FvH4_6g24881

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18847740 .. 18854019
6280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24881.t1

Sequence Viewer

Length: 1557 bp
ATGAACCAAATCCAATCACTGCAATTAGGGTTGAAGAGTTTATTCTCAATCTCACTAGTTGCTCCCAGGAATCTTCGAGTTAAAGCGACAATAGCTAGGTTGCCTCAACGACCCGTTTCCAGTTCCACAAAGAAGCCCGTGCTCAAAGGAGCAATGGGTTCAAACCCAATTCATCAGAAACCTGTTATAAAGGAGATTGAGAGTTTGAGAGATGATCTCTCTAAGATTGAGGCAATGACAGTTGAACAACTCAGGACAACACTGAGGAAGATAGGGGCCTCTGCCAAAGGTCGAAAATGCGAACTTGTGTCTTCCTTGAAGTGCTTTCTGGAAAATAAGATAGATGGTGAAAGTTCTCAGGTAATAGAAGAGCATGTATCCTCCACCATTTGTGTTGAAACTGTATCAGCCAACACCGAGACTGAAACTTTATCCAATGGAGACCAAGTTCAGAATGTCAACACTGTTTCGGATGTTCAGATACGCCAAGGGAATAAGCGGAGGTCATCATTTAAGAGTAAAACTGTTGAGGGTGATACTAAGGTTGTAAAGAAAGAGAAGCTATCGAATGAATCAGATGAAGTTTCAGTTGAGAACCTATCAAGGACAAGGAGGAAAGTATCTTCAAAAGCTGCAAGTATTGCTGTCATAACCGATGATAAGGTAGCTGAACCATGGACAGTTTTGGCGCACAAGAAACCTCAGAAAGATTGGATTCCTTATAATCCTAAAACCATGAGGCCCCCAGAGCTCACTAGGGAGACTAAATTTATGAAGCTTATGTCGTGGAACGTCAATGGTTTAAGGGCATTATTAAAGTTAGAGGGATTCTCTGCTTTGCAACTTGCCAAAAGAGAAGATTTTGATGTATTATGTCTGCAGGAGACCAAATTGCAGGAGAAGGATGTCGAAGATGTGAAGAGGTCTCTCATAGATGGCTATGAGAATAGCTTCTGGACATGTAGTGTTTCCAAGCTCGGTTACTCAGGAACTGCGATTATTTCCCGGGTAAAGCCACTTTCAGTTAGCTATGGACTTGGCATATCCGATCATGATAGTGAGGGCCGAATCGTAACAGTAGAGTTTGATTCATTTTACCTGATAAGTGGATATGTTCCTAATTCTGGAGATGGTTTGAGGAGACTGACATACAGGATTACAGAATGGGATCCATCTCTCAGTAATTACATGAAAGAGCTGGAAAAGTCGAAGCCTGTCATTTTAACTGGTGATCTGAACTGTGCGCATCAAGAGATAGACATTTATAACCCAGCTGGAAATATAAGAAGTGCTGGGTTTACAGATGAAGAAAGGCAATCCTTCAGGACAAACTTTTTATCCAGGGGATATGTGGATACTTTTAGAAGGCAACACCCTGGTGTTGTTGGCTACACATACTGGGGCTATCGACATGGTGGACGCAAATTTAACCGAGGGTGGCGGCTCGACTACTTCCTAGTCTCAGAATCTGTAGCTGGCAAGGTTCATGACTCGTATATTCTGCCTGATATTATTGGTAGCGATCATTGTCCTATAGGCCTTGTAATTAAGCTGTAG

Protein Analysis

519

Amino Acids

58.23

Weight (kDa)

9.19

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 261 - 509 4.1e-30 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 188, 723, 1266
Acc16I TGCGCA 1 cut(s) 1245
AciI CCGC 2 cut(s) 499, 1441
AclWI GGATC 2 cut(s) 1163, 1176
AcsI RAATTY 2 cut(s) 767, 1424
AcuI CTGAAG 1 cut(s) 1306
AfiI CCNNNNNNNGG 1 cut(s) 1124
AflIII ACRYGT 1 cut(s) 959
AgsI TTSAA 6 cut(s) 34, 162, 245, 319, 398, 627
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 3 cut(s) 65, 1340, 1375
AleI CACNNNNGTG 1 cut(s) 1377
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
Alw21I GWGCWC 2 cut(s) 144, 753
Alw26I GTCTC 7 cut(s) 413, 435, 755, 878, 930, 1135, 1465
AlwI GGATC 2 cut(s) 1163, 1176
AlwNI CAGNNNCTG 2 cut(s) 992, 1469
Ama87I CYCGRG 1 cut(s) 1005
AoxI GGCC 4 cut(s) 276, 740, 1063, 1537
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 2 cut(s) 767, 1424
Asp700I GAANNNNTTC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 691, 1246
AspS9I GGNCC 3 cut(s) 276, 741, 1063
AsuC2I CCSGG 2 cut(s) 1006, 1007
AsuHPI GGTGA 3 cut(s) 359, 545, 1241
AvaI CYCGRG 1 cut(s) 1005
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BamHI GGATCC 1 cut(s) 1168
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 2 cut(s) 144, 753
BbvI GCAGC 1 cut(s) 619
BccI CCATC 4 cut(s) 338, 929, 1124, 1180
BciT130I CCWGG 3 cut(s) 67, 1342, 1377
BciVI GTATCC 2 cut(s) 388, 1348
BcnI CCSGG 2 cut(s) 1006, 1007
BcoDI GTCTC 7 cut(s) 413, 435, 755, 878, 930, 1135, 1465
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 4 cut(s) 56, 96, 756, 1457
BfmI CTRYAG 4 cut(s) 878, 1470, 1533, 1553
BfuI GTATCC 2 cut(s) 388, 1348
BisI GCNGC 2 cut(s) 633, 1442
BlsI GCNGC 2 cut(s) 634, 1443
Bme1390I CCNGG 5 cut(s) 67, 1006, 1007, 1342, 1377
BmeT110I CYCGRG 1 cut(s) 1005
BmgT120I GGNCC 3 cut(s) 276, 741, 1063
BmiI GGNNCC 3 cut(s) 277, 743, 1170
BmrFI CCNGG 5 cut(s) 67, 1006, 1007, 1342, 1377
BmrI ACTGGG 1 cut(s) 1408
BmsI GCATC 1 cut(s) 1255
BmuI ACTGGG 1 cut(s) 1408
BpiI GAAGAC 1 cut(s) 303
BplI GAGNNNNNCTC 4 cut(s) 201, 233, 815, 847
BpmI CTGGAG 1 cut(s) 1146
BpuMI CCSGG 2 cut(s) 1006, 1007
BsaI GGTCTC 3 cut(s) 435, 878, 930
BsaJI CCNNGG 7 cut(s) 65, 487, 674, 1005, 1341, 1375, 1432
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 1124
Bse1I ACTGG 3 cut(s) 120, 1231, 1403
Bse3DI GCAATG 2 cut(s) 159, 240
BseBI CCWGG 3 cut(s) 67, 1342, 1377
BseDI CCNNGG 7 cut(s) 65, 487, 674, 1005, 1341, 1375, 1432
BseGI GGATG 2 cut(s) 478, 910
BseLI CCNNNNNNNGG 1 cut(s) 1124
BseMI GCAATG 2 cut(s) 159, 240
BseMII CTCAG 7 cut(s) 254, 265, 371, 716, 999, 1192, 1476
BseNI ACTGG 3 cut(s) 120, 1231, 1403
BseRI GAGGAG 1 cut(s) 1153
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 2 cut(s) 1270, 1292
BshFI GGCC 4 cut(s) 278, 742, 1065, 1539
BsiHKAI GWGCWC 2 cut(s) 144, 753
BsiHKCI CYCGRG 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 1006
BslI CCNNNNNNNGG 1 cut(s) 1124
BsmAI GTCTC 7 cut(s) 413, 435, 755, 878, 930, 1135, 1465
BsnI GGCC 4 cut(s) 278, 742, 1065, 1539
Bso31I GGTCTC 3 cut(s) 435, 878, 930
BsoBI CYCGRG 1 cut(s) 1005
Bsp1286I GDGCHC 2 cut(s) 144, 753
Bsp143I GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
Bsp19I CCATGG 1 cut(s) 674
BspACI CCGC 2 cut(s) 499, 1441
BspANI GGCC 4 cut(s) 278, 742, 1065, 1539
BspCNI CTCAG 7 cut(s) 255, 264, 370, 715, 998, 1191, 1475
BspHI TCATGA 2 cut(s) 1051, 1486
BspLI GGNNCC 3 cut(s) 277, 743, 1170
BspMAI CTGCAG 1 cut(s) 882
BspPI GGATC 2 cut(s) 1163, 1176
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 3 cut(s) 435, 878, 930
BsrDI GCAATG 2 cut(s) 159, 240
BsrI ACTGG 3 cut(s) 120, 1231, 1403
BssECI CCNNGG 7 cut(s) 65, 487, 674, 1005, 1341, 1375, 1432
BssMI GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
BssT1I CCWWGG 2 cut(s) 487, 674
Bst2UI CCWGG 3 cut(s) 67, 1342, 1377
Bst4CI ACNGT 7 cut(s) 241, 403, 466, 526, 682, 1078, 1241
Bst6I CTCTTC 3 cut(s) 29, 363, 914
BstAPI GCANNNNNTGC 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 1477
BstDEI CTNAG 9 cut(s) 222, 251, 263, 357, 540, 702, 985, 1178, 1462
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 478, 910
BstHHI GCGC 2 cut(s) 691, 1246
BstKTI GATC 5 cut(s) 217, 1051, 1171, 1234, 1525
BstMAI GTCTC 7 cut(s) 413, 435, 755, 878, 930, 1135, 1465
BstMBI GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
BstMWI GCNNNNNNNGC 3 cut(s) 92, 641, 748
BstNI CCWGG 3 cut(s) 67, 1342, 1377
BstNSI RCATGY 2 cut(s) 377, 963
BstSCI CCNGG 5 cut(s) 65, 1004, 1005, 1340, 1375
BstSFI CTRYAG 4 cut(s) 878, 1470, 1533, 1553
BstV1I GCAGC 1 cut(s) 619
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 1168
BsuI GTATCC 2 cut(s) 388, 1348
BsuRI GGCC 4 cut(s) 278, 742, 1065, 1539
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 2 cut(s) 478, 910
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 260, 462
Cac8I GCNNGC 1 cut(s) 1477
CaiI CAGNNNCTG 2 cut(s) 992, 1469
CciI TCATGA 2 cut(s) 1051, 1486
CfoI GCGC 2 cut(s) 691, 1246
Cfr13I GGNCC 3 cut(s) 276, 741, 1063
Cfr9I CCCGGG 1 cut(s) 1005
CseI GACGC 1 cut(s) 1428
CviAII CATG 8 cut(s) 374, 675, 736, 960, 1052, 1189, 1412, 1487
DdeI CTNAG 9 cut(s) 222, 251, 263, 357, 540, 702, 985, 1178, 1462
DpnI GATC 5 cut(s) 216, 1050, 1170, 1233, 1524
DpnII GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
Eam1104I CTCTTC 3 cut(s) 29, 363, 914
EarI CTCTTC 3 cut(s) 29, 363, 914
Ecl136II GAGCTC 1 cut(s) 751
Eco130I CCWWGG 2 cut(s) 487, 674
Eco147I AGGCCT 1 cut(s) 1539
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 3 cut(s) 435, 878, 930
Eco53kI GAGCTC 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 1306
Eco88I CYCGRG 1 cut(s) 1005
EcoICRI GAGCTC 1 cut(s) 751
EcoO109I RGGNCCY 2 cut(s) 276, 741
EcoRII CCWGG 3 cut(s) 65, 1340, 1375
EcoT14I CCWWGG 2 cut(s) 487, 674
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 2 cut(s) 487, 674
FaeI CATG 8 cut(s) 377, 678, 739, 963, 1055, 1192, 1415, 1490
FatI CATG 8 cut(s) 373, 674, 735, 959, 1051, 1188, 1411, 1486
Fnu4HI GCNGC 2 cut(s) 633, 1442
FokI GGATG 2 cut(s) 485, 917
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 633, 1442
FspAI RTGCGCAY 1 cut(s) 1245
FspBI CTAG 4 cut(s) 56, 96, 756, 1457
FspI TGCGCA 1 cut(s) 1245
GlaI GCGC 2 cut(s) 690, 1245
GluI GCNGC 2 cut(s) 633, 1442
GsaI CCCAGC 2 cut(s) 1274, 1296
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 4 cut(s) 278, 742, 1065, 1539
HapII CCGG 1 cut(s) 1006
HgaI GACGC 1 cut(s) 1428
HhaI GCGC 2 cut(s) 691, 1246
Hin1II CATG 8 cut(s) 377, 678, 739, 963, 1055, 1192, 1415, 1490
Hin6I GCGC 2 cut(s) 689, 1244
HinP1I GCGC 2 cut(s) 689, 1244
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 8 cut(s) 70, 572, 715, 828, 1068, 1088, 1466, 1490
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 3 cut(s) 359, 545, 1241
Hpy166II GTNNAC 3 cut(s) 460, 1299, 1418
Hpy188I TCNGA 9 cut(s) 177, 453, 472, 480, 577, 705, 1048, 1236, 1465
Hpy188III TCNNGA 9 cut(s) 253, 329, 955, 987, 1052, 1125, 1250, 1324, 1487
Hpy8I GTNNAC 3 cut(s) 460, 1299, 1418
HpyAV CCTTC 3 cut(s) 895, 1330, 1359
HpyCH4III ACNGT 7 cut(s) 241, 403, 466, 526, 682, 1078, 1241
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 5 cut(s) 22, 635, 841, 880, 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 641, 748
HpyF3I CTNAG 9 cut(s) 222, 251, 263, 357, 540, 702, 985, 1178, 1462
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 8 cut(s) 377, 678, 739, 963, 1055, 1192, 1415, 1490
HspAI GCGC 2 cut(s) 689, 1244
Kzo9I GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 67, 149
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 1 cut(s) 1255
MaeI CTAG 4 cut(s) 56, 96, 756, 1457
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 2 cut(s) 980, 1072
MalI GATC 5 cut(s) 216, 1050, 1170, 1233, 1524
MboI GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 2 cut(s) 144, 753
MluCI AATT 8 cut(s) 23, 168, 767, 890, 1120, 1183, 1424, 1545
MlyI GAGTC 1 cut(s) 1484
MroXI GAANNNNTTC 1 cut(s) 950
MseI TTAA 7 cut(s) 81, 513, 803, 815, 1223, 1428, 1548
MslI CAYNNNNRTG 2 cut(s) 1056, 1377
MspA1I CMGCKG 1 cut(s) 1274
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 5 cut(s) 67, 1006, 1007, 1342, 1377
MvaI CCWGG 3 cut(s) 67, 1342, 1377
MwoI GCNNNNNNNGC 3 cut(s) 92, 641, 748
NciI CCSGG 2 cut(s) 1006, 1007
NcoI CCATGG 1 cut(s) 674
NdeII GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
NlaIII CATG 8 cut(s) 377, 678, 739, 963, 1055, 1192, 1415, 1490
NlaIV GGNNCC 3 cut(s) 277, 743, 1170
NsbI TGCGCA 1 cut(s) 1245
NspI RCATGY 2 cut(s) 377, 963
OliI CACNNNNGTG 1 cut(s) 1377
PagI TCATGA 2 cut(s) 1051, 1486
PceI AGGCCT 1 cut(s) 1539
PciI ACATGT 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 7 cut(s) 70, 572, 715, 828, 1068, 1088, 1466
PkrI GCNGC 2 cut(s) 634, 1443
PleI GAGTC 1 cut(s) 1484
PpsI GAGTC 1 cut(s) 1484
PscI ACATGT 1 cut(s) 959
PsiI TTATAA 3 cut(s) 188, 723, 1266
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 3 cut(s) 65, 1340, 1375
PspFI CCCAGC 2 cut(s) 1270, 1292
PspGI CCWGG 3 cut(s) 65, 1340, 1375
PspN4I GGNNCC 3 cut(s) 277, 743, 1170
PspPI GGNCC 3 cut(s) 276, 741, 1063
PstI CTGCAG 1 cut(s) 882
PstNI CAGNNNCTG 2 cut(s) 992, 1469
PsuI RGATCY 1 cut(s) 1168
PvuII CAGCTG 1 cut(s) 1274
RseI CAYNNNNRTG 2 cut(s) 1056, 1377
SacI GAGCTC 1 cut(s) 753
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 7 cut(s) 81, 513, 803, 815, 1223, 1428, 1548
SatI GCNGC 2 cut(s) 633, 1442
Sau3AI GATC 5 cut(s) 214, 1048, 1168, 1231, 1522
Sau96I GGNCC 3 cut(s) 276, 741, 1063
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 5 cut(s) 67, 1006, 1007, 1342, 1377
SduI GDGCHC 2 cut(s) 144, 753
SfaNI GCATC 1 cut(s) 1255
SfcI CTRYAG 4 cut(s) 878, 1470, 1533, 1553
SmaI CCCGGG 1 cut(s) 1007
SmiMI CAYNNNNRTG 2 cut(s) 1056, 1377
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 8 cut(s) 23, 168, 767, 890, 1120, 1183, 1424, 1545
SseBI AGGCCT 1 cut(s) 1539
SsiI CCGC 2 cut(s) 499, 1441
SspMI CTAG 4 cut(s) 56, 96, 756, 1457
SstI GAGCTC 1 cut(s) 753
StuI AGGCCT 1 cut(s) 1539
StyD4I CCNGG 5 cut(s) 65, 1004, 1005, 1340, 1375
StyI CCWWGG 2 cut(s) 487, 674
TaaI ACNGT 7 cut(s) 241, 403, 466, 526, 682, 1078, 1241
TaiI ACGT 1 cut(s) 795
TaqI TCGA 7 cut(s) 76, 292, 566, 909, 1208, 1408, 1446
TasI AATT 8 cut(s) 23, 168, 767, 890, 1120, 1183, 1424, 1545
TauI GCSGC 1 cut(s) 1444
TfiI GAWTC 7 cut(s) 70, 572, 715, 828, 1068, 1088, 1466
Tru1I TTAA 7 cut(s) 81, 513, 803, 815, 1223, 1428, 1548
Tru9I TTAA 7 cut(s) 81, 513, 803, 815, 1223, 1428, 1548
TscAI CASTG 3 cut(s) 24, 267, 469
TseI GCWGC 1 cut(s) 632
TspDTI ATGAA 9 cut(s) 17, 161, 585, 594, 788, 1080, 1205, 1320, 1475
TspMI CCCGGG 1 cut(s) 1005
TspRI CASTG 3 cut(s) 24, 267, 469
XapI RAATTY 2 cut(s) 767, 1424
XceI RCATGY 2 cut(s) 377, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 1348
XmaI CCCGGG 1 cut(s) 1005
XmnI GAANNNNTTC 1 cut(s) 950
XspI CTAG 4 cut(s) 56, 96, 756, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.