AT2G41460

DNA-(apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17285470 .. 17289023
3554 bp
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UTR
Exon/CDS
Intron
AT2G41460.3

Sequence Viewer

Length: 1611 bp
ATGAACAACGTTCTTCAGTTTGGTCTCCAGAGCTCCGCCATATATGTCGCCAAGTTTCTGGTGGTGCCTCTTAGGAGTTTGAGAGTTGGTTCATCTTTCGTTGGAGTTGGAGTGGGAACAAGAAGTTTCAACAAGAGGCTAATGTCAAATGCTACAGCTTTCTCTATCAACAACAGCAAGCGAAAGGAACTCAAGATACCAGGAGCAGCTATTGATCAGAATTGTCATCAGATGGGAAGTGATACTGATAGAGATGAAATGGGAACTCTTCAAGATGATCGAAAGGAAATTGAGGCGATGACTGTTCAAGAACTTAGATCCACGTTGAGGAAACTTGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGACAGCAATTTACCTGATCAAAAGGAAACTTCTTCGTCCACCCGTTCGGATAGTGTCACCATCAAAAGAAAGATCAGCAACAGGGAAGAGCCTACTGAAGATGAATGCACTAACTCTGAAGCTTATGACATTGAACACGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTTGAAAGCTAAAGTTTCTGCGAAAGCTATCGCGAAAGAACAGAAGTCATTGATGAGAACAGGTAAGCAGCAAATTCAGTCAAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAAAACTGAAGAAATTATCTCATCCCCGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAAGAAGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACCAGAGGGTACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTTGAAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTGCTTGCAGGAGACTAAACTCCAGGTGAAAGATGTTGAGGAAATTAAGAAAACTCTTATTGATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTGCAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGTCATGACACGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTATGTCCCTAATTCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGCAATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGATTTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATGGTGGCCGCAAAACCAACAAAGGATGGAGACTGGACTACTTCTTGGTGTCCCAATCAATTGCGGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATTGCCCCATTGGCCTTATTCTCAAGCTCTGA

Protein Analysis

536

Amino Acids

60.26

Weight (kDa)

9.11

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP PF02037 90 - 121 5.7e-09 SAP domain
Exo_endo_phos PF03372 272 - 520 5.5e-31 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 340, 815
AccB1I GGYRCC 3 cut(s) 64, 340, 815
AccI GTMKAC 1 cut(s) 554
AccII CGCG 1 cut(s) 599
AccIII TCCGGA 1 cut(s) 1178
AciI CCGC 4 cut(s) 36, 1328, 1474, 1529
AclI AACGTT 1 cut(s) 9
AclWI GGATC 3 cut(s) 312, 1217, 1230
AcoI YGGCCR 2 cut(s) 1471, 1530
AcsI RAATTY 3 cut(s) 639, 913, 1136
AcuI CTGAAG 3 cut(s) 510, 531, 714
AfaI GTAC 4 cut(s) 342, 738, 817, 1090
AfiI CCNNNNNNNGG 3 cut(s) 327, 350, 1178
AgsI TTSAA 7 cut(s) 130, 272, 308, 527, 571, 871, 1321
AjnI CCWGG 3 cut(s) 199, 948, 1429
Alw21I GWGCWC 2 cut(s) 35, 1300
Alw26I GTCTC 5 cut(s) 29, 787, 932, 1027, 1489
AlwI GGATC 3 cut(s) 312, 1217, 1230
Ama87I CYCGRG 1 cut(s) 712
Aor13HI TCCGGA 1 cut(s) 1178
AoxI GGCC 3 cut(s) 1471, 1530, 1591
ApeKI GCWGC 4 cut(s) 206, 634, 895, 1017
ApoI RAATTY 3 cut(s) 639, 913, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 1385, 1417
Asp718I GGTACC 2 cut(s) 340, 815
AspS9I GGNCC 1 cut(s) 1011
AsuHPI GGTGA 3 cut(s) 442, 964, 1295
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 1 cut(s) 1011
BanI GGYRCC 3 cut(s) 64, 340, 815
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 35, 1300
BbvCI CCTCAGC 1 cut(s) 1232
BbvI GCAGC 4 cut(s) 218, 646, 907, 1029
BccI CCATC 6 cut(s) 226, 461, 677, 983, 1178, 1485
BciT130I CCWGG 3 cut(s) 201, 950, 1431
BclI TGATCA 4 cut(s) 214, 409, 997, 1576
BcoDI GTCTC 5 cut(s) 29, 787, 932, 1027, 1489
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 4 cut(s) 153, 893, 1015, 1269
BglI GCCNNNNNGGC 2 cut(s) 1470, 1590
BisI GCNGC 6 cut(s) 207, 635, 896, 1018, 1474, 1530
BlsI GCNGC 6 cut(s) 208, 636, 897, 1019, 1475, 1531
Bme1390I CCNGG 3 cut(s) 201, 950, 1431
Bme18I GGWCC 1 cut(s) 1011
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 3 cut(s) 66, 342, 817
BmrFI CCNGG 3 cut(s) 201, 950, 1431
BplI GAGNNNNNCTC 2 cut(s) 869, 901
BpmI CTGGAG 3 cut(s) 11, 932, 1274
Bpu10I CCTNAGC 1 cut(s) 1232
BpuEI CTTGAG 2 cut(s) 176, 1586
BsaI GGTCTC 2 cut(s) 29, 787
BsaJI CCNNGG 2 cut(s) 728, 1465
BsaWI WCCGGW 1 cut(s) 1178
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 350, 1178
Bse1I ACTGG 3 cut(s) 770, 1096, 1503
Bse3DI GCAATG 1 cut(s) 1579
BseAI TCCGGA 1 cut(s) 1178
BseBI CCWGG 3 cut(s) 201, 950, 1431
BseDI CCNNGG 2 cut(s) 728, 1465
BseGI GGATG 4 cut(s) 707, 1426, 1496, 1551
BseLI CCNNNNNNNGG 3 cut(s) 327, 350, 1178
BseMI GCAATG 1 cut(s) 1579
BseMII CTCAG 5 cut(s) 549, 770, 848, 1089, 1246
BseNI ACTGG 3 cut(s) 770, 1096, 1503
BseXI GCAGC 4 cut(s) 218, 646, 907, 1029
Bsh1236I CGCG 1 cut(s) 599
BshFI GGCC 3 cut(s) 1473, 1532, 1593
BshNI GGYRCC 3 cut(s) 64, 340, 815
BsiHKAI GWGCWC 2 cut(s) 35, 1300
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 1 cut(s) 1179
BslFI GGGAC 2 cut(s) 1154, 1501
BslI CCNNNNNNNGG 3 cut(s) 327, 350, 1178
BsmAI GTCTC 5 cut(s) 29, 787, 932, 1027, 1489
BsmBI CGTCTC 1 cut(s) 1027
BsmFI GGGAC 2 cut(s) 1154, 1501
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 3 cut(s) 1473, 1532, 1593
Bso31I GGTCTC 2 cut(s) 29, 787
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 35, 1300
Bsp13I TCCGGA 1 cut(s) 1178
Bsp19I CCATGG 1 cut(s) 1465
Bsp68I TCGCGA 1 cut(s) 599
BspACI CCGC 4 cut(s) 36, 1328, 1474, 1529
BspANI GGCC 3 cut(s) 1473, 1532, 1593
BspCNI CTCAG 5 cut(s) 550, 769, 849, 1088, 1245
BspEI TCCGGA 1 cut(s) 1178
BspFNI CGCG 1 cut(s) 599
BspHI TCATGA 2 cut(s) 1105, 1300
BspLI GGNNCC 3 cut(s) 66, 342, 817
BspMAI CTGCAG 2 cut(s) 897, 1019
BspPI GGATC 3 cut(s) 312, 1217, 1230
BspQI GCTCTTC 1 cut(s) 474
BspT107I GGYRCC 3 cut(s) 64, 340, 815
BspTNI GGTCTC 2 cut(s) 29, 787
BsrDI GCAATG 1 cut(s) 1579
BsrI ACTGG 3 cut(s) 770, 1096, 1503
BssECI CCNNGG 2 cut(s) 728, 1465
BssT1I CCWWGG 1 cut(s) 1465
Bst2UI CCWGG 3 cut(s) 201, 950, 1431
Bst4CI ACNGT 6 cut(s) 304, 552, 729, 736, 1200, 1295
Bst6I CTCTTC 2 cut(s) 273, 474
BstC8I GCNNGC 3 cut(s) 179, 900, 932
BstDEI CTNAG 8 cut(s) 71, 314, 558, 756, 857, 1075, 1232, 1263
BstDSI CCRYGG 2 cut(s) 728, 1465
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 4 cut(s) 707, 1426, 1496, 1551
BstFNI CGCG 1 cut(s) 599
BstMAI GTCTC 5 cut(s) 29, 787, 932, 1027, 1489
BstMWI GCNNNNNNNGC 2 cut(s) 1470, 1590
BstNI CCWGG 3 cut(s) 201, 950, 1431
BstSCI CCNGG 3 cut(s) 199, 948, 1429
BstSFI CTRYAG 4 cut(s) 153, 893, 1015, 1269
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 4 cut(s) 218, 646, 907, 1029
BstX2I RGATCY 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 3 cut(s) 1473, 1532, 1593
BtgI CCRYGG 2 cut(s) 728, 1465
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 4 cut(s) 707, 1426, 1496, 1551
BtuMI TCGCGA 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 179, 900, 932
CciI TCATGA 2 cut(s) 1105, 1300
Cfr13I GGNCC 1 cut(s) 1011
CseI GACGC 2 cut(s) 363, 1009
Csp6I GTAC 4 cut(s) 341, 737, 816, 1089
CviAII CATG 4 cut(s) 1106, 1301, 1466, 1541
CviQI GTAC 4 cut(s) 341, 737, 816, 1089
DdeI CTNAG 8 cut(s) 71, 314, 558, 756, 857, 1075, 1232, 1263
EaeI YGGCCR 2 cut(s) 1471, 1530
Eam1104I CTCTTC 2 cut(s) 273, 474
EarI CTCTTC 2 cut(s) 273, 474
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 1465
Eco24I GRGCYC 1 cut(s) 35
Eco31I GGTCTC 2 cut(s) 29, 787
Eco32I GATATC 1 cut(s) 1564
Eco47I GGWCC 1 cut(s) 1011
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 3 cut(s) 510, 531, 714
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 3 cut(s) 199, 948, 1429
EcoRV GATATC 1 cut(s) 1564
EcoT14I CCWWGG 1 cut(s) 1465
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 1465
Esp3I CGTCTC 1 cut(s) 1027
FaeI CATG 4 cut(s) 1109, 1304, 1469, 1544
FaqI GGGAC 2 cut(s) 1154, 1501
FatI CATG 4 cut(s) 1105, 1300, 1465, 1540
FauI CCCGC 1 cut(s) 1321
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 4 cut(s) 214, 409, 997, 1576
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 6 cut(s) 207, 635, 896, 1018, 1474, 1530
FokI GGATG 4 cut(s) 694, 1413, 1503, 1538
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 6 cut(s) 207, 635, 896, 1018, 1474, 1530
FspBI CTAG 1 cut(s) 675
GluI GCNGC 6 cut(s) 207, 635, 896, 1018, 1474, 1530
GsuI CTGGAG 3 cut(s) 11, 932, 1274
HaeIII GGCC 3 cut(s) 1473, 1532, 1593
HapII CCGG 1 cut(s) 1179
HgaI GACGC 2 cut(s) 363, 1009
Hin1II CATG 4 cut(s) 1109, 1304, 1469, 1544
HindIII AAGCTT 2 cut(s) 513, 771
HinfI GANTC 3 cut(s) 715, 1142, 1544
HpaII CCGG 1 cut(s) 1179
HphI GGTGA 3 cut(s) 442, 964, 1295
Hpy166II GTNNAC 4 cut(s) 432, 555, 725, 732
Hpy188I TCNGA 6 cut(s) 219, 231, 442, 511, 759, 1610
Hpy8I GTNNAC 4 cut(s) 432, 555, 725, 732
HpyAV CCTTC 3 cut(s) 754, 1109, 1156
HpyCH4III ACNGT 6 cut(s) 304, 552, 729, 736, 1200, 1295
HpyCH4IV ACGT 2 cut(s) 9, 323
HpyCH4V TGCA 6 cut(s) 501, 895, 934, 1017, 1049, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 1470, 1590
HpyF3I CTNAG 8 cut(s) 71, 314, 558, 756, 857, 1075, 1232, 1263
HpySE526I ACGT 2 cut(s) 9, 323
Hsp92II CATG 4 cut(s) 1109, 1304, 1469, 1544
Kpn2I TCCGGA 1 cut(s) 1178
KpnI GGTACC 2 cut(s) 344, 819
Ksp22I TGATCA 4 cut(s) 214, 409, 997, 1576
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 38, 203
Lsp1109I GCAGC 4 cut(s) 218, 646, 907, 1029
MaeI CTAG 1 cut(s) 675
MaeII ACGT 2 cut(s) 9, 323
MaeIII GTNAC 3 cut(s) 448, 1126, 1442
MfeI CAATTG 1 cut(s) 1524
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 35, 1300
MlyI GAGTC 2 cut(s) 724, 1136
MmeI TCCRAC 2 cut(s) 82, 88
MroI TCCGGA 1 cut(s) 1178
MseI TTAA 3 cut(s) 849, 972, 1190
MslI CAYNNNNRTG 1 cut(s) 1431
MspI CCGG 1 cut(s) 1179
MspR9I CCNGG 3 cut(s) 201, 950, 1431
MunI CAATTG 1 cut(s) 1524
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 3 cut(s) 201, 950, 1431
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 2 cut(s) 1470, 1590
NcoI CCATGG 1 cut(s) 1465
NdeI CATATG 1 cut(s) 390
NlaIII CATG 4 cut(s) 1109, 1304, 1469, 1544
NlaIV GGNNCC 3 cut(s) 66, 342, 817
NmuCI GTSAC 1 cut(s) 448
NruI TCGCGA 1 cut(s) 599
PagI TCATGA 2 cut(s) 1105, 1300
PciSI GCTCTTC 1 cut(s) 474
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 1544
PkrI GCNGC 6 cut(s) 208, 636, 897, 1019, 1475, 1531
PleI GAGTC 2 cut(s) 723, 1136
PpsI GAGTC 2 cut(s) 723, 1136
Psp124BI GAGCTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 199, 948, 1429
PspGI CCWGG 3 cut(s) 199, 948, 1429
PspN4I GGNNCC 3 cut(s) 66, 342, 817
PspPI GGNCC 1 cut(s) 1011
PsrI GAACNNNNNNTAC 2 cut(s) 180, 212
PstI CTGCAG 2 cut(s) 897, 1019
PsuI RGATCY 1 cut(s) 317
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 4 cut(s) 342, 738, 817, 1090
RsaNI GTAC 4 cut(s) 341, 737, 816, 1089
RseI CAYNNNNRTG 1 cut(s) 1431
SacI GAGCTC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 3 cut(s) 849, 972, 1190
SatI GCNGC 6 cut(s) 207, 635, 896, 1018, 1474, 1530
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 2 cut(s) 724, 1136
ScrFI CCNGG 3 cut(s) 201, 950, 1431
SduI GDGCHC 2 cut(s) 35, 1300
SfcI CTRYAG 4 cut(s) 153, 893, 1015, 1269
SinI GGWCC 1 cut(s) 1011
SmiMI CAYNNNNRTG 1 cut(s) 1431
SmlI CTYRAG 2 cut(s) 191, 1601
SmoI CTYRAG 2 cut(s) 191, 1601
SsiI CCGC 4 cut(s) 36, 1328, 1474, 1529
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 199, 948, 1429
StyI CCWWGG 1 cut(s) 1465
TaaI ACNGT 6 cut(s) 304, 552, 729, 736, 1200, 1295
TaiI ACGT 2 cut(s) 12, 326
TaqI TCGA 5 cut(s) 280, 665, 1140, 1212, 1225
TatI WGTACW 1 cut(s) 736
TauI GCSGC 2 cut(s) 1476, 1532
TfiI GAWTC 1 cut(s) 1544
Tru1I TTAA 3 cut(s) 849, 972, 1190
Tru9I TTAA 3 cut(s) 849, 972, 1190
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 206, 634, 895, 1017
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 17, 81, 270, 377, 510, 1317
TspGWI ACGGA 3 cut(s) 546, 1075, 1127
VpaK11BI GGWCC 1 cut(s) 1011
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 3 cut(s) 639, 913, 1136
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 554
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.