Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008583

Physical Location & Seq

Genomic Coordinates Forward (+)

48811662 .. 48813725

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGTGATGCAATTGATTTAACTGGAGATGGAGGTGTGCTCAAGAAGATTGTAAGGCATGCCAAACCGGATGCAACTGGTCCGACGCAAGACCTTCCTCTTGTTGATGTTCATTATGAAGGGGTTCTTGAGGAAACTGGGGAAGTGTTTGATACGACTCATGAGGACAATACGATTTTCTCATTTGAGATTGGGAAGGGCAGTGTAATCAAGGCTTGGGATGTCGCACTGAGAACCATGAAGGTTGGCGAGATTGCTAAGATCACTTGCAAGCCCGAATATGCTTATGGCAGTGCAGGGTCTCCACCAGATATCCCACCAGATGCAACCCTTATATTTGAGGTGGAGTTAGTTGCCTGCAACCCACGGAAGGGATTGAGTCTGGGTAGTGCTTCAGAGGAAAGGAATAGGCTAGAAGAACTGAAGAAGCAGAGAGAGCTTGCTGCTGCAACCAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCCGCTGCTGCCCGTATTCAAGCTAAGTTAGATGCCAAGAAGGGAGGAAAGGGAAAAGGCAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

187

Amino Acids

20.13

Weight (kDa)

6.36

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	34 - 118	6.6e-30	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40810 AT2G40810 AT2G40810 AT3G56440 AT3G56440
fragaria_vesca	FvH4_7g26300
malus_domestica	MD01G1171900.v1.1 MD07G1238000.v1.1
prunus_persica	Prupe.2G267100_v2.0.a1 Prupe.2G267100_v2.0.a1
pyrus_communis	pycom01g18370 pycom07g21400
rosa_chinensis	RchiOBHm_Chr1g0372741
rosa_laevigata	RLG00000026876
rosa_multiflora	Rmu_sc0009717.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284720
rosa_rugosa	Rorug01G0373900 Rorug01G0374000
rosa_samantha	Rh1AG382700 Rh1BG346200 Rh1CG359500 Rh1DG377300
rosa_wichuraiana	Rw1G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AcuI	CTGAAG	2 cut(s)	378, 443
AfiI	CCNNNNNNNGG	2 cut(s)	370, 371
AgsI	TTSAA	1 cut(s)	512
AluBI	AGCT	3 cut(s)	439, 491, 515
AluI	AGCT	3 cut(s)	439, 491, 515
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	5 cut(s)	443, 446, 491, 497, 500
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	5 cut(s)	430, 433, 478, 484, 487
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	6 cut(s)	444, 447, 492, 495, 498, 501
BlsI	GCNGC	6 cut(s)	445, 448, 493, 496, 499, 502
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	3 cut(s)	61, 313, 514
BmuI	ACTGGG	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	26, 149
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 371
Bse1I	ACTGG	3 cut(s)	28, 82, 142
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	76, 226
BseLI	CCNNNNNNNGG	2 cut(s)	370, 371
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	3 cut(s)	28, 82, 142
BseXI	GCAGC	5 cut(s)	430, 433, 478, 484, 487
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	370, 371
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	28, 82, 142
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	261
Bst6I	CTCTTC	3 cut(s)	456, 467, 474
BstC8I	GCNNGC	4 cut(s)	60, 272, 358, 441
BstDEI	CTNAG	3 cut(s)	230, 258, 516
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	76, 226
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 491, 497, 500
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	430, 433, 478, 484, 487
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	76, 226
BtsI	GCAGTG	2 cut(s)	208, 298
BtsIMutI	CAGTG	3 cut(s)	208, 227, 298
Cac8I	GCNNGC	4 cut(s)	60, 272, 358, 441
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	94
CviAII	CATG	3 cut(s)	59, 161, 238
CviJI	RGCY	7 cut(s)	215, 274, 412, 439, 485, 491, 515
CviKI_1	RGCY	7 cut(s)	215, 274, 412, 439, 485, 491, 515
DdeI	CTNAG	3 cut(s)	230, 258, 516
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	456, 467, 474
EarI	CTCTTC	3 cut(s)	456, 467, 474
Eco31I	GGTCTC	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	378, 443
EcoRV	GATATC	1 cut(s)	313
FaeI	CATG	3 cut(s)	62, 164, 241
FaiI	YATR	7 cut(s)	60, 117, 162, 239, 282, 288, 335
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	3 cut(s)	58, 160, 237
Fnu4HI	GCNGC	6 cut(s)	444, 447, 492, 495, 498, 501
FokI	GGATG	2 cut(s)	83, 233
Fsp4HI	GCNGC	6 cut(s)	444, 447, 492, 495, 498, 501
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	6 cut(s)	444, 447, 492, 495, 498, 501
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	62, 164, 241
HinfI	GANTC	2 cut(s)	157, 379
HpaII	CCGG	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	84, 397
Hpy188III	TCNNGA	3 cut(s)	43, 128, 161
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	6 cut(s)	104, 113, 190, 235, 364, 526
HpyCH4V	TGCA	7 cut(s)	11, 74, 270, 296, 326, 360, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 491, 497, 500
HpyF3I	CTNAG	3 cut(s)	230, 258, 516
Hsp92II	CATG	3 cut(s)	62, 164, 241
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	9 cut(s)	9, 63, 81, 123, 282, 321, 333, 368, 370
Lsp1109I	GCAGC	5 cut(s)	430, 433, 478, 484, 487
LweI	GCATC	3 cut(s)	61, 313, 514
MaeI	CTAG	1 cut(s)	413
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	8 cut(s)	58, 428, 436, 473, 478, 481, 484, 491
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	151, 388
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	9 cut(s)	26, 108, 124, 157, 334, 391, 451, 475, 530
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	436, 491, 497, 500
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	62, 164, 241
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	445, 448, 493, 496, 499, 502
PleI	GAGTC	2 cut(s)	151, 387
PpsI	GAGTC	2 cut(s)	151, 387
PspPI	GGNCC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	6 cut(s)	444, 447, 492, 495, 498, 501
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	151, 388
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	7 cut(s)	37, 96, 246, 345, 441, 493, 517
SfaNI	GCATC	3 cut(s)	61, 313, 514
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	41, 128
SmoI	CTYRAG	2 cut(s)	41, 128
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	1 cut(s)	413
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	3 cut(s)	208, 234, 298
TseI	GCWGC	5 cut(s)	443, 446, 491, 497, 500
TspDTI	ATGAA	3 cut(s)	101, 132, 254
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	3 cut(s)	208, 234, 298
VpaK11BI	GGWCC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.