AT2G40820

Myosin heavy chain-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005999
Physical Location & Seq
Reverse (-)
17036442 .. 17040358
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40820.1

Sequence Viewer

Length: 1479 bp
ATGACTAAAGTATGTCCTAAAACAGAAGAAAAGAGAGTGGTGTCTGAAGCTGTGGTTGAACCAATTTCAGCAGATGTGAGCTTTGCTTCTAATCATTTTCCAACGTACAAGTTAGGACCTGATGATCAGATTGTTGATGAACCTGATGAAGATGATAAAGTTCCATCTGTCAAAGATGTCGTCGGTAAGGAGACCGGAGATTTGTCAGATCAGCACAAGAAGCTTTCTGTTCGTGATCTCGCTTGCAAATTTGACAAGAATTTAGCTGCAGCTTCTAAGTTAGTTGATGAGGCAAAGTTAAACGATGTGACTTCTTTGGAAGGACATGTTATGCTAAAGAAACTTAGGGATGCTTTAGAAACCATGAGAGGTCGTATGGATGGAAGAAACAGAGAAGCAGTGGAAAAAGCTATCTCCATGGTTGAGGCACTAGCCGTTAAGTTAACTCAAAATGAAGGTGAACTAATTCATGATAAGTTTGAAGTGAAGAAACTGGCAAGCTTCCTCAAGAAGGCTTCAGACGACGCGAAGAAGTTAGTAAACCAAGAAAAGTCGTTTGCTTGTGCTGAAATAGAGAGTGCACGGGCTCTTGTGATGAAACTTGGAGGTGCATTTGAAGAACAGGAGCTTTGTTCTAAAGCTTCTAGAGATCAGGGACCGAATGTGGAGAAATTGGTTGAGGAGGTTCAGGAGGCTAGACGAATTAGACGGTTGCATAAACCAACCATGGTGATCGGTATGCAACATGAGCTTCGTGATTTAAAGAGTCAAATCCAAGAGAAGTCTGCATATTCCGTTAAACTTCAAAGAGAGATAGCAATAATTAAGAAAGCTGAGGGGTCCAAGTCATGTCCGTATGTTCTGGATGGTGCACAAAGTCTTGGCTCGTGCCTAAGAATCCGTGCCTCCTCAGACAGTGGTATAGATATTTCCAAATGCTCAATCCATTGGTACCGTGCAGCATCTGAGTCTAGTCGAAGAGAAGCTATATCTGGTGCCAACCGGTCAGTATATGCTCCAGAACCATTTGATGTCGGGCGAGTGATACAAGCAGACATTGTTTCAAATGGCCAGAAGTTCACCGTTACAACCGATGGTCCAATTAATACTGCTGCTGGCTTGCAGTCACGCGTTGAATCACTCCTGCGCAAATCTAACAGTGAATTCACCGTGGTTATATCACAGATGAATGGACAAGACCATGCATCACGATCCCATGTATTTACTGTTGGAAAGGCGAGGATAAAGCTGTCCCGAGGATGGATCACAAAGGCTAGAGAAATATATTCAACCTCCATGCAGCTCTGTGGAGTGAGAGGCAATGCTAACGTTCCTGCAAAGGCATTGTTCTGGCAACTTAGAAAGGGTCTAACTTTCTTACTAACTTTCGAGTCAGAGCAAGAACGTAATGCAGCCATAGTACTCGCACGAACATATGCATATGATTGTAATGTCACTCTAGTTGGTCCAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007623 GO:0008150 GO:0016020 GO:0044464 GO:0048511 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

492

Amino Acids

54.43

Weight (kDa)

8.54

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAB-ABD PF16711 57 - 99 4.8e-23 Actin-binding domain of plant-specific actin-binding protein
SCAB_CC PF16712 103 - 272 2.9e-73 Coiled-coil regions of plant-specific actin-binding protein
SCAB-Ig PF16709 286 - 383 9e-45 Ig domain of plant-specific actin-binding protein
SCAB-PH PF17684 386 - 492 1.3e-53 PH domain of plant-specific actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1148
Acc65I GGTACC 1 cut(s) 951
AccB1I GGYRCC 2 cut(s) 951, 995
AccII CGCG 2 cut(s) 527, 1131
AclI AACGTT 1 cut(s) 1329
AclWI GGATC 2 cut(s) 1206, 1271
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 3 cut(s) 248, 259, 1163
AcuI CTGAAG 2 cut(s) 66, 501
AfaI GTAC 3 cut(s) 107, 953, 1422
AfiI CCNNNNNNNGG 2 cut(s) 511, 1260
AflIII ACRYGT 2 cut(s) 325, 1129
AgeI ACCGGT 1 cut(s) 1002
AgsI TTSAA 7 cut(s) 59, 482, 617, 806, 1065, 1136, 1290
Alw21I GWGCWC 2 cut(s) 583, 874
Alw26I GTCTC 1 cut(s) 185
Alw44I GTGCAC 2 cut(s) 579, 870
AlwI GGATC 2 cut(s) 1206, 1271
AlwNI CAGNNNCTG 1 cut(s) 965
Ama87I CYCGRG 1 cut(s) 1254
AoxI GGCC 1 cut(s) 1069
ApaLI GTGCAC 2 cut(s) 579, 870
ApeKI GCWGC 6 cut(s) 266, 269, 959, 1112, 1300, 1412
ApoI RAATTY 3 cut(s) 248, 259, 1163
ArsI GACNNNNNNTTYG 4 cut(s) 165, 184, 197, 216
AseI ATTAAT 1 cut(s) 1104
AsiGI ACCGGT 1 cut(s) 1002
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 951
AspLEI GCGC 1 cut(s) 1149
AspS9I GGNCC 5 cut(s) 116, 656, 840, 1097, 1466
AsuHPI GGTGA 4 cut(s) 470, 742, 1072, 1159
AvaI CYCGRG 1 cut(s) 1254
AvaII GGWCC 5 cut(s) 116, 656, 840, 1097, 1466
BaeGI GKGCMC 2 cut(s) 583, 874
BalI TGGCCA 1 cut(s) 1071
BanI GGYRCC 2 cut(s) 951, 995
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 886
Bbv12I GWGCWC 2 cut(s) 583, 874
BbvCI CCTCAGC 1 cut(s) 834
BbvI GCAGC 6 cut(s) 253, 281, 971, 1099, 1312, 1424
BccI CCATC 5 cut(s) 172, 374, 860, 1088, 1254
BceAI ACGGC 1 cut(s) 419
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 6 cut(s) 431, 645, 696, 972, 1275, 1460
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 6 cut(s) 267, 270, 960, 1113, 1301, 1413
BlsI GCNGC 6 cut(s) 268, 271, 961, 1114, 1302, 1414
BmcAI AGTACT 1 cut(s) 1422
Bme18I GGWCC 5 cut(s) 116, 656, 840, 1097, 1466
BmeT110I CYCGRG 1 cut(s) 1254
BmgT120I GGNCC 5 cut(s) 116, 656, 840, 1097, 1466
BmiI GGNNCC 4 cut(s) 657, 841, 953, 997
BmsI GCATC 3 cut(s) 340, 971, 1214
BpmI CTGGAG 1 cut(s) 1002
Bpu10I CCTNAGC 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 417, 726, 1170, 1255
BsaWI WCCGGW 2 cut(s) 194, 1002
Bsc4I CCNNNNNNNGG 2 cut(s) 511, 1260
Bse118I RCCGGY 1 cut(s) 1002
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 1327
BseDI CCNNGG 4 cut(s) 417, 726, 1170, 1255
BseGI GGATG 4 cut(s) 355, 385, 871, 1265
BseLI CCNNNNNNNGG 2 cut(s) 511, 1260
BseMI GCAATG 1 cut(s) 1327
BseMII CTCAG 3 cut(s) 825, 924, 957
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 2 cut(s) 695, 898
BseSI GKGCMC 2 cut(s) 583, 874
BseXI GCAGC 6 cut(s) 253, 281, 971, 1099, 1312, 1424
BsgI GTGCAG 1 cut(s) 978
Bsh1236I CGCG 2 cut(s) 527, 1131
BshFI GGCC 1 cut(s) 1071
BshNI GGYRCC 2 cut(s) 951, 995
BshTI ACCGGT 1 cut(s) 1002
BsiHKAI GWGCWC 2 cut(s) 583, 874
BsiHKCI CYCGRG 1 cut(s) 1254
BsiSI CCGG 2 cut(s) 195, 1003
BslFI GGGAC 2 cut(s) 669, 1237
BslI CCNNNNNNNGG 2 cut(s) 511, 1260
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 669, 1237
BsnI GGCC 1 cut(s) 1071
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 1254
Bsp1286I GDGCHC 3 cut(s) 583, 589, 874
Bsp143I GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
Bsp19I CCATGG 2 cut(s) 417, 726
BspANI GGCC 1 cut(s) 1071
BspCNI CTCAG 3 cut(s) 826, 923, 958
BspFNI CGCG 2 cut(s) 527, 1131
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 4 cut(s) 657, 841, 953, 997
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 2 cut(s) 1206, 1271
BspT107I GGYRCC 2 cut(s) 951, 995
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 1327
BsrFI RCCGGY 1 cut(s) 1002
BsrI ACTGG 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 1002
BssECI CCNNGG 4 cut(s) 417, 726, 1170, 1255
BssMI GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 2 cut(s) 417, 726
Bst2BI CACGAG 1 cut(s) 886
Bst4CI ACNGT 7 cut(s) 711, 917, 956, 1084, 1160, 1171, 1228
Bst6I CTCTTC 1 cut(s) 973
BstC8I GCNNGC 4 cut(s) 244, 499, 1117, 1121
BstDEI CTNAG 7 cut(s) 276, 344, 834, 893, 910, 966, 1358
BstDSI CCRYGG 3 cut(s) 417, 726, 1170
BstENI CCTNNNNNAGG 1 cut(s) 509
BstF5I GGATG 4 cut(s) 355, 385, 871, 1265
BstFNI CGCG 2 cut(s) 527, 1131
BstHHI GCGC 1 cut(s) 1149
BstKTI GATC 7 cut(s) 127, 211, 238, 652, 735, 1214, 1266
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
BstMWI GCNNNNNNNGC 2 cut(s) 220, 748
BstNSI RCATGY 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 2 cut(s) 583, 874
BstUI CGCG 2 cut(s) 527, 1131
BstV1I GCAGC 6 cut(s) 253, 281, 971, 1099, 1312, 1424
BsuRI GGCC 1 cut(s) 1071
BtgI CCRYGG 3 cut(s) 417, 726, 1170
BtsCI GGATG 4 cut(s) 355, 385, 871, 1265
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 405, 922, 1165
Cac8I GCNNGC 4 cut(s) 244, 499, 1117, 1121
CaiI CAGNNNCTG 1 cut(s) 965
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 1149
Cfr10I RCCGGY 1 cut(s) 1002
Cfr13I GGNCC 5 cut(s) 116, 656, 840, 1097, 1466
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 106, 952, 1421
CspAI ACCGGT 1 cut(s) 1002
CviQI GTAC 3 cut(s) 106, 952, 1421
DdeI CTNAG 7 cut(s) 276, 344, 834, 893, 910, 966, 1358
DpnI GATC 7 cut(s) 126, 210, 237, 651, 734, 1213, 1265
DpnII GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
DraI TTTAAA 1 cut(s) 762
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 973
EarI CTCTTC 1 cut(s) 973
Eco130I CCWWGG 2 cut(s) 417, 726
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 5 cut(s) 116, 656, 840, 1097, 1466
Eco57I CTGAAG 2 cut(s) 66, 501
Eco88I CYCGRG 1 cut(s) 1254
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 1163
EcoT14I CCWWGG 2 cut(s) 417, 726
EcoT22I ATGCAT 2 cut(s) 1207, 1441
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 417, 726
FaqI GGGAC 2 cut(s) 669, 1237
FauNDI CATATG 2 cut(s) 1435, 1441
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 6 cut(s) 267, 270, 960, 1113, 1301, 1413
FokI GGATG 4 cut(s) 362, 392, 878, 1272
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 6 cut(s) 267, 270, 960, 1113, 1301, 1413
FspBI CTAG 6 cut(s) 431, 645, 696, 972, 1275, 1460
FspI TGCGCA 1 cut(s) 1148
GlaI GCGC 1 cut(s) 1148
GluI GCNGC 6 cut(s) 267, 270, 960, 1113, 1301, 1413
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 1071
HapII CCGG 2 cut(s) 195, 1003
HgaI GACGC 1 cut(s) 533
HhaI GCGC 1 cut(s) 1149
Hin6I GCGC 1 cut(s) 1147
HinP1I GCGC 1 cut(s) 1147
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 3 cut(s) 221, 499, 639
HinfI GANTC 5 cut(s) 766, 897, 968, 1136, 1391
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 195, 1003
HphI GGTGA 4 cut(s) 470, 742, 1072, 1159
Hpy166II GTNNAC 6 cut(s) 444, 461, 541, 581, 872, 1080
Hpy188I TCNGA 7 cut(s) 46, 129, 208, 520, 913, 967, 1396
Hpy8I GTNNAC 6 cut(s) 444, 461, 541, 581, 872, 1080
Hpy99I CGWCG 2 cut(s) 185, 527
HpyAV CCTTC 3 cut(s) 314, 449, 505
HpyCH4III ACNGT 7 cut(s) 711, 917, 956, 1084, 1160, 1171, 1228
HpyCH4IV ACGT 3 cut(s) 104, 1329, 1405
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 748
HpyF3I CTNAG 7 cut(s) 276, 344, 834, 893, 910, 966, 1358
HpySE526I ACGT 3 cut(s) 104, 1329, 1405
HspAI GCGC 1 cut(s) 1147
KpnI GGTACC 1 cut(s) 955
Ksp22I TGATCA 1 cut(s) 124
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
LmnI GCTCC 2 cut(s) 625, 1021
Lsp1109I GCAGC 6 cut(s) 253, 281, 971, 1099, 1312, 1424
LweI GCATC 3 cut(s) 340, 971, 1214
MaeI CTAG 6 cut(s) 431, 645, 696, 972, 1275, 1460
MaeII ACGT 3 cut(s) 104, 1329, 1405
MaeIII GTNAC 4 cut(s) 307, 1084, 1125, 1453
MalI GATC 7 cut(s) 126, 210, 237, 651, 734, 1213, 1265
MboI GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
MboII GAAGA 7 cut(s) 38, 161, 396, 499, 541, 629, 990
MhlI GDGCHC 3 cut(s) 583, 589, 874
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 9 cut(s) 63, 248, 259, 465, 671, 702, 822, 1101, 1163
MluI ACGCGT 1 cut(s) 1129
MluNI TGGCCA 1 cut(s) 1071
MlyI GAGTC 3 cut(s) 775, 977, 1400
MmeI TCCRAC 2 cut(s) 125, 1210
Mox20I TGGCCA 1 cut(s) 1071
Mph1103I ATGCAT 2 cut(s) 1207, 1441
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 7 cut(s) 299, 438, 443, 761, 798, 825, 1104
Msp20I TGGCCA 1 cut(s) 1071
MspI CCGG 2 cut(s) 195, 1003
MvnI CGCG 2 cut(s) 527, 1131
MwoI GCNNNNNNNGC 2 cut(s) 220, 748
NcoI CCATGG 2 cut(s) 417, 726
NdeI CATATG 2 cut(s) 1435, 1441
NdeII GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
NlaIV GGNNCC 4 cut(s) 657, 841, 953, 997
NmuCI GTSAC 3 cut(s) 307, 1125, 1453
NsbI TGCGCA 1 cut(s) 1148
NsiI ATGCAT 2 cut(s) 1207, 1441
NspI RCATGY 1 cut(s) 329
PagI TCATGA 1 cut(s) 469
PciI ACATGT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 897, 1136
PinAI ACCGGT 1 cut(s) 1002
PkrI GCNGC 6 cut(s) 268, 271, 961, 1114, 1302, 1414
PleI GAGTC 3 cut(s) 774, 976, 1399
PpsI GAGTC 3 cut(s) 774, 976, 1399
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 1104
Psp1406I AACGTT 1 cut(s) 1329
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 4 cut(s) 657, 841, 953, 997
PspPI GGNCC 5 cut(s) 116, 656, 840, 1097, 1466
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 965
RsaI GTAC 3 cut(s) 107, 953, 1422
RsaNI GTAC 3 cut(s) 106, 952, 1421
SaqAI TTAA 7 cut(s) 299, 438, 443, 761, 798, 825, 1104
SatI GCNGC 6 cut(s) 267, 270, 960, 1113, 1301, 1413
Sau3AI GATC 7 cut(s) 124, 208, 235, 649, 732, 1211, 1263
Sau96I GGNCC 5 cut(s) 116, 656, 840, 1097, 1466
ScaI AGTACT 1 cut(s) 1422
SchI GAGTC 3 cut(s) 775, 977, 1400
SduI GDGCHC 3 cut(s) 583, 589, 874
SfaNI GCATC 3 cut(s) 340, 971, 1214
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 5 cut(s) 116, 656, 840, 1097, 1466
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 9 cut(s) 63, 248, 259, 465, 671, 702, 822, 1101, 1163
SspMI CTAG 6 cut(s) 431, 645, 696, 972, 1275, 1460
StyI CCWWGG 2 cut(s) 417, 726
TaaI ACNGT 7 cut(s) 711, 917, 956, 1084, 1160, 1171, 1228
TaiI ACGT 3 cut(s) 107, 1332, 1408
TaqI TCGA 2 cut(s) 976, 1389
TaqII GACCGA 1 cut(s) 673
TasI AATT 9 cut(s) 63, 248, 259, 465, 671, 702, 822, 1101, 1163
TatI WGTACW 1 cut(s) 1420
TfiI GAWTC 2 cut(s) 897, 1136
Tru1I TTAA 7 cut(s) 299, 438, 443, 761, 798, 825, 1104
Tru9I TTAA 7 cut(s) 299, 438, 443, 761, 798, 825, 1104
TscAI CASTG 3 cut(s) 405, 922, 1165
TseFI GTSAC 3 cut(s) 307, 1125, 1453
TseI GCWGC 6 cut(s) 266, 269, 959, 1112, 1300, 1412
Tsp45I GTSAC 3 cut(s) 307, 1125, 1453
TspDTI ATGAA 6 cut(s) 153, 162, 458, 468, 611, 1202
TspGWI ACGGA 3 cut(s) 784, 843, 890
TspRI CASTG 3 cut(s) 405, 922, 1165
VneI GTGCAC 2 cut(s) 579, 870
VpaK11BI GGWCC 5 cut(s) 116, 656, 840, 1097, 1466
VspI ATTAAT 1 cut(s) 1104
XagI CCTNNNNNAGG 1 cut(s) 509
XapI RAATTY 3 cut(s) 248, 259, 1163
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 6 cut(s) 431, 645, 696, 972, 1275, 1460
ZrmI AGTACT 1 cut(s) 1422
Zsp2I ATGCAT 2 cut(s) 1207, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.