCH4IV ACGT 2 cut(s) 235, 615
HpyCH4V TGCA 9 cut(s) 176, 285, 407, 490, 653, 689, 850, 1091, 1149
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 55, 328
HpyF3I CTNAG 4 cut(s) 396, 863, 1053, 1101
HpySE526I ACGT 2 cut(s) 235, 615
Hsp92II CATG 5 cut(s) 62, 641, 657, 1009, 1129
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
LmnI GCTCC 1 cut(s) 1040
Lsp1109I GCAGC 5 cut(s) 471, 474, 515, 666, 836
LweI GCATC 5 cut(s) 207, 261, 272, 499, 836
MaeI CTAG 3 cut(s) 516, 696, 987
MaeII ACGT 2 cut(s) 235, 615
MaeIII GTNAC 2 cut(s) 616, 833
MalI GATC 6 cut(s) 357, 426, 477, 954, 1158, 1162
MboI GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
MboII GAAGA 2 cut(s) 930, 1082
MflI RGATCY 2 cut(s) 475, 952
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 9 cut(s) 261, 316, 380, 594, 783, 901, 943, 982, 1079
MlyI GAGTC 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 3 cut(s) 114, 416, 626
MspI CCGG 2 cut(s) 68, 975
MspR9I CCNGG 3 cut(s) 55, 570, 950
MvaI CCWGG 3 cut(s) 55, 570, 950
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 50, 55, 328
NdeII GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
NlaIII CATG 5 cut(s) 62, 641, 657, 1009, 1129
NlaIV GGNNCC 2 cut(s) 954, 979
NmuCI GTSAC 2 cut(s) 616, 833
NspI RCATGY 1 cut(s) 657
NspV TTCGAA 1 cut(s) 592
PaeI GCATGC 1 cut(s) 657
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 2 cut(s) 637, 1005
PceI AGGCCT 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 5 cut(s) 62, 71, 151, 255, 641
PflMI CCANNNNNTGG 2 cut(s) 820, 1170
PinAI ACCGGT 1 cut(s) 974
PkrI GCNGC 5 cut(s) 486, 489, 530, 681, 826
Ple19I CGATCG 1 cut(s) 427
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PshBI ATTAAT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 53, 568, 948
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 3 cut(s) 53, 568, 948
PspN4I GGNNCC 2 cut(s) 954, 979
PspPI GGNCC 1 cut(s) 914
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 475, 952
PvuI CGATCG 1 cut(s) 427
RgaI GCGATCGC 1 cut(s) 427
RsaI GTAC 5 cut(s) 297, 709, 759, 844, 876
RsaNI GTAC 5 cut(s) 296, 708, 758, 843, 875
SaqAI TTAA 3 cut(s) 114, 416, 626
SatI GCNGC 5 cut(s) 485, 488, 529, 680, 825
Sau3AI GATC 6 cut(s) 355, 424, 475, 952, 1156, 1160
Sau96I GGNCC 1 cut(s) 914
ScaI AGTACT 1 cut(s) 876
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 3 cut(s) 55, 570, 950
SduI GDGCHC 1 cut(s) 450
SfaAI GCGATCGC 1 cut(s) 427
SfaNI GCATC 5 cut(s) 207, 261, 272, 499, 836
SfcI CTRYAG 2 cut(s) 174, 504
Sfr274I CTCGAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 592
SgfI GCGATCGC 1 cut(s) 427
SgrAI CRCCGGYG 1 cut(s) 974
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 3 cut(s) 24, 443, 909
SmoI CTYRAG 3 cut(s) 24, 443, 909
SphI GCATGC 1 cut(s) 657
Sse9I AATT 9 cut(s) 261, 316, 380, 594, 783, 901, 943, 982, 1079
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 2 cut(s) 42, 329
SspI AATATT 2 cut(s) 723, 1028
SspMI CTAG 3 cut(s) 516, 696, 987
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 3 cut(s) 53, 568, 948
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 7 cut(s) 13, 122, 164, 505, 791, 847, 1109
TaiI ACGT 2 cut(s) 238, 618
TaqI TCGA 4 cut(s) 25, 592, 830, 1159
TasI AATT 9 cut(s) 261, 316, 380, 594, 783, 901, 943, 982, 1079
TatI WGTACW 2 cut(s) 295, 874
TfiI GAWTC 5 cut(s) 62, 71, 151, 255, 641
Tru1I TTAA 3 cut(s) 114, 416, 626
Tru9I TTAA 3 cut(s) 114, 416, 626
TscAI CASTG 5 cut(s) 18, 127, 821, 1114, 1171
TseFI GTSAC 2 cut(s) 616, 833
TseI GCWGC 5 cut(s) 484, 487, 528, 679, 824
Tsp45I GTSAC 2 cut(s) 616, 833
TspDTI ATGAA 4 cut(s) 75, 375, 994, 1072
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 5 cut(s) 18, 127, 821, 1114, 1171
Van91I CCANNNNNTGG 2 cut(s) 820, 1170
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 3 cut(s) 380, 783, 943
XceI RCATGY 1 cut(s) 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 813
XhoI CTCGAG 1 cut(s) 24
XmaJI CCTAGG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 3 cut(s) 516, 696, 987
ZrmI AGTACT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.