AT3G56440

Autophagy-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
20926001 .. 20928993
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56440.2

Sequence Viewer

Length: 1176 bp
ATGGATCCTCGGAGAAACTTCCAACCAGGTGGCTATGACTCTCGGAATACCTTCACTTCAGGATCTTTTGGGCCTCCAGATTTTGGTGAAAGTGATGAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATTACAGTTGTTTTGCTGCTGGCACTAGCCATGGTTTTCGTATATATAACTGTGAACCGTTCAAGGAAACTTTTAGGCGAGAGCTGAAGGATGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGGAGTAATATCTTGGCGCTTGTTGGTGGTGGACCTAACTCCCAGTACCCTTCAAATAAAGTATTGATTTGGGATGATCATCAGGGGCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATTCGTGCAGTGAAGTTAAGAAGAGATCGAATTGTTGTTGTTCTTGAGCACAAGATATATGTCTACAATTTTATGGATCTAAGACTTCTTCATCAGATTGAAAATATGGCAAATCCAAGGGGACTATGTTGCCTCTCTCATCACATGAATACATCTGTCTTGGCTTGTCCAGGTATTCGTCGAGGAGAGGTCCGAGTTGAACATTTTGGGCTTAACATGGTTCAAATCATTAATGCTCATGATTCTAATATCGCGTGCATGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACAAAGGGAACTCTGATTAGAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGAAGAGGCGTGGACAGAGCAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTTGCAGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGAGTTATAGGGGAGGACGCATACTCCACTGAACATGAGACTTCTTCAAATTCCCTGCAGCCTCTTGTTTCTCCAGCCAGTGGTGCCAACCCTGGTTCGTCATTGTCTTTTCTGAGAGGTGTTCTACCAAAATATTTCAGCTCGGAATGGTCATTTTCTCAGTTCCATGTACCTGAAGTCACCCAATACTTTGCAGCATTTGGTGCTCAGAACACAATTGCAATTATTGGCTTGGACGGAAGTTTCTACAGGTGCAATTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCCATTTTCTGAAGCAAGATAGCCCGAGATAG

Protein Analysis

391

Amino Acids

43.89

Weight (kDa)

6.5

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 35 - 300 3.8e-15 THOC3 beta-propeller domain
PROPPIN PF21032 37 - 280 9.7e-38 PROPPIN
WD40_CDC20-Fz PF24807 132 - 282 5.3e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 197 - 279 3.8e-07 WDR5 beta-propeller domain
WD40_Prp19 PF24814 203 - 282 2.7e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 926
AccB7I CCANNNNNTGG 2 cut(s) 83, 923
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 626
AccIII TCCGGA 1 cut(s) 252
AclWI GGATC 4 cut(s) 12, 70, 456, 1100
AcsI RAATTY 3 cut(s) 372, 693, 892
AcuI CTGAAG 4 cut(s) 42, 236, 1038, 1175
AfaI GTAC 3 cut(s) 299, 673, 1014
AfiI CCNNNNNNNGG 3 cut(s) 83, 923, 1115
AgsI TTSAA 8 cut(s) 193, 306, 473, 572, 596, 700, 891, 1139
AjnI CCWGG 3 cut(s) 25, 541, 934
AluBI AGCT 3 cut(s) 214, 984, 1135
AluI AGCT 3 cut(s) 214, 984, 1135
Alw21I GWGCWC 2 cut(s) 423, 1051
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 4 cut(s) 12, 70, 456, 1100
Ama87I CYCGRG 1 cut(s) 1168
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 146, 342, 901, 1037
ApoI RAATTY 3 cut(s) 372, 693, 892
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 271, 342
AspS9I GGNCC 4 cut(s) 71, 284, 562, 730
AsuHPI GGTGA 3 cut(s) 98, 768, 1015
AvaI CYCGRG 1 cut(s) 1168
AvaII GGWCC 3 cut(s) 284, 562, 730
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 926
Bbv12I GWGCWC 2 cut(s) 423, 1051
BbvI GCAGC 4 cut(s) 133, 329, 913, 1049
BccI CCATC 3 cut(s) 215, 641, 700
BciT130I CCWGG 3 cut(s) 27, 543, 936
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 3 cut(s) 760, 899, 1090
BfoI RGCGCY 2 cut(s) 272, 343
BisI GCNGC 4 cut(s) 147, 343, 902, 1038
BlsI GCNGC 4 cut(s) 148, 344, 903, 1039
Bme1390I CCNGG 3 cut(s) 27, 543, 936
Bme18I GGWCC 3 cut(s) 284, 562, 730
BmeT110I CYCGRG 1 cut(s) 1168
BmgT120I GGNCC 4 cut(s) 71, 284, 562, 730
BmiI GGNNCC 2 cut(s) 6, 928
BmrFI CCNGG 3 cut(s) 27, 543, 936
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 234, 354
BmuI ACTGGG 1 cut(s) 289
BpmI CTGGAG 2 cut(s) 60, 900
BpuEI CTTGAG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 8, 160, 488, 934
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 923, 1115
Bse1I ACTGG 4 cut(s) 295, 669, 921, 1109
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 3 cut(s) 27, 543, 936
BseDI CCNNGG 4 cut(s) 8, 160, 488, 934
BseGI GGATG 3 cut(s) 226, 331, 652
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 83, 923, 1115
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 5 cut(s) 850, 947, 1016, 1064, 1145
BseNI ACTGG 4 cut(s) 295, 669, 921, 1109
BseRI GAGGAG 2 cut(s) 570, 1134
BseXI GCAGC 4 cut(s) 133, 329, 913, 1049
BsgI GTGCAG 2 cut(s) 399, 806
Bsh1236I CGCG 1 cut(s) 626
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 926
BsiEI CGRYCG 1 cut(s) 368
BsiHKAI GWGCWC 2 cut(s) 423, 1051
BsiHKCI CYCGRG 1 cut(s) 1168
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 507, 829
BslI CCNNNNNNNGG 3 cut(s) 83, 923, 1115
BsmAI GTCTC 1 cut(s) 875
BsmFI GGGAC 2 cut(s) 507, 829
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 1168
Bsp1286I GDGCHC 2 cut(s) 423, 1051
Bsp13I TCCGGA 1 cut(s) 252
Bsp143I GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
Bsp19I CCATGG 1 cut(s) 160
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 5 cut(s) 849, 948, 1015, 1063, 1144
BspEI TCCGGA 1 cut(s) 252
BspFNI CGCG 1 cut(s) 626
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 6, 928
BspMAI CTGCAG 1 cut(s) 903
BspPI GGATC 4 cut(s) 12, 70, 456, 1100
BspT107I GGYRCC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 4 cut(s) 295, 669, 921, 1109
BssECI CCNNGG 4 cut(s) 8, 160, 488, 934
BssMI GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
BssT1I CCWWGG 2 cut(s) 160, 488
Bst2UI CCWGG 3 cut(s) 27, 543, 936
Bst4CI ACNGT 4 cut(s) 137, 182, 189, 820
Bst6I CTCTTC 2 cut(s) 388, 730
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstC8I GCNNGC 4 cut(s) 151, 628, 653, 795
BstDEI CTNAG 6 cut(s) 452, 836, 956, 1002, 1050, 1131
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 3 cut(s) 226, 331, 652
BstFNI CGCG 1 cut(s) 626
BstH2I RGCGCY 2 cut(s) 272, 343
BstHHI GCGC 2 cut(s) 271, 342
BstKTI GATC 6 cut(s) 7, 65, 331, 400, 451, 1108
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 926, 1046
BstNI CCWGG 3 cut(s) 27, 543, 936
BstSCI CCNGG 3 cut(s) 25, 541, 934
BstSFI CTRYAG 3 cut(s) 760, 899, 1090
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 133, 329, 913, 1049
BstX2I RGATCY 3 cut(s) 4, 62, 448
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 3 cut(s) 4, 62, 448
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 3 cut(s) 226, 331, 652
BtsI GCAGTG 2 cut(s) 387, 794
BtsIMutI CAGTG 6 cut(s) 355, 387, 794, 870, 928, 1116
Cac8I GCNNGC 4 cut(s) 151, 628, 653, 795
CciI TCATGA 1 cut(s) 610
CfoI GCGC 2 cut(s) 271, 342
Cfr13I GGNCC 4 cut(s) 71, 284, 562, 730
CseI GACGC 1 cut(s) 869
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 3 cut(s) 298, 672, 1013
CviAII CATG 7 cut(s) 161, 517, 589, 611, 631, 878, 1010
CviQI GTAC 3 cut(s) 298, 672, 1013
DdeI CTNAG 6 cut(s) 452, 836, 956, 1002, 1050, 1131
DpnI GATC 6 cut(s) 6, 64, 330, 399, 450, 1107
DpnII GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 388, 730
EarI CTCTTC 2 cut(s) 388, 730
Eco130I CCWWGG 2 cut(s) 160, 488
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 3 cut(s) 284, 562, 730
Eco57I CTGAAG 4 cut(s) 42, 236, 1038, 1175
Eco88I CYCGRG 1 cut(s) 1168
EcoRII CCWGG 3 cut(s) 25, 541, 934
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 160, 488
ErhI CCWWGG 2 cut(s) 160, 488
FaeI CATG 7 cut(s) 164, 520, 592, 614, 634, 881, 1013
FaqI GGGAC 2 cut(s) 507, 829
FatI CATG 7 cut(s) 160, 516, 588, 610, 630, 877, 1009
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 4 cut(s) 147, 343, 902, 1038
FokI GGATG 3 cut(s) 233, 338, 659
Fsp4HI GCNGC 4 cut(s) 147, 343, 902, 1038
FspBI CTAG 1 cut(s) 156
GlaI GCGC 2 cut(s) 270, 341
GluI GCNGC 4 cut(s) 147, 343, 902, 1038
GsuI CTGGAG 2 cut(s) 60, 900
HaeII RGCGCY 2 cut(s) 272, 343
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 869
HhaI GCGC 2 cut(s) 271, 342
Hin1II CATG 7 cut(s) 164, 520, 592, 614, 634, 881, 1013
Hin6I GCGC 2 cut(s) 269, 340
HinP1I GCGC 2 cut(s) 269, 340
HinfI GANTC 4 cut(s) 38, 124, 614, 1129
HpaII CCGG 1 cut(s) 253
HphI GGTGA 3 cut(s) 98, 768, 1015
Hpy166II GTNNAC 7 cut(s) 185, 284, 357, 436, 745, 823, 1114
Hpy188III TCNNGA 6 cut(s) 60, 77, 128, 253, 416, 611
Hpy8I GTNNAC 7 cut(s) 185, 284, 357, 436, 745, 823, 1114
Hpy99I CGWCG 1 cut(s) 555
HpyAV CCTTC 3 cut(s) 61, 211, 312
HpyCH4III ACNGT 4 cut(s) 137, 182, 189, 820
HpyCH4IV ACGT 1 cut(s) 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 926, 1046
HpyF3I CTNAG 6 cut(s) 452, 836, 956, 1002, 1050, 1131
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 7 cut(s) 164, 520, 592, 614, 634, 881, 1013
HspAI GCGC 2 cut(s) 269, 340
Kpn2I TCCGGA 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 4 cut(s) 133, 329, 913, 1049
LweI GCATC 2 cut(s) 234, 354
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 1 cut(s) 1021
MalI GATC 6 cut(s) 6, 64, 330, 399, 450, 1107
MboI GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
MboII GAAGA 4 cut(s) 405, 452, 747, 879
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 3 cut(s) 4, 62, 448
MhlI GDGCHC 2 cut(s) 423, 1051
MluCI AATT 9 cut(s) 234, 372, 402, 439, 693, 892, 1059, 1065, 1099
MlyI GAGTC 2 cut(s) 32, 1123
MmeI TCCRAC 2 cut(s) 46, 348
MroI TCCGGA 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 231, 389, 585, 603
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 3 cut(s) 27, 543, 936
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 3 cut(s) 27, 543, 936
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 2 cut(s) 926, 1046
NcoI CCATGG 1 cut(s) 160
NdeII GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
NlaIII CATG 7 cut(s) 164, 520, 592, 614, 634, 881, 1013
NlaIV GGNNCC 2 cut(s) 6, 928
NmuCI GTSAC 1 cut(s) 1021
PagI TCATGA 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 124, 614
PflMI CCANNNNNTGG 2 cut(s) 83, 923
PkrI GCNGC 4 cut(s) 148, 344, 903, 1039
PleI GAGTC 2 cut(s) 32, 1123
PpsI GAGTC 2 cut(s) 32, 1123
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 25, 541, 934
PspGI CCWGG 3 cut(s) 25, 541, 934
PspN4I GGNNCC 2 cut(s) 6, 928
PspPI GGNCC 4 cut(s) 71, 284, 562, 730
PstI CTGCAG 1 cut(s) 903
PsuI RGATCY 3 cut(s) 4, 62, 448
RsaI GTAC 3 cut(s) 299, 673, 1014
RsaNI GTAC 3 cut(s) 298, 672, 1013
SaqAI TTAA 4 cut(s) 231, 389, 585, 603
SatI GCNGC 4 cut(s) 147, 343, 902, 1038
Sau3AI GATC 6 cut(s) 4, 62, 328, 397, 448, 1105
Sau96I GGNCC 4 cut(s) 71, 284, 562, 730
SchI GAGTC 2 cut(s) 32, 1123
ScrFI CCNGG 3 cut(s) 27, 543, 936
SduI GDGCHC 2 cut(s) 423, 1051
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 2 cut(s) 234, 354
SfcI CTRYAG 3 cut(s) 760, 899, 1090
SinI GGWCC 3 cut(s) 284, 562, 730
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 9 cut(s) 234, 372, 402, 439, 693, 892, 1059, 1065, 1099
SspI AATATT 1 cut(s) 977
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 25, 541, 934
StyI CCWWGG 2 cut(s) 160, 488
TaaI ACNGT 4 cut(s) 137, 182, 189, 820
TaiI ACGT 1 cut(s) 786
TaqI TCGA 3 cut(s) 400, 553, 1104
TaqII GACCGA 1 cut(s) 354
TasI AATT 9 cut(s) 234, 372, 402, 439, 693, 892, 1059, 1065, 1099
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 2 cut(s) 124, 614
Tru1I TTAA 4 cut(s) 231, 389, 585, 603
Tru9I TTAA 4 cut(s) 231, 389, 585, 603
TscAI CASTG 6 cut(s) 355, 387, 794, 877, 928, 1116
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 4 cut(s) 146, 342, 901, 1037
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 3 cut(s) 111, 452, 533
TspGWI ACGGA 3 cut(s) 726, 1095, 1131
TspRI CASTG 6 cut(s) 355, 387, 794, 877, 928, 1116
Van91I CCANNNNNTGG 2 cut(s) 83, 923
VpaK11BI GGWCC 3 cut(s) 284, 562, 730
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 3 cut(s) 372, 693, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.