Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Forward (+)

27315822 .. 27319309

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G267100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAGTTCAACAGTTTCAACATCTCGAGGAATACATTCGCCCGCAAGGCTTGGCACATATGAATCGCCAGATGCTGGGGCGTCTGGCTCTTTTAGCCAGCTTGAACCAGACATCAATGACGGTGAAACAGAGTTACTCTCTGTATCCTGGAATCAGGACTATGGTTGCTTTTCTGCAGGCACAAGCAACGGTTTTCGTATCTTTAACTGCGAGCCTTTCAAGGAAACTTTTAGACGTGATTTGAAAAGTGGGGGATTCAAAATTGTGGAGATGCTGTTTCGATGCAACATTCTCGTACTTGTTGGAAGTGGAGACAATTCCCAATATCCACCTAACAAGGTTATGATTTGGGATGATCATCAGAGCCGATGTATTGGTGAATTTTCATTCAGGTCTGAGGTTCGTTCAGTAAGATTAAGGCGTGATCGCATAGTTGTTGTTCTTGAGCACAAGATATACGTTTACAACTTTATGGATCTGAAGCTGCTGCATCAGATTGAGACTGTAGCAAATCCTAGAGGATTGTGCTGCCTTTCACATCATCCAAATACATCTGTGCTGGCTTGCCCAGGCCTTCAACGAGGACAAGTTCGGATTGAACATTTTGGACTGAACATGACAAAGTTAATAAATGCTCATGATTCTCATATTGCATGCTTCACGTTAACAATGGATGGACTGCTTCTTGCTACTGCTAGTACAAAGGGTACTTTGATAAGAATCTTCAACACAATGGATGGGACTCGCTTACAAGAGGTACGCAGAGGAGTGGACAGAGCAGAAATTTACAGTATTGCTCTCTCTCCGAACGTCCAGTGGTTGGCAGCATCGAGTGACAAAGGTACTGTCCATATATTCAGCCTCAGAGTTAGAGTATTTGGGGAGGATTTGTCTGCCCATTCAAATTCTGCTCAAGGGCCAGCAATGTTTCAGCAGAATTCGTCAAATGCCCTAGATCCTCTTATTTCTCAAAACACTGGTGCTAATTCTAGTTCATCACTGGCTTTCATGAGAGGGGTTTTACCTAAATATTTTAGCTCAGAATGGTCATTTGCTCAGTTCCACTTGCCAGAAGACACTCAATTCATTACCGCATTTGGTTCACAGAACACAGTCATCGTTGTTGGCTTGGATGGGAGTTTCTACAGGTGCAGTTTTGATCCAGTTCATGGAGGTGAGATGTTGCAGCAGGAATACGTACGGTTTCTGAAAACTGACAGTAGGCCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

411

Amino Acids

45.68

Weight (kDa)

6.89

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	74, 820, 1169
AciI	CCGC	2 cut(s)	42, 1092
AclWI	GGATC	3 cut(s)	483, 950, 1154
AcsI	RAATTY	4 cut(s)	380, 783, 904, 937
AcuI	CTGAAG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	6 cut(s)	297, 700, 709, 759, 844, 1200
AfiI	CCNNNNNNNGG	3 cut(s)	74, 820, 1169
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	146, 568
AluBI	AGCT	3 cut(s)	100, 484, 1038
AluI	AGCT	3 cut(s)	100, 484, 1038
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	306, 494
AlwI	GGATC	3 cut(s)	483, 950, 1154
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	3 cut(s)	571, 917, 1223
ApeKI	GCWGC	5 cut(s)	484, 487, 528, 824, 1186
ApoI	RAATTY	4 cut(s)	380, 783, 904, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	917
AsuHPI	GGTGA	3 cut(s)	134, 389, 1187
AvaI	CYCGRG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	1080
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	5 cut(s)	471, 474, 515, 836, 1198
BccI	CCATC	3 cut(s)	668, 731, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	2 cut(s)	148, 570
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	306, 494
BfaI	CTAG	4 cut(s)	516, 696, 953, 990
BfmI	CTRYAG	3 cut(s)	174, 504, 1144
BfuI	GTATCC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	46
BisI	GCNGC	5 cut(s)	485, 488, 529, 825, 1187
BlsI	GCNGC	5 cut(s)	486, 489, 530, 826, 1188
Bme1390I	CCNGG	2 cut(s)	148, 570
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	917
BmrFI	CCNGG	2 cut(s)	148, 570
BmsI	GCATC	5 cut(s)	61, 261, 272, 499, 836
BpiI	GAAGAC	1 cut(s)	1080
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	2 cut(s)	464, 897
BsaAI	YACGTR	1 cut(s)	1198
BsaBI	GATNNNNATC	2 cut(s)	357, 719
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	568
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 875, 905
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 820, 1169
Bse1I	ACTGG	4 cut(s)	814, 982, 1005, 1163
Bse3DI	GCAATG	1 cut(s)	930
Bse8I	GATNNNNATC	2 cut(s)	357, 719
BseBI	CCWGG	2 cut(s)	148, 570
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	5 cut(s)	358, 541, 679, 742, 1138
BseJI	GATNNNNATC	2 cut(s)	357, 719
BseLI	CCNNNNNNNGG	3 cut(s)	74, 820, 1169
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	4 cut(s)	387, 877, 1053, 1070
BseNI	ACTGG	4 cut(s)	814, 982, 1005, 1163
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	5 cut(s)	471, 474, 515, 836, 1198
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	1171
BshFI	GGCC	3 cut(s)	573, 919, 1225
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	24
BsiWI	CGTACG	1 cut(s)	1198
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	3 cut(s)	74, 820, 1169
BsmAI	GTCTC	2 cut(s)	306, 494
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	573, 919, 1225
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	355, 424, 475, 955, 1159
BspACI	CCGC	2 cut(s)	42, 1092
BspANI	GGCC	3 cut(s)	573, 919, 1225
BspCNI	CTCAG	4 cut(s)	388, 876, 1052, 1069
BspHI	TCATGA	2 cut(s)	637, 1008
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	3 cut(s)	483, 950, 1154
BsrDI	GCAATG	1 cut(s)	930
BsrI	ACTGG	4 cut(s)	814, 982, 1005, 1163
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	5 cut(s)	355, 424, 475, 955, 1159
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	148, 570
Bst4CI	ACNGT	9 cut(s)	13, 122, 191, 505, 791, 847, 1114, 1203, 1220
BstACI	GRCGYC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	1198
BstC8I	GCNNGC	8 cut(s)	42, 98, 178, 212, 561, 565, 655, 921
BstDEI	CTNAG	4 cut(s)	396, 863, 1039, 1056
BstF5I	GGATG	5 cut(s)	358, 541, 679, 742, 1138
BstKTI	GATC	5 cut(s)	358, 427, 478, 958, 1162
BstMAI	GTCTC	2 cut(s)	306, 494
BstMBI	GATC	5 cut(s)	355, 424, 475, 955, 1159
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 93
BstNI	CCWGG	2 cut(s)	148, 570
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	146, 568
BstSFI	CTRYAG	3 cut(s)	174, 504, 1144
BstSNI	TACGTA	1 cut(s)	1198
BstV1I	GCAGC	5 cut(s)	471, 474, 515, 836, 1198
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	2 cut(s)	475, 955
BstYI	RGATCY	2 cut(s)	475, 955
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	573, 919, 1225
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	5 cut(s)	358, 541, 679, 742, 1138
BtsIMutI	CAGTG	3 cut(s)	821, 975, 998
Cac8I	GCNNGC	8 cut(s)	42, 98, 178, 212, 561, 565, 655, 921
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	2 cut(s)	637, 1008
Cfr13I	GGNCC	1 cut(s)	917
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	6 cut(s)	296, 699, 708, 758, 843, 1199
CviAII	CATG	5 cut(s)	616, 638, 654, 1009, 1169
CviQI	GTAC	6 cut(s)	296, 699, 708, 758, 843, 1199
DdeI	CTNAG	4 cut(s)	396, 863, 1039, 1056
DpnI	GATC	5 cut(s)	357, 426, 477, 957, 1161
DpnII	GATC	5 cut(s)	355, 424, 475, 955, 1159
Eco105I	TACGTA	1 cut(s)	1198
Eco147I	AGGCCT	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	146, 568
FaeI	CATG	5 cut(s)	619, 641, 657, 1012, 1172
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	5 cut(s)	615, 637, 653, 1008, 1168
FauI	CCCGC	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	485, 488, 529, 825, 1187
FokI	GGATG	5 cut(s)	365, 528, 686, 749, 1145
Fsp4HI	GCNGC	5 cut(s)	485, 488, 529, 825, 1187
FspBI	CTAG	4 cut(s)	516, 696, 953, 990
GluI	GCNGC	5 cut(s)	485, 488, 529, 825, 1187
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	573, 919, 1225
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	619, 641, 657, 1012, 1172
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	6 cut(s)	62, 151, 255, 641, 720, 742
HpaI	GTTAAC	1 cut(s)	666
HphI	GGTGA	3 cut(s)	134, 389, 1187
Hpy166II	GTNNAC	4 cut(s)	463, 666, 772, 1103
Hpy188I	TCNGA	9 cut(s)	363, 397, 480, 495, 594, 807, 866, 1042, 1209
Hpy188III	TCNNGA	5 cut(s)	24, 155, 443, 638, 1009
Hpy8I	GTNNAC	4 cut(s)	463, 666, 772, 1103
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	9 cut(s)	13, 122, 191, 505, 791, 847, 1114, 1203, 1220
HpyCH4IV	ACGT	5 cut(s)	235, 459, 662, 810, 1197
HpyCH4V	TGCA	6 cut(s)	176, 285, 490, 653, 1152, 1186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 93
HpyF3I	CTNAG	4 cut(s)	396, 863, 1039, 1056
HpySE526I	ACGT	5 cut(s)	235, 459, 662, 810, 1197
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	5 cut(s)	619, 641, 657, 1012, 1172
Ksp22I	TGATCA	1 cut(s)	355
KspAI	GTTAAC	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	355, 424, 475, 955, 1159
Lsp1109I	GCAGC	5 cut(s)	471, 474, 515, 836, 1198
LweI	GCATC	5 cut(s)	61, 261, 272, 499, 836
MaeI	CTAG	4 cut(s)	516, 696, 953, 990
MaeII	ACGT	5 cut(s)	235, 459, 662, 810, 1197
MaeIII	GTNAC	2 cut(s)	132, 833
MalI	GATC	5 cut(s)	357, 426, 477, 957, 1161
MboI	GATC	5 cut(s)	355, 424, 475, 955, 1159
MboII	GAAGA	2 cut(s)	715, 1085
MflI	RGATCY	2 cut(s)	475, 955
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	8 cut(s)	261, 316, 380, 783, 904, 937, 985, 1082
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	4 cut(s)	204, 416, 626, 665
MslI	CAYNNNNRTG	1 cut(s)	1173
MspR9I	CCNGG	2 cut(s)	148, 570
MvaI	CCWGG	2 cut(s)	148, 570
MwoI	GCNNNNNNNGC	2 cut(s)	46, 93
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	5 cut(s)	355, 424, 475, 955, 1159
NlaIII	CATG	5 cut(s)	619, 641, 657, 1012, 1172
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	1 cut(s)	657
PaeI	GCATGC	1 cut(s)	657
PaeR7I	CTCGAG	1 cut(s)	24
PagI	TCATGA	2 cut(s)	637, 1008
PceI	AGGCCT	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	5 cut(s)	62, 151, 255, 641, 720
Pfl23II	CGTACG	1 cut(s)	1198
PflMI	CCANNNNNTGG	3 cut(s)	74, 820, 1169
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	486, 489, 530, 826, 1188
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Ppu21I	YACGTR	1 cut(s)	1198
Psp6I	CCWGG	2 cut(s)	146, 568
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	146, 568
PspLI	CGTACG	1 cut(s)	1198
PspPI	GGNCC	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	475, 955
RsaI	GTAC	6 cut(s)	297, 700, 709, 759, 844, 1200
RsaNI	GTAC	6 cut(s)	296, 699, 708, 758, 843, 1199
RseI	CAYNNNNRTG	1 cut(s)	1173
SaqAI	TTAA	4 cut(s)	204, 416, 626, 665
SatI	GCNGC	5 cut(s)	485, 488, 529, 825, 1187
Sau3AI	GATC	5 cut(s)	355, 424, 475, 955, 1159
Sau96I	GGNCC	1 cut(s)	917
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	148, 570
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	5 cut(s)	61, 261, 272, 499, 836
SfcI	CTRYAG	3 cut(s)	174, 504, 1144
Sfr274I	CTCGAG	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	1173
SmlI	CTYRAG	3 cut(s)	24, 443, 912
SmoI	CTYRAG	3 cut(s)	24, 443, 912
SnaBI	TACGTA	1 cut(s)	1198
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	8 cut(s)	261, 316, 380, 783, 904, 937, 985, 1082
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	2 cut(s)	42, 1092
SspI	AATATT	1 cut(s)	1031
SspMI	CTAG	4 cut(s)	516, 696, 953, 990
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	146, 568
TaaI	ACNGT	9 cut(s)	13, 122, 191, 505, 791, 847, 1114, 1203, 1220
TaiI	ACGT	5 cut(s)	238, 462, 665, 813, 1200
TaqI	TCGA	3 cut(s)	25, 280, 830
TasI	AATT	8 cut(s)	261, 316, 380, 783, 904, 937, 985, 1082
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	5 cut(s)	62, 151, 255, 641, 720
Tru1I	TTAA	4 cut(s)	204, 416, 626, 665
Tru9I	TTAA	4 cut(s)	204, 416, 626, 665
TscAI	CASTG	3 cut(s)	821, 982, 1005
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	5 cut(s)	484, 487, 528, 824, 1186
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	6 cut(s)	75, 375, 984, 997, 1075, 1157
TspRI	CASTG	3 cut(s)	821, 982, 1005
Van91I	CCANNNNNTGG	3 cut(s)	74, 820, 1169
XapI	RAATTY	4 cut(s)	380, 783, 904, 937
XceI	RCATGY	1 cut(s)	657
XhoI	CTCGAG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	4 cut(s)	516, 696, 953, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.