Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005999

Physical Location & Seq

Genomic Coordinates Reverse (-)

5224261 .. 5235019

Gene Structure 10759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G027900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGACGAAGATAAATCCTGAATTTGAGGATCAGATCCCAACTGAGGGAGTTCTATCAGTGTCAGCTGATGTGAGTTTCATCTCTGATGGTTTTCCCAAGTATAAATTAGGACCTAATAATCAGATACTGGAAGAGCCGAAGGAGAATAATGATGGTCCGACCTTAAAAGAAGTAGTTGAACGGGAAACCACCCATTTGTCAGAACAGCATAAACGTCTCTCAGTTCGTGACCTTGCCAGTAAATTTGACAAGAACTTGGCTGCTGCTGCTAAATTGACCGAAGAGGCAAAACTTAGAGAAGTGGCTTCTTTGGAAGGACATGTTCTTTTGAAGAAGCTTAGAGATGCATTGGAACATTTGAGAGGGCGCTTAGCCGGGCGAAATAAAGAGGATGTGGAGAAAGCTATATCTATGGTGGAAGCTTTAGCAGTTAAGTTGACTCAAAAGGAAGGAGAACTGATTCAGGAGAAGTTTGAAGTGAAAAAGCTGGCCAGCTTTCTCAAACAGGCATCTGAAGATGCTAAAAAGTTGGTTAACCAAGAGAAATCTTTTGCTTGTGCTGAAATTGAAAGTGCGAGGGCAGTAGTACAGAGAATTGGAGAGGCTCTTGATGAGCAAGACACAACATCCGAAGCTTCTAAAAAACAGGATGTGGAGGAACTAGTTGAGGTGGTTCAGGAAGCTAGGAGAATTAAATTGATGCATCAGCCAAGCAAGGTAATGGACATGGAACATGAGCTTCGTGCATTACGAACTCAGATACGAGAGAAATGCATATTTTCAGTGAAGCTTCAGAAAGAGCTGGCAATGAGCAAGTGGGCAGAGGAAAACAAATCCTGTTTATATCTTATAGATGGTTCAGAAACTCTAGGTGCATATCTACGAATCCAACCTCGCTCAGAAAATGCCCCGCAACTTTCAAAATGTGCAATTCAATGGTATCGTGTTTCATCGGATGGCAGCAGGAATGAAGCTATTTCAGGTGCCAACAAATCAATTTATGCTCCAGAACCCTTTGATGTTGGCCGAATCCTACAAGCAGACATTATTTCCAATGACCAAAGAGTCACAGTGACGACCGCTTGTCCAATTGATCCTGCTGCAGGACTTGGAAGCTATGTAGATACACTTTTGAGAAAATCTAACACTGAATTTAATGTGGTTATTTCGAAAGTGAATGGACAAGATCATCCATCACATTCTGTTCATGCATTTCATGTTGGCAAGATGAGGATGAAGCTTAGTAGAGGATGGATTACAAAGTCTAGAGAAATATATTCCTCTTCAATGCAGCTATGCGGCGTTAGAGGTGATATTACTAATGCGGCAAAGGCAATGTTTTGGCAAGCAAGGAAGGGTCTCTCATTTGTATTGACATTTGAAACAGAGAGAGAAAGAAATGCAGCCATTATACTTGCCAGGAAATATGCTCTTGATTGCAATGTGATGCTTGCGGGACCAGATGATAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007623 GO:0008150 GO:0016020 GO:0044464 GO:0048511 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

492

Amino Acids

55.03

Weight (kDa)

7.15

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40820 AT2G40820 AT2G40820 AT2G40820 AT2G40820 AT3G56480
fragaria_vesca	FvH4_4g00550 FvH4_4g00550 FvH4_4g00550 FvH4_4g00550 FvH4_4g00550
malus_domestica	MD12G1093800.v1.1
prunus_persica	Prupe.7G027900_v2.0.a1 Prupe.7G027900_v2.0.a1 Prupe.7G027900_v2.0.a1 Prupe.7G027900_v2.0.a1
pyrus_communis	pycom12g07960
rosa_chinensis	RchiOBHm_Chr4g0386001
rosa_laevigata	RLG00000010183
rosa_multiflora	Rmu_sc0001388.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333770
rosa_rugosa	Rorug03G0306100
rosa_samantha	Rh4AG009900 Rh4BG006900 Rh4CG010500 Rh4DG008000
rosa_wichuraiana	Rw4G000150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	983
AciI	CCGC	5 cut(s)	911, 1080, 1299, 1325, 1454
AclWI	GGATC	3 cut(s)	28, 36, 1088
AcoI	YGGCCR	2 cut(s)	489, 1024
AcsI	RAATTY	3 cut(s)	20, 242, 1151
AcuI	CTGAAG	2 cut(s)	534, 776
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	43, 44, 1103
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	8 cut(s)	179, 331, 476, 569, 921, 935, 1287, 1382
AhdI	GACNNNNNGTC	1 cut(s)	1083
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	1418
Alw26I	GTCTC	2 cut(s)	221, 1364
AlwI	GGATC	3 cut(s)	28, 36, 1088
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	489, 1024
ApeKI	GCWGC	7 cut(s)	260, 263, 266, 960, 1100, 1291, 1403
ApoI	RAATTY	3 cut(s)	20, 242, 1151
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	110, 155, 1457
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	1322
AsuII	TTCGAA	1 cut(s)	1169
AvaII	GGWCC	3 cut(s)	110, 155, 1457
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	983
BbvI	GCAGC	7 cut(s)	247, 250, 253, 972, 1087, 1303, 1415
BccI	CCATC	6 cut(s)	80, 146, 848, 950, 1201, 1245
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BciT130I	CCWGG	1 cut(s)	1420
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	221, 1364
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	4 cut(s)	662, 684, 869, 1266
BfmI	CTRYAG	1 cut(s)	1101
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	9 cut(s)	261, 264, 267, 961, 1101, 1292, 1300, 1326, 1404
BlpI	GCTNAGC	1 cut(s)	370
BlsI	GCNGC	9 cut(s)	262, 265, 268, 962, 1102, 1293, 1301, 1327, 1405
Bme1390I	CCNGG	2 cut(s)	376, 1420
Bme18I	GGWCC	3 cut(s)	110, 155, 1457
BmeRI	GACNNNNNGTC	1 cut(s)	1083
BmgT120I	GGNCC	3 cut(s)	110, 155, 1457
BmiI	GGNNCC	2 cut(s)	985, 1458
BmrFI	CCNGG	2 cut(s)	376, 1420
BmsI	GCATC	6 cut(s)	334, 508, 518, 690, 712, 1437
BpmI	CTGGAG	1 cut(s)	990
Bpu1102I	GCTNAGC	1 cut(s)	370
Bpu14I	TTCGAA	1 cut(s)	1169
BpuMI	CCSGG	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	1364
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 44, 1103
Bse1I	ACTGG	2 cut(s)	132, 237
Bse3DI	GCAATG	3 cut(s)	813, 1341, 1447
BseBI	CCWGG	1 cut(s)	1420
BseGI	GGATG	7 cut(s)	397, 626, 655, 961, 1189, 1239, 1256
BseLI	CCNNNNNNNGG	3 cut(s)	43, 44, 1103
BseMI	GCAATG	3 cut(s)	813, 1341, 1447
BseMII	CTCAG	4 cut(s)	33, 234, 770, 912
BseNI	ACTGG	2 cut(s)	132, 237
BseXI	GCAGC	7 cut(s)	247, 250, 253, 972, 1087, 1303, 1415
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	2 cut(s)	491, 1026
BshNI	GGYRCC	1 cut(s)	983
BsiEI	CGRYCG	1 cut(s)	1080
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	1470
BslI	CCNNNNNNNGG	3 cut(s)	43, 44, 1103
BsmAI	GTCTC	2 cut(s)	221, 1364
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	1470
BsnI	GGCC	2 cut(s)	491, 1026
Bso31I	GGTCTC	1 cut(s)	1364
Bsp119I	TTCGAA	1 cut(s)	1169
Bsp143I	GATC	4 cut(s)	28, 33, 1093, 1186
Bsp1720I	GCTNAGC	1 cut(s)	370
BspACI	CCGC	5 cut(s)	911, 1080, 1299, 1325, 1454
BspANI	GGCC	2 cut(s)	491, 1026
BspCNI	CTCAG	4 cut(s)	34, 233, 769, 911
BspLI	GGNNCC	2 cut(s)	985, 1458
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	3 cut(s)	28, 36, 1088
BspQI	GCTCTTC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	1169
BspT107I	GGYRCC	1 cut(s)	983
BspTNI	GGTCTC	1 cut(s)	1364
BsrDI	GCAATG	3 cut(s)	813, 1341, 1447
BsrI	ACTGG	2 cut(s)	132, 237
BssMI	GATC	4 cut(s)	28, 33, 1093, 1186
Bst2UI	CCWGG	1 cut(s)	1420
Bst4CI	ACNGT	1 cut(s)	1072
Bst6I	CTCTTC	3 cut(s)	126, 276, 1288
BstBI	TTCGAA	1 cut(s)	1169
BstC8I	GCNNGC	5 cut(s)	489, 493, 804, 1347, 1452
BstDEI	CTNAG	8 cut(s)	42, 220, 293, 338, 370, 756, 898, 1241
BstENI	CCTNNNNNAGG	1 cut(s)	1101
BstF5I	GGATG	7 cut(s)	397, 626, 655, 961, 1189, 1239, 1256
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	4 cut(s)	31, 36, 1096, 1189
BstMAI	GTCTC	2 cut(s)	221, 1364
BstMBI	GATC	4 cut(s)	28, 33, 1093, 1186
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 1331
BstNI	CCWGG	1 cut(s)	1420
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	374, 1418
BstSFI	CTRYAG	1 cut(s)	1101
BstV1I	GCAGC	7 cut(s)	247, 250, 253, 972, 1087, 1303, 1415
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	491, 1026
BtsCI	GGATG	7 cut(s)	397, 626, 655, 961, 1189, 1239, 1256
BtsIMutI	CAGTG	4 cut(s)	63, 789, 1077, 1146
Cac8I	GCNNGC	5 cut(s)	489, 493, 804, 1347, 1452
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	110, 155, 1457
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	5 cut(s)	320, 727, 734, 1208, 1217
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	8 cut(s)	42, 220, 293, 338, 370, 756, 898, 1241
DpnI	GATC	4 cut(s)	30, 35, 1095, 1188
DpnII	GATC	4 cut(s)	28, 33, 1093, 1186
DrdI	GACNNNNNNGTC	1 cut(s)	1064
DriI	GACNNNNNGTC	1 cut(s)	1083
DseDI	GACNNNNNNGTC	1 cut(s)	1064
EaeI	YGGCCR	2 cut(s)	489, 1024
Eam1104I	CTCTTC	3 cut(s)	126, 276, 1288
Eam1105I	GACNNNNNGTC	1 cut(s)	1083
EarI	CTCTTC	3 cut(s)	126, 276, 1288
Eco31I	GGTCTC	1 cut(s)	1364
Eco47I	GGWCC	3 cut(s)	110, 155, 1457
Eco57I	CTGAAG	2 cut(s)	534, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	1101
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	1418
EcoT22I	ATGCAT	4 cut(s)	349, 705, 776, 1213
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	5 cut(s)	323, 730, 737, 1211, 1220
FaqI	GGGAC	1 cut(s)	1470
FatI	CATG	5 cut(s)	319, 726, 733, 1207, 1216
FauI	CCCGC	2 cut(s)	918, 1447
Fnu4HI	GCNGC	9 cut(s)	261, 264, 267, 961, 1101, 1292, 1300, 1326, 1404
FokI	GGATG	7 cut(s)	404, 613, 662, 968, 1176, 1246, 1263
Fsp4HI	GCNGC	9 cut(s)	261, 264, 267, 961, 1101, 1292, 1300, 1326, 1404
FspBI	CTAG	4 cut(s)	662, 684, 869, 1266
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	9 cut(s)	261, 264, 267, 961, 1101, 1292, 1300, 1326, 1404
GsuI	CTGGAG	1 cut(s)	990
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	491, 1026
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	323, 730, 737, 1211, 1220
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	2 cut(s)	438, 535
HindII	GTYRAC	2 cut(s)	438, 535
HindIII	AAGCTT	5 cut(s)	335, 420, 633, 788, 1238
HinfI	GANTC	5 cut(s)	439, 460, 885, 1029, 1065
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	1322
Hpy166II	GTNNAC	2 cut(s)	438, 535
Hpy188III	TCNNGA	8 cut(s)	17, 227, 464, 608, 677, 1007, 1266, 1433
Hpy8I	GTNNAC	2 cut(s)	438, 535
HpyAV	CCTTC	4 cut(s)	133, 308, 443, 1348
HpyCH4III	ACNGT	1 cut(s)	1072
HpyCH4IV	ACGT	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 1331
HpyF3I	CTNAG	8 cut(s)	42, 220, 293, 338, 370, 756, 898, 1241
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	323, 730, 737, 1211, 1220
HspAI	GCGC	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	28, 33, 1093, 1186
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	1009
Lsp1109I	GCAGC	7 cut(s)	247, 250, 253, 972, 1087, 1303, 1415
LweI	GCATC	6 cut(s)	334, 508, 518, 690, 712, 1437
MaeI	CTAG	4 cut(s)	662, 684, 869, 1266
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	227, 1066, 1072
MalI	GATC	4 cut(s)	30, 35, 1095, 1188
MboI	GATC	4 cut(s)	28, 33, 1093, 1186
MboII	GAAGA	6 cut(s)	19, 143, 293, 343, 527, 1275
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	433, 1074
MmeI	TCCRAC	2 cut(s)	182, 913
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	4 cut(s)	349, 705, 776, 1213
MroXI	GAANNNNTTC	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	5 cut(s)	164, 432, 534, 693, 1155
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	376, 1420
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	1 cut(s)	1420
MwoI	GCNNNNNNNGC	2 cut(s)	266, 1331
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	4 cut(s)	28, 33, 1093, 1186
NlaIII	CATG	5 cut(s)	323, 730, 737, 1211, 1220
NlaIV	GGNNCC	2 cut(s)	985, 1458
NmuCI	GTSAC	3 cut(s)	227, 1066, 1072
NsiI	ATGCAT	4 cut(s)	349, 705, 776, 1213
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	1169
PciI	ACATGT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	460, 885, 1029
PkrI	GCNGC	9 cut(s)	262, 265, 268, 962, 1102, 1293, 1301, 1327, 1405
PleI	GAGTC	2 cut(s)	433, 1073
PpsI	GAGTC	2 cut(s)	433, 1073
PpuMI	RGGWCCY	1 cut(s)	110
PscI	ACATGT	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	1418
PspGI	CCWGG	1 cut(s)	1418
PspN4I	GGNNCC	2 cut(s)	985, 1458
PspPI	GGNCC	3 cut(s)	110, 155, 1457
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	164, 432, 534, 693, 1155
SatI	GCNGC	9 cut(s)	261, 264, 267, 961, 1101, 1292, 1300, 1326, 1404
Sau3AI	GATC	4 cut(s)	28, 33, 1093, 1186
Sau96I	GGNCC	3 cut(s)	110, 155, 1457
SchI	GAGTC	2 cut(s)	433, 1074
ScrFI	CCNGG	2 cut(s)	376, 1420
SfaNI	GCATC	6 cut(s)	334, 508, 518, 690, 712, 1437
SfcI	CTRYAG	1 cut(s)	1101
SfuI	TTCGAA	1 cut(s)	1169
SinI	GGWCC	3 cut(s)	110, 155, 1457
SpeI	ACTAGT	1 cut(s)	661
SsiI	CCGC	5 cut(s)	911, 1080, 1299, 1325, 1454
SspMI	CTAG	4 cut(s)	662, 684, 869, 1266
StyD4I	CCNGG	2 cut(s)	374, 1418
TaaI	ACNGT	1 cut(s)	1072
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	1169
TaqII	GACCGA	1 cut(s)	293
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	2 cut(s)	1302, 1328
TfiI	GAWTC	3 cut(s)	460, 885, 1029
Tru1I	TTAA	5 cut(s)	164, 432, 534, 693, 1155
Tru9I	TTAA	5 cut(s)	164, 432, 534, 693, 1155
TscAI	CASTG	4 cut(s)	63, 789, 1077, 1153
TseFI	GTSAC	3 cut(s)	227, 1066, 1072
TseI	GCWGC	7 cut(s)	260, 263, 266, 960, 1100, 1291, 1403
Tsp45I	GTSAC	3 cut(s)	227, 1066, 1072
TspDTI	ATGAA	6 cut(s)	67, 939, 984, 1196, 1205, 1250
TspRI	CASTG	4 cut(s)	63, 789, 1077, 1153
VpaK11BI	GGWCC	3 cut(s)	110, 155, 1457
XagI	CCTNNNNNAGG	1 cut(s)	1101
XapI	RAATTY	3 cut(s)	20, 242, 1151
XbaI	TCTAGA	1 cut(s)	1265
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	4 cut(s)	662, 684, 869, 1266
Zsp2I	ATGCAT	4 cut(s)	349, 705, 776, 1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.