Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003775

Physical Location & Seq

Genomic Coordinates Reverse (-)

30081868 .. 30090905

Gene Structure 9038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGAACCAAATCCAATCACTGCAATTAGGGTTCAAGAGTTTCCTCAGTCTCACCAGCTTTACAGTTGCTCCCAGGAATCTTAGAAGTGGAGTGCTTAGAGTAAAAGCAACAATAGCGAGACCCATTTCGAGTTCAACAAAGAAGCCCGTGCTCAAAGCAGCAATGGGAGCAAACCCCACTGTTATCAAGGAGATTGTGAGTTTGAAAGGTGACCTCTCTAAGATTGAGGCAATGACAGTTGAACAACTGAGGACAACACTGAGGAATATTGGGGCCTCTGCCAAAGGTCGAAAATGCGAACTTGTGTCTTCATTGAAGTGCTTTCTGGAAAATAAGATAGATGGTGAAAGTTCCCAGGTAATAGAACAGCAAATATCCTCCACCATTTGTGTTGAAACTGTATCAGCCAAAACCGAGACCGAACCTTTATCTAATGAAGACCAAATTCAGAATGTCAACACTGTTTCCGATGTTCAATTACGTCAACGGAATAAGCGAACGTCATCGTCTAAGAGTAAAACTGTCGATGGTGATGATAAGGTTGTAAAGAAAGAGAAGCTATTAATTGAATCAGATGAAGTTTCAGTTGGAAACCTCTCAAGGACAAGGAGGAAAGTATCTCCAAAAGCTGCGAGTATTACCGTCAAAACCGACGATAAGGTAGCTGAACCATGGACGGTTCTTGCGCACAAGAAACCTCAGAAAGATTGGATTCCTTATAATCCTAAAACCATGAGGCCCTCAGAGCTTACTAGGGAGACTAAATTTATGAAGCTTATGTCGTGGAATGTCAATGGTTTAAGGGCATTATTGAAGTTAGAGGGATTCTCTGCTTTGCAACTTGCTGAAAGAGAAGATTTTGATGTATTATGTCTGCAGGAGACCAAATTGCAGGAGAAGGATGTTGAAGATGTGAAGAGGTCTCTCATAGACGGCTATGAGAATAGCTTCTGGACATGTAGTGTTTCCAAGCTCGGTTACTCGGGAACTGCGATTATCTCCCGAGTAAAGCCACTTTCAGTTAGCTATGGACTTGGCATGTCAGATCATGATAGCGAGGGGCGGATTGTAACAGTAGAGTTTGATTCATTTTACCTGATAAGTGGATATGTTCCTAATTCTGGAGATGGTTTGAGGAGACTGACATACAGGATTACAGAATGGGATCCATCTCTCGGTAATTACATGAAAGAGCTGGAAAAGTCAAAGCCGGTAATTTTAACTGGTGATTTGAACTGTGCGCATCAAGAGATAGACATTTATAACCCAGCTGGAAATAGAAGAAGTGCTGGGTTTACAGATGAAGAACGGCATTCCTTCGGGACAAACTTTTTATCCAGAGGATTTGTGGATACATTTAGAAGGCAACACCCTGGTGTTGTTGGCTATACTTACTGGGGCTATCGACATGGTGCACGCAAATTTAACAGAGGGTGGCGGCTTGACTACTTCCTAGTCTCAGAATCTGTGGCTGACAAGGTGATCGAAGCTCCTTTACCAAAAGCACCACTTGATACTGGACTTGTTTGTAACTGGTTAGCTATAGAAGGTGTACAACCTGCAATTCCGGAAAATGCACCTATAGAAGGTTTGTCTCTTAAGCTTTCTCCATGCCAGCATCCTCACATACACATTGAACCTTATTTACTTGCCTTGTTGCGAAAAGATTGGGCAGACAACCATTGGGAACTTAGAGGCTTCACACCGAATCTGGTTGCTTCAATCTGCAAAAGGTGGATTATGCTAAGTTCATATATTCACTTTGTTTGGTCATGTCTAATAACACTCCAGTCACGACTTACAAAAACTTTGGTCAATGGATTTTTGGACCCAAAACGGAACTTGAATCAACACTGTGGTGTAATTCGAAGTTTAGCTGCTATAGGCCACAGGGTGGTTAGCCTTCTGATACTATCAAATCTGGAGTCATATCTGCGATTTCTTGAACCAGAACTGCTTCTTGGTAAGCAAAAGAATGAGATAAAAGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004528 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006289 GO:0006355 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033683 GO:0034641 GO:0042578 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos SAP

Protein Analysis

664

Amino Acids

74.69

Weight (kDa)

9.17

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	260 - 501	4.3e-29	Endonuclease/Exonuclease/phosphatase family
TAF6_C	PF07571	557 - 641	1.2e-10	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41460 AT2G41460 AT2G41460 AT2G41460
fragaria_vesca	FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881
malus_domestica	MD12G1086000.v1.1
prunus_persica	Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1
pyrus_communis	pycom12g07320
rosa_chinensis	RchiOBHm_Chr3g0484531
rosa_laevigata	RLG00000023226
rosa_multiflora	Rmu_sc0012967.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397730
rosa_rugosa	Rorug03G0211400 Rorug03G0211500 Rorug03G0211500
rosa_samantha	Rh3AG262000 Rh3BG297100 Rh3CG294400 Rh3DG290700
rosa_wichuraiana	Rw3G023480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	720, 1263
Acc16I	TGCGCA	2 cut(s)	687, 1242
Acc36I	ACCTGC	1 cut(s)	1567
AccB7I	CCANNNNNTGG	1 cut(s)	1894
AccIII	TCCGGA	1 cut(s)	1567
AciI	CCGC	2 cut(s)	1063, 1438
AclWI	GGATC	2 cut(s)	1160, 1173
AcsI	RAATTY	3 cut(s)	444, 764, 1421
AdeI	CACNNNGTG	1 cut(s)	1894
AfaI	GTAC	1 cut(s)	1554
AfiI	CCNNNNNNNGG	4 cut(s)	1121, 1175, 1586, 1894
AflII	CTTAAG	1 cut(s)	1598
AflIII	ACRYGT	1 cut(s)	956
AjnI	CCWGG	3 cut(s)	71, 354, 1372
AjuI	GAANNNNNNNTTGG	4 cut(s)	570, 602, 1944, 1976
AleI	CACNNNNGTG	2 cut(s)	1374, 1857
Alw21I	GWGCWC	2 cut(s)	153, 1417
Alw26I	GTCTC	9 cut(s)	53, 112, 410, 752, 875, 927, 1132, 1462, 1599
Alw44I	GTGCAC	1 cut(s)	1413
AlwI	GGATC	2 cut(s)	1160, 1173
AlwNI	CAGNNNCTG	1 cut(s)	1466
Ama87I	CYCGRG	2 cut(s)	982, 1002
Aor13HI	TCCGGA	1 cut(s)	1567
AoxI	GGCC	3 cut(s)	273, 737, 1885
ApaLI	GTGCAC	1 cut(s)	1413
ApeKI	GCWGC	3 cut(s)	158, 629, 1877
ApoI	RAATTY	3 cut(s)	444, 764, 1421
ArsI	GACNNNNNNTTYG	2 cut(s)	1910, 1942
AseI	ATTAAT	1 cut(s)	563
Asp700I	GAANNNNTTC	2 cut(s)	947, 1956
AspLEI	GCGC	2 cut(s)	688, 1243
AspS9I	GGNCC	3 cut(s)	273, 738, 1828
AsuHPI	GGTGA	6 cut(s)	43, 221, 356, 542, 1238, 1492
AsuII	TTCGAA	1 cut(s)	1867
AvaI	CYCGRG	2 cut(s)	982, 1002
AvaII	GGWCC	1 cut(s)	1828
BaeGI	GKGCMC	1 cut(s)	1417
BamHI	GGATCC	1 cut(s)	1165
BarI	GAAGNNNNNNTAC	2 cut(s)	1479, 1511
BbsI	GAAGAC	2 cut(s)	300, 444
Bbv12I	GWGCWC	2 cut(s)	153, 1417
BbvI	GCAGC	3 cut(s)	170, 616, 1864
BccI	CCATC	4 cut(s)	335, 521, 1121, 1177
BceAI	ACGGC	2 cut(s)	949, 1325
BciT130I	CCWGG	3 cut(s)	73, 356, 1374
BciVI	GTATCC	1 cut(s)	1345
BcoDI	GTCTC	9 cut(s)	53, 112, 410, 752, 875, 927, 1132, 1462, 1599
BfaI	CTAG	2 cut(s)	753, 1454
BfmI	CTRYAG	4 cut(s)	875, 1542, 1581, 1881
BfrI	CTTAAG	1 cut(s)	1598
BfuAI	ACCTGC	1 cut(s)	1567
BfuI	GTATCC	1 cut(s)	1345
BisI	GCNGC	4 cut(s)	159, 630, 1439, 1878
BlsI	GCNGC	4 cut(s)	160, 631, 1440, 1879
Bme1390I	CCNGG	3 cut(s)	73, 356, 1374
Bme18I	GGWCC	1 cut(s)	1828
BmeT110I	CYCGRG	2 cut(s)	982, 1002
BmgT120I	GGNCC	3 cut(s)	273, 738, 1828
BmiI	GGNNCC	3 cut(s)	274, 1167, 1830
BmrFI	CCNGG	3 cut(s)	73, 356, 1374
BmrI	ACTGGG	1 cut(s)	1405
BmsI	GCATC	2 cut(s)	1252, 1627
BmuI	ACTGGG	1 cut(s)	1405
BpiI	GAAGAC	2 cut(s)	300, 444
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BpmI	CTGGAG	3 cut(s)	1143, 1772, 1943
Bpu14I	TTCGAA	1 cut(s)	1867
BpuEI	CTTGAG	1 cut(s)	583
BsaI	GGTCTC	4 cut(s)	112, 410, 875, 927
BsaJI	CCNNGG	4 cut(s)	71, 354, 671, 1372
BsaWI	WCCGGW	1 cut(s)	1567
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	4 cut(s)	1121, 1175, 1586, 1894
Bse118I	RCCGGY	1 cut(s)	1210
Bse1I	ACTGG	5 cut(s)	1228, 1400, 1522, 1538, 1789
Bse3DI	GCAATG	2 cut(s)	168, 237
BseAI	TCCGGA	1 cut(s)	1567
BseBI	CCWGG	3 cut(s)	73, 356, 1374
BseDI	CCNNGG	4 cut(s)	71, 354, 671, 1372
BseGI	GGATG	2 cut(s)	907, 1618
BseLI	CCNNNNNNNGG	4 cut(s)	1121, 1175, 1586, 1894
BseMI	GCAATG	2 cut(s)	168, 237
BseMII	CTCAG	6 cut(s)	58, 239, 251, 713, 756, 1473
BseNI	ACTGG	5 cut(s)	1228, 1400, 1522, 1538, 1789
BseRI	GAGGAG	1 cut(s)	1150
BseSI	GKGCMC	1 cut(s)	1417
BseXI	GCAGC	3 cut(s)	170, 616, 1864
BseYI	CCCAGC	2 cut(s)	1267, 1289
BshFI	GGCC	3 cut(s)	275, 739, 1887
BsiHKAI	GWGCWC	2 cut(s)	153, 1417
BsiHKCI	CYCGRG	2 cut(s)	982, 1002
BsiSI	CCGG	2 cut(s)	1211, 1568
BslFI	GGGAC	1 cut(s)	1336
BslI	CCNNNNNNNGG	4 cut(s)	1121, 1175, 1586, 1894
BsmAI	GTCTC	9 cut(s)	53, 112, 410, 752, 875, 927, 1132, 1462, 1599
BsmFI	GGGAC	1 cut(s)	1336
BsmI	GAATGC	1 cut(s)	1312
BsnI	GGCC	3 cut(s)	275, 739, 1887
Bso31I	GGTCTC	4 cut(s)	112, 410, 875, 927
BsoBI	CYCGRG	2 cut(s)	982, 1002
Bsp119I	TTCGAA	1 cut(s)	1867
Bsp1286I	GDGCHC	2 cut(s)	153, 1417
Bsp13I	TCCGGA	1 cut(s)	1567
Bsp1407I	TGTACA	1 cut(s)	1552
Bsp143I	GATC	3 cut(s)	1045, 1165, 1482
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	2 cut(s)	1063, 1438
BspANI	GGCC	3 cut(s)	275, 739, 1887
BspCNI	CTCAG	6 cut(s)	57, 240, 252, 712, 755, 1472
BspEI	TCCGGA	1 cut(s)	1567
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	3 cut(s)	274, 1167, 1830
BspMAI	CTGCAG	1 cut(s)	879
BspMI	ACCTGC	1 cut(s)	1567
BspPI	GGATC	2 cut(s)	1160, 1173
BspT104I	TTCGAA	1 cut(s)	1867
BspTI	CTTAAG	1 cut(s)	1598
BspTNI	GGTCTC	4 cut(s)	112, 410, 875, 927
BsrDI	GCAATG	2 cut(s)	168, 237
BsrFI	RCCGGY	1 cut(s)	1210
BsrGI	TGTACA	1 cut(s)	1552
BsrI	ACTGG	5 cut(s)	1228, 1400, 1522, 1538, 1789
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	4 cut(s)	71, 354, 671, 1372
BssMI	GATC	3 cut(s)	1045, 1165, 1482
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	3 cut(s)	73, 356, 1374
Bst6I	CTCTTC	1 cut(s)	911
BstAFI	CTTAAG	1 cut(s)	1598
BstAUI	TGTACA	1 cut(s)	1552
BstBI	TTCGAA	1 cut(s)	1867
BstC8I	GCNNGC	2 cut(s)	1417, 1616
BstDSI	CCRYGG	1 cut(s)	671
BstEII	GGTNACC	1 cut(s)	209
BstENI	CCTNNNNNAGG	1 cut(s)	1584
BstF5I	GGATG	2 cut(s)	907, 1618
BstHHI	GCGC	2 cut(s)	688, 1243
BstKTI	GATC	3 cut(s)	1048, 1168, 1485
BstMAI	GTCTC	9 cut(s)	53, 112, 410, 752, 875, 927, 1132, 1462, 1599
BstMBI	GATC	3 cut(s)	1045, 1165, 1482
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 167, 745
BstNI	CCWGG	3 cut(s)	73, 356, 1374
BstNSI	RCATGY	2 cut(s)	960, 1042
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	71, 354, 1372
BstSFI	CTRYAG	4 cut(s)	875, 1542, 1581, 1881
BstSLI	GKGCMC	1 cut(s)	1417
BstV1I	GCAGC	3 cut(s)	170, 616, 1864
BstV2I	GAAGAC	2 cut(s)	300, 444
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
BsuI	GTATCC	1 cut(s)	1345
BsuRI	GGCC	3 cut(s)	275, 739, 1887
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	907, 1618
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	5 cut(s)	17, 177, 257, 459, 1852
BveI	ACCTGC	1 cut(s)	1567
Cac8I	GCNNGC	2 cut(s)	1417, 1616
CaiI	CAGNNNCTG	1 cut(s)	1466
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	2 cut(s)	688, 1243
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr13I	GGNCC	3 cut(s)	273, 738, 1828
Csp6I	GTAC	1 cut(s)	1553
CviQI	GTAC	1 cut(s)	1553
DpnI	GATC	3 cut(s)	1047, 1167, 1484
DpnII	GATC	3 cut(s)	1045, 1165, 1482
DraIII	CACNNNGTG	1 cut(s)	1894
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
EciI	GGCGGA	1 cut(s)	1078
Eco130I	CCWWGG	1 cut(s)	671
Eco31I	GGTCTC	4 cut(s)	112, 410, 875, 927
Eco47I	GGWCC	1 cut(s)	1828
Eco88I	CYCGRG	2 cut(s)	982, 1002
Eco91I	GGTNACC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	1584
EcoO109I	RGGNCCY	2 cut(s)	273, 738
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	71, 354, 1372
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	1 cut(s)	1336
Fnu4HI	GCNGC	4 cut(s)	159, 630, 1439, 1878
FokI	GGATG	2 cut(s)	914, 1605
Fsp4HI	GCNGC	4 cut(s)	159, 630, 1439, 1878
FspAI	RTGCGCAY	1 cut(s)	1242
FspBI	CTAG	2 cut(s)	753, 1454
FspI	TGCGCA	2 cut(s)	687, 1242
GlaI	GCGC	2 cut(s)	687, 1242
GluI	GCNGC	4 cut(s)	159, 630, 1439, 1878
GsaI	CCCAGC	2 cut(s)	1271, 1293
GsuI	CTGGAG	3 cut(s)	1143, 1772, 1943
HaeIII	GGCC	3 cut(s)	275, 739, 1887
HapII	CCGG	2 cut(s)	1211, 1568
HhaI	GCGC	2 cut(s)	688, 1243
Hin6I	GCGC	2 cut(s)	686, 1241
HinP1I	GCGC	2 cut(s)	686, 1241
HincII	GTYRAC	2 cut(s)	457, 485
HindII	GTYRAC	2 cut(s)	457, 485
HindIII	AAGCTT	2 cut(s)	773, 1601
HinfI	GANTC	9 cut(s)	76, 569, 712, 825, 1085, 1463, 1708, 1846, 1925
HpaII	CCGG	2 cut(s)	1211, 1568
HphI	GGTGA	6 cut(s)	43, 221, 356, 542, 1238, 1492
Hpy166II	GTNNAC	5 cut(s)	457, 485, 1296, 1415, 1553
Hpy188I	TCNGA	8 cut(s)	450, 469, 574, 702, 745, 1045, 1462, 1908
Hpy8I	GTNNAC	5 cut(s)	457, 485, 1296, 1415, 1553
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	6 cut(s)	892, 1327, 1356, 1541, 1580, 1913
HpyCH4IV	ACGT	2 cut(s)	481, 500
HpyCH4V	TGCA	8 cut(s)	22, 838, 877, 892, 1415, 1562, 1577, 1728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 167, 745
HpySE526I	ACGT	2 cut(s)	481, 500
HspAI	GCGC	2 cut(s)	686, 1241
Kpn2I	TCCGGA	1 cut(s)	1567
Kzo9I	GATC	3 cut(s)	1045, 1165, 1482
LmnI	GCTCC	3 cut(s)	73, 167, 1495
Lsp1109I	GCAGC	3 cut(s)	170, 616, 1864
LweI	GCATC	2 cut(s)	1252, 1627
MaeI	CTAG	2 cut(s)	753, 1454
MaeII	ACGT	2 cut(s)	481, 500
MaeIII	GTNAC	5 cut(s)	209, 977, 1069, 1529, 1791
MalI	GATC	3 cut(s)	1047, 1167, 1484
MboI	GATC	3 cut(s)	1045, 1165, 1482
MboII	GAAGA	7 cut(s)	300, 449, 866, 920, 928, 1293, 1316
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	2 cut(s)	153, 1417
MlyI	GAGTC	1 cut(s)	1934
MmeI	TCCRAC	1 cut(s)	568
MroI	TCCGGA	1 cut(s)	1567
MroXI	GAANNNNTTC	2 cut(s)	947, 1956
MseI	TTAA	5 cut(s)	563, 800, 1220, 1425, 1599
MslI	CAYNNNNRTG	3 cut(s)	316, 1374, 1857
MspA1I	CMGCKG	1 cut(s)	1271
MspCI	CTTAAG	1 cut(s)	1598
MspI	CCGG	2 cut(s)	1211, 1568
MspR9I	CCNGG	3 cut(s)	73, 356, 1374
Mva1269I	GAATGC	1 cut(s)	1312
MvaI	CCWGG	3 cut(s)	73, 356, 1374
MwoI	GCNNNNNNNGC	3 cut(s)	113, 167, 745
NcoI	CCATGG	1 cut(s)	671
NdeII	GATC	3 cut(s)	1045, 1165, 1482
NlaIV	GGNNCC	3 cut(s)	274, 1167, 1830
NmuCI	GTSAC	2 cut(s)	209, 1791
NsbI	TGCGCA	2 cut(s)	687, 1242
NspI	RCATGY	2 cut(s)	960, 1042
NspV	TTCGAA	1 cut(s)	1867
OliI	CACNNNNGTG	2 cut(s)	1374, 1857
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	956
PcsI	WCGNNNNNNNCGW	2 cut(s)	493, 989
PctI	GAATGC	1 cut(s)	1312
PdmI	GAANNNNTTC	2 cut(s)	947, 1956
PfeI	GAWTC	8 cut(s)	76, 569, 712, 825, 1085, 1463, 1708, 1846
PflMI	CCANNNNNTGG	1 cut(s)	1894
PkrI	GCNGC	4 cut(s)	160, 631, 1440, 1879
PleI	GAGTC	1 cut(s)	1933
PpsI	GAGTC	1 cut(s)	1933
PscI	ACATGT	1 cut(s)	956
PshBI	ATTAAT	1 cut(s)	563
PsiI	TTATAA	2 cut(s)	720, 1263
Psp6I	CCWGG	3 cut(s)	71, 354, 1372
PspEI	GGTNACC	1 cut(s)	209
PspFI	CCCAGC	2 cut(s)	1267, 1289
PspGI	CCWGG	3 cut(s)	71, 354, 1372
PspN4I	GGNNCC	3 cut(s)	274, 1167, 1830
PspPI	GGNCC	3 cut(s)	273, 738, 1828
PsrI	GAACNNNNNNTAC	2 cut(s)	1629, 1661
PstI	CTGCAG	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	1466
PsuI	RGATCY	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	1 cut(s)	1554
RsaNI	GTAC	1 cut(s)	1553
RseI	CAYNNNNRTG	3 cut(s)	316, 1374, 1857
SaqAI	TTAA	5 cut(s)	563, 800, 1220, 1425, 1599
SatI	GCNGC	4 cut(s)	159, 630, 1439, 1878
Sau3AI	GATC	3 cut(s)	1045, 1165, 1482
Sau96I	GGNCC	3 cut(s)	273, 738, 1828
SchI	GAGTC	1 cut(s)	1934
ScrFI	CCNGG	3 cut(s)	73, 356, 1374
SduI	GDGCHC	2 cut(s)	153, 1417
SfaNI	GCATC	2 cut(s)	1252, 1627
SfcI	CTRYAG	4 cut(s)	875, 1542, 1581, 1881
SfuI	TTCGAA	1 cut(s)	1867
SinI	GGWCC	1 cut(s)	1828
SmiMI	CAYNNNNRTG	3 cut(s)	316, 1374, 1857
SmlI	CTYRAG	2 cut(s)	598, 1598
SmoI	CTYRAG	2 cut(s)	598, 1598
SsiI	CCGC	2 cut(s)	1063, 1438
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	753, 1454
StyD4I	CCNGG	3 cut(s)	71, 354, 1372
StyI	CCWWGG	1 cut(s)	671
TaiI	ACGT	2 cut(s)	484, 503
TaqI	TCGA	6 cut(s)	128, 289, 525, 1405, 1485, 1867
TaqII	GACCGA	1 cut(s)	434
TatI	WGTACW	1 cut(s)	1552
TauI	GCSGC	1 cut(s)	1441
TfiI	GAWTC	8 cut(s)	76, 569, 712, 825, 1085, 1463, 1708, 1846
Tru1I	TTAA	5 cut(s)	563, 800, 1220, 1425, 1599
Tru9I	TTAA	5 cut(s)	563, 800, 1220, 1425, 1599
TscAI	CASTG	5 cut(s)	24, 184, 264, 466, 1859
TseFI	GTSAC	2 cut(s)	209, 1791
TseI	GCWGC	3 cut(s)	158, 629, 1877
Tsp45I	GTSAC	2 cut(s)	209, 1791
TspDTI	ATGAA	9 cut(s)	17, 300, 450, 591, 785, 1077, 1202, 1317, 1740
TspGWI	ACGGA	2 cut(s)	502, 1852
TspRI	CASTG	5 cut(s)	24, 184, 264, 466, 1859
Van91I	CCANNNNNTGG	1 cut(s)	1894
Vha464I	CTTAAG	1 cut(s)	1598
VneI	GTGCAC	1 cut(s)	1413
VpaK11BI	GGWCC	1 cut(s)	1828
VspI	ATTAAT	1 cut(s)	563
XagI	CCTNNNNNAGG	1 cut(s)	1584
XapI	RAATTY	3 cut(s)	444, 764, 1421
XceI	RCATGY	2 cut(s)	960, 1042
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1345
XmnI	GAANNNNTTC	2 cut(s)	947, 1956
XspI	CTAG	2 cut(s)	753, 1454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.