Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009717.1

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Reverse (-)

29539 .. 31576

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009717.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgagttcaacagtttcgacacctagagggatactgtcacccacaagacttggctcgtacgggtcgcctgatgctgggtcgtctggttcttttaccccgcttgaatcggacttcagtgatggtgacgagactgagttgcactctgtgtcctggaatcaggactatggttgctttgcggcaggcacaagtaatggttttcgtatctataactgtgagcctttcaaggagacttttagacgtgatttgaaaagtggtgggtttagaattgttgagatgttgttcagatgcaacattctcgtacttgttggtggtggagacaattcccaatatccacccaacaaagttatgatttgggatgatcatcagagccgatgtattggtgaattttcattcaggtctgagattcgtgcagtaaagttgagacgtgatcgcatagttgtggttcttgagcacaagatatatgtttacagcttcatggatcttaagctgctgcatcagatagaaactttatcaaatcccaggggattgtgttgcctttcacaccatcaaaatacatctgtgctggcttgcccaggccttcagcgggggcaagttcgaattgaacattttgggctgattatgacaaagttaatcaatgctcatgattctcatattgcatgcttcacgttaacaatggatgggctgcttcttgcaactgctagtaccaagggtactttaataagaatcttcaacacgatggatgggactcgcttacaagaggtacgcagaggtgtggacagagcagacatctatagtattgccctctctccgaatgttcagtggttggcagcatcaagtgacaaaggtactgtgcatatattcagcctcagagttagaggggttggaatggatttatctactcattcgaatgctgctcgagggccatcactttttcaacagaattcttcaaattccctagagcctcttatttctccaaacactggagccaattcgagttcatcgttgtctttcatgaaaggggttttacctaaatattttagctcagagtggtcttttgctcagttccacttgccagaagatacacaattcattactgcatttggttctcaaaacactgtcatcattgttggcctggatgggagcttctacaggtgcagttttgatccagtgaatggaggtgagatgttgcagcaggaatatgtacggtttctgaaaacagacagtagaccaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

411

Amino Acids

45.66

Weight (kDa)

7.63

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	980, 1172
AccI	GTMKAC	1 cut(s)	1225
AciI	CCGC	3 cut(s)	98, 176, 583
AclWI	GGATC	2 cut(s)	486, 1157
AcsI	RAATTY	3 cut(s)	383, 940, 949
AcuI	CTGAAG	2 cut(s)	97, 563
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	7 cut(s)	59, 300, 703, 712, 762, 847, 1203
AfiI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
AflII	CTTAAG	1 cut(s)	482
AgsI	TTSAA	8 cut(s)	9, 104, 223, 247, 602, 730, 935, 948
AjiI	CACGTC	2 cut(s)	239, 425
AjnI	CCWGG	4 cut(s)	149, 518, 571, 1131
AluBI	AGCT	4 cut(s)	471, 487, 1041, 1143
AluI	AGCT	4 cut(s)	471, 487, 1041, 1143
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	4 cut(s)	122, 221, 309, 415
AlwI	GGATC	2 cut(s)	486, 1157
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	3 cut(s)	574, 920, 1129
ApeKI	GCWGC	6 cut(s)	487, 490, 682, 827, 911, 1189
ApoI	RAATTY	3 cut(s)	383, 940, 949
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	4 cut(s)	30, 134, 392, 1190
AsuII	TTCGAA	2 cut(s)	595, 905
AvaI	CYCGRG	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	6 cut(s)	474, 477, 669, 839, 898, 1201
BccI	CCATC	7 cut(s)	113, 552, 671, 730, 734, 931, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	4 cut(s)	151, 520, 573, 1133
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	4 cut(s)	122, 221, 309, 415
BfaI	CTAG	3 cut(s)	24, 699, 956
BfmI	CTRYAG	2 cut(s)	790, 1147
BfrI	CTTAAG	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	7 cut(s)	177, 488, 491, 683, 828, 912, 1190
BlsI	GCNGC	7 cut(s)	178, 489, 492, 684, 829, 913, 1191
Bme1390I	CCNGG	4 cut(s)	151, 520, 573, 1133
BmeT110I	CYCGRG	1 cut(s)	915
BmgBI	CACGTC	2 cut(s)	239, 425
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	985
BmrFI	CCNGG	4 cut(s)	151, 520, 573, 1133
BmsI	GCATC	4 cut(s)	61, 275, 502, 839
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	1002
Bpu14I	TTCGAA	2 cut(s)	595, 905
BpuEI	CTTGAG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	4 cut(s)	518, 519, 571, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
Bse1I	ACTGG	2 cut(s)	985, 1166
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	4 cut(s)	151, 520, 573, 1133
BseDI	CCNNGG	4 cut(s)	518, 519, 571, 705
BseGI	GGATG	4 cut(s)	361, 682, 745, 1141
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
BseMII	CTCAG	5 cut(s)	123, 390, 880, 1056, 1073
BseNI	ACTGG	2 cut(s)	985, 1166
BseXI	GCAGC	6 cut(s)	474, 477, 669, 839, 898, 1201
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	429, 1174
BshFI	GGCC	3 cut(s)	576, 922, 1131
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	915
BsiWI	CGTACG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	4 cut(s)	74, 583, 980, 1172
BsmAI	GTCTC	4 cut(s)	122, 221, 309, 415
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	757
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	3 cut(s)	576, 922, 1131
BsoBI	CYCGRG	1 cut(s)	915
Bsp119I	TTCGAA	2 cut(s)	595, 905
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	358, 427, 478, 1162
BspACI	CCGC	3 cut(s)	98, 176, 583
BspANI	GGCC	3 cut(s)	576, 922, 1131
BspCNI	CTCAG	5 cut(s)	124, 391, 879, 1055, 1072
BspHI	TCATGA	2 cut(s)	640, 1011
BspLI	GGNNCC	1 cut(s)	985
BspPI	GGATC	2 cut(s)	486, 1157
BspT104I	TTCGAA	2 cut(s)	595, 905
BspTI	CTTAAG	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	985, 1166
BssECI	CCNNGG	4 cut(s)	518, 519, 571, 705
BssMI	GATC	4 cut(s)	358, 427, 478, 1162
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	4 cut(s)	151, 520, 573, 1133
Bst4CI	ACNGT	7 cut(s)	13, 36, 212, 850, 1117, 1206, 1223
BstAFI	CTTAAG	1 cut(s)	482
BstBI	TTCGAA	2 cut(s)	595, 905
BstC8I	GCNNGC	4 cut(s)	181, 564, 568, 658
BstDEI	CTNAG	5 cut(s)	132, 399, 866, 1042, 1059
BstF5I	GGATG	4 cut(s)	361, 682, 745, 1141
BstKTI	GATC	4 cut(s)	361, 430, 481, 1165
BstMAI	GTCTC	4 cut(s)	122, 221, 309, 415
BstMBI	GATC	4 cut(s)	358, 427, 478, 1162
BstNI	CCWGG	4 cut(s)	151, 520, 573, 1133
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	4 cut(s)	149, 518, 571, 1131
BstSFI	CTRYAG	2 cut(s)	790, 1147
BstV1I	GCAGC	6 cut(s)	474, 477, 669, 839, 898, 1201
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	576, 922, 1131
BtrI	CACGTC	2 cut(s)	239, 425
BtsCI	GGATG	4 cut(s)	361, 682, 745, 1141
BtsIMutI	CAGTG	5 cut(s)	121, 824, 978, 1113, 1173
Cac8I	GCNNGC	4 cut(s)	181, 564, 568, 658
CciI	TCATGA	2 cut(s)	640, 1011
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	4 cut(s)	475, 641, 657, 1012
CviQI	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
DdeI	CTNAG	5 cut(s)	132, 399, 866, 1042, 1059
DpnI	GATC	4 cut(s)	360, 429, 480, 1164
DpnII	GATC	4 cut(s)	358, 427, 478, 1162
DraIII	CACNNNGTG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	97, 563
Eco88I	CYCGRG	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	4 cut(s)	149, 518, 571, 1131
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	4 cut(s)	478, 644, 660, 1015
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	4 cut(s)	474, 640, 656, 1011
FauI	CCCGC	2 cut(s)	105, 576
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	1225
Fnu4HI	GCNGC	7 cut(s)	177, 488, 491, 683, 828, 912, 1190
FokI	GGATG	4 cut(s)	368, 689, 752, 1148
Fsp4HI	GCNGC	7 cut(s)	177, 488, 491, 683, 828, 912, 1190
FspBI	CTAG	3 cut(s)	24, 699, 956
GluI	GCNGC	7 cut(s)	177, 488, 491, 683, 828, 912, 1190
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	3 cut(s)	576, 922, 1131
Hin1II	CATG	4 cut(s)	478, 644, 660, 1015
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	6 cut(s)	104, 154, 403, 644, 723, 745
HpaI	GTTAAC	1 cut(s)	669
HphI	GGTGA	4 cut(s)	30, 134, 392, 1190
Hpy166II	GTNNAC	4 cut(s)	466, 669, 775, 1226
Hpy188I	TCNGA	9 cut(s)	109, 284, 366, 400, 498, 810, 869, 1045, 1212
Hpy188III	TCNNGA	4 cut(s)	158, 446, 641, 1012
Hpy8I	GTNNAC	4 cut(s)	466, 669, 775, 1226
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	7 cut(s)	13, 36, 212, 850, 1117, 1206, 1223
HpyCH4IV	ACGT	3 cut(s)	238, 424, 665
HpyF3I	CTNAG	5 cut(s)	132, 399, 866, 1042, 1059
HpySE526I	ACGT	3 cut(s)	238, 424, 665
Hsp92II	CATG	4 cut(s)	478, 644, 660, 1015
Ksp22I	TGATCA	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	358, 427, 478, 1162
LmnI	GCTCC	2 cut(s)	983, 1140
Lsp1109I	GCAGC	6 cut(s)	474, 477, 669, 839, 898, 1201
LweI	GCATC	4 cut(s)	61, 275, 502, 839
MaeI	CTAG	3 cut(s)	24, 699, 956
MaeII	ACGT	3 cut(s)	238, 424, 665
MaeIII	GTNAC	3 cut(s)	36, 122, 836
MalI	GATC	4 cut(s)	360, 429, 480, 1164
MboI	GATC	4 cut(s)	358, 427, 478, 1162
MboII	GAAGA	3 cut(s)	718, 936, 1088
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	8 cut(s)	264, 319, 383, 597, 940, 949, 988, 1085
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	9 cut(s)	20, 751, 761, 812, 869, 875, 911, 972, 1169
MseI	TTAA	4 cut(s)	483, 629, 668, 716
MslI	CAYNNNNRTG	2 cut(s)	437, 906
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	482
MspR9I	CCNGG	4 cut(s)	151, 520, 573, 1133
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	4 cut(s)	151, 520, 573, 1133
NdeII	GATC	4 cut(s)	358, 427, 478, 1162
NlaIII	CATG	4 cut(s)	478, 644, 660, 1015
NlaIV	GGNNCC	1 cut(s)	985
NmuCI	GTSAC	3 cut(s)	36, 122, 836
NspI	RCATGY	1 cut(s)	660
NspV	TTCGAA	2 cut(s)	595, 905
PaeI	GCATGC	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	915
PagI	TCATGA	2 cut(s)	640, 1011
PasI	CCCWGGG	1 cut(s)	519
PceI	AGGCCT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	998
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	5 cut(s)	104, 154, 403, 644, 723
Pfl23II	CGTACG	1 cut(s)	57
PflMI	CCANNNNNTGG	2 cut(s)	980, 1172
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	7 cut(s)	178, 489, 492, 684, 829, 913, 1191
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp6I	CCWGG	4 cut(s)	149, 518, 571, 1131
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	149, 518, 571, 1131
PspLI	CGTACG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	985
PspPI	GGNCC	1 cut(s)	920
PspXI	VCTCGAGB	1 cut(s)	915
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	7 cut(s)	59, 300, 703, 712, 762, 847, 1203
RsaNI	GTAC	7 cut(s)	58, 299, 702, 711, 761, 846, 1202
RseI	CAYNNNNRTG	2 cut(s)	437, 906
SaqAI	TTAA	4 cut(s)	483, 629, 668, 716
SatI	GCNGC	7 cut(s)	177, 488, 491, 683, 828, 912, 1190
Sau3AI	GATC	4 cut(s)	358, 427, 478, 1162
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	4 cut(s)	151, 520, 573, 1133
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	4 cut(s)	61, 275, 502, 839
SfcI	CTRYAG	2 cut(s)	790, 1147
Sfr274I	CTCGAG	1 cut(s)	915
SfuI	TTCGAA	2 cut(s)	595, 905
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	2 cut(s)	437, 906
SmlI	CTYRAG	3 cut(s)	446, 482, 915
SmoI	CTYRAG	3 cut(s)	446, 482, 915
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	8 cut(s)	264, 319, 383, 597, 940, 949, 988, 1085
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	98, 176, 583
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	3 cut(s)	24, 699, 956
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	4 cut(s)	149, 518, 571, 1131
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	7 cut(s)	13, 36, 212, 850, 1117, 1206, 1223
TaiI	ACGT	3 cut(s)	241, 427, 668
TaqI	TCGA	5 cut(s)	17, 595, 905, 916, 992
TasI	AATT	8 cut(s)	264, 319, 383, 597, 940, 949, 988, 1085
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	5 cut(s)	104, 154, 403, 644, 723
Tru1I	TTAA	4 cut(s)	483, 629, 668, 716
Tru9I	TTAA	4 cut(s)	483, 629, 668, 716
TscAI	CASTG	5 cut(s)	121, 824, 985, 1120, 1173
TseFI	GTSAC	3 cut(s)	36, 122, 836
TseI	GCWGC	6 cut(s)	487, 490, 682, 827, 911, 1189
Tsp45I	GTSAC	3 cut(s)	36, 122, 836
TspDTI	ATGAA	6 cut(s)	378, 463, 987, 1000, 1028, 1078
TspRI	CASTG	5 cut(s)	121, 824, 985, 1120, 1173
Van91I	CCANNNNNTGG	2 cut(s)	980, 1172
Vha464I	CTTAAG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	383, 940, 949
XceI	RCATGY	1 cut(s)	660
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	1225
XspI	CTAG	3 cut(s)	24, 699, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.