AT3G56480

Myosin heavy chain-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005999
Physical Location & Seq
Reverse (-)
20936098 .. 20939631
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56480.1

Sequence Viewer

Length: 1473 bp
ATGACGAAAGTGTGTCCTGAAATAGAAGGGACATTATCTTTATCAGTGGTTCCAGTATCAGTAGATGTGAGCTTTGCTTCTGATCACTTTCCAACATATAAATTAGGACCTGATAATCAGATAGTAGAGGAACCAAAGGAAGATGAAAAAGGTCCATCTGTGAAGGAGACTGTCGAGAAAGAGAGCGAGTTGTTGTCTGATCAGCACAAGCGGCTTTCGGTCCGTGACCTCGCTAGTAAATTCGACAAGAATCTTGCTGCAGCTGTTAGTTTGGCTAATGAGGCTAAGTTAAGAGAGGTGGCTTCTTTGGAGGGACATGTTATGTTGAAGAAGCTAAGGGATGCTTTAGAATACATGAGAGGACGCACGGATGGGCAAAACAAACAGGATGTGGAGACAGCTATCTCCATGGTGGAAGCTCTAGCTGTGAAGTTAACTCAGAATGAAGGTGAATTGATTCAGGAGAAGTTTGAAGTGAAGAAACTAGGAAACTTCCTCAAGCAGACTTCAGAAGATGCAAAGAAACTGGTAAATCAAGAAAAGTCATTCTCTTGTGCTGAGATCGAAACTGCAAGGGCCGTTGTGCTGAGACTTGGAGAGGCTTTTGAAGAACAAGAACGGATTTCTGAAGCTTCTAGAGCTCAGGGGCCGGATGTGGAGAAATTGGTTGAGGAAGTTCAAGAGGCTAGGCAAATCAAACGGATGCATCACCCAACAAAGGTGATGGGCATGCAACACGAGCTTCATGGTTTAAGGAATCGAATCCAAGAGAAGTATATGAATTCTGTTAAACTTCATAAAGAGATAGCAATAATCAAGAGAGTTGAGGAATCCAAGTCTTGTCCATTTGTTCTTGAAGGCAAACAAAGTCTCGGCTCTTGCTTAAGAATCCGTGTCAATGCTCAAGACAATGCTCCAGATCTTTCCAACTGTTCTATTCAGTGGTATCGTGCAGCATGTGAAACTAGTCGCAGGGAAGCTATATCTGGTGCCATCCAATCGATGTATGCTCCAGAACCATTTGATGTTGGGAGGATATTACAGGCAGACATTCTTTCAAATGGTCAAAAGTTCACAGTTACAACCGATGATCCAGTTGATCCTGATTCTGGCTTGCCATCCCGCGTAGAGTCGCTGATGCGAAAGTCTAACAGTGAATTCAGTGTGGTTATATCGCAGATGAATGGACAAGACTATGCATCTCGATCGCACGTTTTTACCGTTGGAAAGACGAGGATAAAGCTGTCTCGAGGATGGATCACAAAGGCGAGAGAATTATATTCGACATCCATGCAGCTCTGTGGAGTTAGAGGCAATATTAAGGCTCCTACCAAGGCAGTGTTCTGGCAACCAAGAAAGAGTCTAACTTTCATACTAACCTTTGAGTCAGAACACGAACGTAACGCAGCCATAGCCCTTGCTCGAAAATACGCTTTCGATTGCAGTGTTACACTGCTTGGTCCAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007623 GO:0008150 GO:0016020 GO:0044464 GO:0048511 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

490

Amino Acids

54.92

Weight (kDa)

6.6

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAB-ABD PF16711 54 - 96 7.4e-23 Actin-binding domain of plant-specific actin-binding protein
SCAB_CC PF16712 100 - 269 8.3e-76 Coiled-coil regions of plant-specific actin-binding protein
SCAB-Ig PF16709 283 - 381 1.7e-42 Ig domain of plant-specific actin-binding protein
SCAB-PH PF17684 384 - 490 2.8e-52 PH domain of plant-specific actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 989
AccII CGCG 1 cut(s) 1125
AciI CCGC 2 cut(s) 211, 1123
AclWI GGATC 3 cut(s) 1085, 1094, 1265
AcsI RAATTY 3 cut(s) 239, 781, 1157
AcuI CTGAAG 2 cut(s) 492, 648
AfiI CCNNNNNNNGG 2 cut(s) 718, 1109
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 6 cut(s) 328, 473, 608, 680, 857, 1059
AhlI ACTAGT 1 cut(s) 965
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 5 cut(s) 161, 389, 583, 875, 1251
AlwI GGATC 3 cut(s) 1085, 1094, 1265
Ama87I CYCGRG 1 cut(s) 1248
AoxI GGCC 2 cut(s) 576, 647
ApeKI GCWGC 5 cut(s) 257, 260, 953, 1294, 1406
ApoI RAATTY 3 cut(s) 239, 781, 1157
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 6 cut(s) 107, 152, 220, 576, 647, 1460
AsuHPI GGTGA 3 cut(s) 461, 701, 733
AvaI CYCGRG 1 cut(s) 1248
AvaII GGWCC 4 cut(s) 107, 152, 220, 1460
BanI GGYRCC 1 cut(s) 989
BanII GRGCYC 1 cut(s) 643
BauI CACGAG 1 cut(s) 737
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 5 cut(s) 244, 272, 965, 1306, 1418
BccI CCATC 6 cut(s) 163, 365, 718, 1001, 1126, 1248
BceAI ACGGC 1 cut(s) 563
BcgI CGANNNNNNTGC 4 cut(s) 1188, 1222, 1273, 1307
BclI TGATCA 2 cut(s) 82, 199
BcoDI GTCTC 5 cut(s) 161, 389, 583, 875, 1251
BcuI ACTAGT 1 cut(s) 965
BfaI CTAG 6 cut(s) 234, 422, 485, 636, 687, 966
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 883
BglII AGATCT 1 cut(s) 919
BisI GCNGC 6 cut(s) 212, 258, 261, 954, 1295, 1407
BlsI GCNGC 6 cut(s) 213, 259, 262, 955, 1296, 1408
Bme18I GGWCC 4 cut(s) 107, 152, 220, 1460
BmeT110I CYCGRG 1 cut(s) 1248
BmgT120I GGNCC 6 cut(s) 107, 152, 220, 576, 647, 1460
BmiI GGNNCC 5 cut(s) 51, 132, 648, 991, 1326
BmsI GCATC 6 cut(s) 331, 505, 693, 715, 1128, 1208
BpmI CTGGAG 2 cut(s) 900, 996
Bpu10I CCTNAGC 2 cut(s) 335, 642
BpuEI CTTGAG 2 cut(s) 482, 888
Bsa29I ATCGAT 1 cut(s) 1001
BsaJI CCNNGG 2 cut(s) 408, 1332
Bsc4I CCNNNNNNNGG 2 cut(s) 718, 1109
Bse1I ACTGG 3 cut(s) 53, 531, 1094
BseCI ATCGAT 1 cut(s) 1001
BseDI CCNNGG 2 cut(s) 408, 1332
BseGI GGATG 9 cut(s) 346, 376, 394, 658, 708, 993, 1118, 1259, 1286
BseLI CCNNNNNNNGG 2 cut(s) 718, 1109
BseMII CTCAG 4 cut(s) 452, 549, 578, 656
BseNI ACTGG 3 cut(s) 53, 531, 1094
BseXI GCAGC 5 cut(s) 244, 272, 965, 1306, 1418
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 1125
Bsh1285I CGRYCG 1 cut(s) 1208
BshFI GGCC 2 cut(s) 578, 649
BshNI GGYRCC 1 cut(s) 989
BshVI ATCGAT 1 cut(s) 1001
BsiEI CGRYCG 1 cut(s) 1208
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 2 cut(s) 43, 327
BslI CCNNNNNNNGG 2 cut(s) 718, 1109
BsmAI GTCTC 5 cut(s) 161, 389, 583, 875, 1251
BsmFI GGGAC 2 cut(s) 43, 327
BsnI GGCC 2 cut(s) 578, 649
BsoBI CYCGRG 1 cut(s) 1248
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 2 cut(s) 211, 1123
BspANI GGCC 2 cut(s) 578, 649
BspCNI CTCAG 4 cut(s) 451, 550, 579, 655
BspDI ATCGAT 1 cut(s) 1001
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 5 cut(s) 51, 132, 648, 991, 1326
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 3 cut(s) 1085, 1094, 1265
BspT107I GGYRCC 1 cut(s) 989
BspTI CTTAAG 1 cut(s) 883
BsrI ACTGG 3 cut(s) 53, 531, 1094
BssECI CCNNGG 2 cut(s) 408, 1332
BssMI GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 2 cut(s) 408, 1332
Bst2BI CACGAG 1 cut(s) 737
Bst4CI ACNGT 5 cut(s) 172, 932, 1078, 1154, 1222
BstAFI CTTAAG 1 cut(s) 883
BstC8I GCNNGC 2 cut(s) 731, 1115
BstDEI CTNAG 6 cut(s) 285, 335, 438, 558, 587, 642
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 9 cut(s) 346, 376, 394, 658, 708, 993, 1118, 1259, 1286
BstFNI CGCG 1 cut(s) 1125
BstKTI GATC 8 cut(s) 85, 202, 564, 922, 1093, 1102, 1208, 1260
BstMAI GTCTC 5 cut(s) 161, 389, 583, 875, 1251
BstMBI GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
BstMCI CGRYCG 1 cut(s) 1208
BstMWI GCNNNNNNNGC 5 cut(s) 211, 281, 638, 739, 1412
BstNSI RCATGY 3 cut(s) 320, 733, 960
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 5 cut(s) 244, 272, 965, 1306, 1418
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
Bsu15I ATCGAT 1 cut(s) 1001
BsuRI GGCC 2 cut(s) 578, 649
BsuTUI ATCGAT 1 cut(s) 1001
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 9 cut(s) 346, 376, 394, 658, 708, 993, 1118, 1259, 1286
BtsI GCAGTG 3 cut(s) 1344, 1450, 1451
BtsIMutI CAGTG 7 cut(s) 51, 947, 1159, 1168, 1344, 1450, 1451
Cac8I GCNNGC 2 cut(s) 731, 1115
Cfr13I GGNCC 6 cut(s) 107, 152, 220, 576, 647, 1460
ClaI ATCGAT 1 cut(s) 1001
CpoI CGGWCCG 1 cut(s) 220
CseI GACGC 1 cut(s) 372
CspI CGGWCCG 1 cut(s) 220
CviAII CATG 7 cut(s) 317, 355, 409, 730, 746, 957, 1291
DdeI CTNAG 6 cut(s) 285, 335, 438, 558, 587, 642
DpnI GATC 8 cut(s) 84, 201, 563, 921, 1092, 1101, 1207, 1259
DpnII GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 408, 1332
Eco24I GRGCYC 1 cut(s) 643
Eco47I GGWCC 4 cut(s) 107, 152, 220, 1460
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 492, 648
Eco88I CYCGRG 1 cut(s) 1248
EcoICRI GAGCTC 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 2 cut(s) 781, 1157
EcoT14I CCWWGG 2 cut(s) 408, 1332
EcoT22I ATGCAT 2 cut(s) 708, 1201
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 2 cut(s) 408, 1332
FaeI CATG 7 cut(s) 320, 358, 412, 733, 749, 960, 1294
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 2 cut(s) 43, 327
FatI CATG 7 cut(s) 316, 354, 408, 729, 745, 956, 1290
FauI CCCGC 1 cut(s) 1130
FbaI TGATCA 2 cut(s) 82, 199
Fnu4HI GCNGC 6 cut(s) 212, 258, 261, 954, 1295, 1407
FokI GGATG 9 cut(s) 353, 383, 401, 665, 715, 980, 1105, 1266, 1273
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 6 cut(s) 212, 258, 261, 954, 1295, 1407
FspBI CTAG 6 cut(s) 234, 422, 485, 636, 687, 966
GluI GCNGC 6 cut(s) 212, 258, 261, 954, 1295, 1407
GsuI CTGGAG 2 cut(s) 900, 996
HaeIII GGCC 2 cut(s) 578, 649
HapII CCGG 1 cut(s) 650
HgaI GACGC 1 cut(s) 372
Hin1II CATG 7 cut(s) 320, 358, 412, 733, 749, 960, 1294
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 630
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 1 cut(s) 650
HphI GGTGA 3 cut(s) 461, 701, 733
Hpy166II GTNNAC 2 cut(s) 435, 1074
Hpy188I TCNGA 7 cut(s) 82, 120, 199, 441, 511, 628, 1390
Hpy8I GTNNAC 2 cut(s) 435, 1074
HpyAV CCTTC 4 cut(s) 20, 157, 440, 851
HpyCH4III ACNGT 5 cut(s) 172, 932, 1078, 1154, 1222
HpyCH4IV ACGT 2 cut(s) 1212, 1399
HpyCH4V TGCA 9 cut(s) 260, 518, 572, 706, 733, 953, 1199, 1294, 1443
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 281, 638, 739, 1412
HpyF3I CTNAG 6 cut(s) 285, 335, 438, 558, 587, 642
HpySE526I ACGT 2 cut(s) 1212, 1399
Hsp92II CATG 7 cut(s) 320, 358, 412, 733, 749, 960, 1294
Ksp22I TGATCA 2 cut(s) 82, 199
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
LmnI GCTCC 3 cut(s) 919, 1015, 1330
Lsp1109I GCAGC 5 cut(s) 244, 272, 965, 1306, 1418
LweI GCATC 6 cut(s) 331, 505, 693, 715, 1128, 1208
MaeI CTAG 6 cut(s) 234, 422, 485, 636, 687, 966
MaeII ACGT 2 cut(s) 1212, 1399
MaeIII GTNAC 4 cut(s) 224, 1078, 1400, 1447
MalI GATC 8 cut(s) 84, 201, 563, 921, 1092, 1101, 1207, 1259
MboI GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
MboII GAAGA 5 cut(s) 152, 340, 490, 524, 620
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 7 cut(s) 101, 239, 452, 662, 781, 1157, 1274
MlyI GAGTC 3 cut(s) 1139, 1369, 1394
MmeI TCCRAC 3 cut(s) 116, 951, 1204
Mph1103I ATGCAT 2 cut(s) 708, 1201
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 7 cut(s) 290, 434, 752, 789, 884, 1320, 1471
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 1 cut(s) 650
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 5 cut(s) 211, 281, 638, 739, 1412
NcoI CCATGG 1 cut(s) 408
NdeII GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
NlaIII CATG 7 cut(s) 320, 358, 412, 733, 749, 960, 1294
NlaIV GGNNCC 5 cut(s) 51, 132, 648, 991, 1326
NmeAIII GCCGAG 1 cut(s) 852
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 2 cut(s) 708, 1201
NspI RCATGY 3 cut(s) 320, 733, 960
PaeI GCATGC 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 1248
PciI ACATGT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 1218
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 7 cut(s) 250, 457, 757, 762, 830, 888, 1106
PkrI GCNGC 6 cut(s) 213, 259, 262, 955, 1296, 1408
Ple19I CGATCG 1 cut(s) 1208
PleI GAGTC 3 cut(s) 1138, 1368, 1393
PpsI GAGTC 3 cut(s) 1138, 1368, 1393
PpuMI RGGWCCY 1 cut(s) 107
PscI ACATGT 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 643
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 5 cut(s) 51, 132, 648, 991, 1326
PspPI GGNCC 6 cut(s) 107, 152, 220, 576, 647, 1460
PspPPI RGGWCCY 1 cut(s) 107
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 919
PvuI CGATCG 1 cut(s) 1208
PvuII CAGCTG 1 cut(s) 263
Rsr2I CGGWCCG 1 cut(s) 220
RsrII CGGWCCG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 643
SaqAI TTAA 7 cut(s) 290, 434, 752, 789, 884, 1320, 1471
SatI GCNGC 6 cut(s) 212, 258, 261, 954, 1295, 1407
Sau3AI GATC 8 cut(s) 82, 199, 561, 919, 1090, 1099, 1205, 1257
Sau96I GGNCC 6 cut(s) 107, 152, 220, 576, 647, 1460
SchI GAGTC 3 cut(s) 1139, 1369, 1394
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 6 cut(s) 331, 505, 693, 715, 1128, 1208
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 1248
SinI GGWCC 4 cut(s) 107, 152, 220, 1460
SlaI CTCGAG 1 cut(s) 1248
SmlI CTYRAG 4 cut(s) 497, 883, 903, 1248
SmoI CTYRAG 4 cut(s) 497, 883, 903, 1248
SpeI ACTAGT 1 cut(s) 965
SphI GCATGC 1 cut(s) 733
Sse9I AATT 7 cut(s) 101, 239, 452, 662, 781, 1157, 1274
SsiI CCGC 2 cut(s) 211, 1123
SspI AATATT 1 cut(s) 1318
SspMI CTAG 6 cut(s) 234, 422, 485, 636, 687, 966
SstI GAGCTC 1 cut(s) 643
StyI CCWWGG 2 cut(s) 408, 1332
TaaI ACNGT 5 cut(s) 172, 932, 1078, 1154, 1222
TaiI ACGT 2 cut(s) 1215, 1402
TaqII GACCGA 1 cut(s) 208
TasI AATT 7 cut(s) 101, 239, 452, 662, 781, 1157, 1274
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 7 cut(s) 250, 457, 757, 762, 830, 888, 1106
Tru1I TTAA 7 cut(s) 290, 434, 752, 789, 884, 1320, 1471
Tru9I TTAA 7 cut(s) 290, 434, 752, 789, 884, 1320, 1471
TscAI CASTG 7 cut(s) 51, 947, 1159, 1168, 1344, 1450, 1458
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 5 cut(s) 257, 260, 953, 1294, 1406
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 7 cut(s) 159, 459, 734, 785, 794, 1196, 1360
TspGWI ACGGA 5 cut(s) 212, 383, 634, 715, 881
TspRI CASTG 7 cut(s) 51, 947, 1159, 1168, 1344, 1450, 1458
Vha464I CTTAAG 1 cut(s) 883
VpaK11BI GGWCC 4 cut(s) 107, 152, 220, 1460
XapI RAATTY 3 cut(s) 239, 781, 1157
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 3 cut(s) 320, 733, 960
XhoI CTCGAG 1 cut(s) 1248
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 6 cut(s) 234, 422, 485, 636, 687, 966
Zsp2I ATGCAT 2 cut(s) 708, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.