Prupe.7G050000_v2.0.a1

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
8706923 .. 8713805
6883 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G050000.2

Sequence Viewer

Length: 1764 bp
ATGCAATACCTAAAATTTAAGAATCAGATTTGCCAGAGGGGTTTTTTGTTTTGTTTTTTTGAACGGAGCCACAGAGGTTATACTTCTGATATCTTAACCGGCCGCACGTGTTTTCACTGCATTGGAGGGTCATATTTTTCATCCTCGTACCCGAAAAATGAAAAGAAACAAAACCAAAAAGTAGCTCCAAGGAATTTGAGAACTGGAGCATTGGCTTCTCTTACTAGATTACGAGCAACTCAAGGAGTGCCTAGAAGACCTGTTTCCGCTAAAACAACAAAGCCCATGTTTGAGGAAAATAAAAAGGATAAGACATTCAAAGAATCAATGGGTACAAACCCAAGCCCTCATAAACCTATTGTCAAGGATGATGGTGCTGAAAGCGATGTGGTTGAGATTGAGAGTTTTAAGAATGACCCTGCGAGAATCGAGGCAATGACAGTTCAACAACTCAGAACAACACTGAGAAATGCTGGGGTTTCTGCCAAAGGCCGTAAATTTGAACTTGTGGCTGCCTTGAAGTGCTTTTTGGAAAAGAAGAAAGATGGTGAAGGTTCCCTGGTAATAGAAGAACAAGTAGCCTCCACTTGTGTTGAAAATGCATCAGAGAAAACTGAGGCTGAAACATCATCTGATGGAGACCAAGTTCAGAATGTCCCTGTTTCGGAGGTTGGTGAACTTCAACGTTACAAGAGAAGGTTAAACCATTCGTCAGTTAAGAGTGAAACTGTGATAGGCTATAGCAAGGTTGCAACGAAAAAGGAGAAGTTGTCAATTGAATCAGAAGACCTTTCAGTTCACAAGCTCTCGAGGACAAGAAAGAAAACATCTTCAGAAACTATTAATTTTGAAGTCAAAACTGATGATAAAGTAGCTGAGCCATGGACAGTTCTTGCACATAAGAAACCTCAGAAAGATTGGGTTCCTTATAATCCTAGAACCATGAAACTTCCACCGCTTGCTAAGGATACTAAATTTTTGAAGCTTATGTCTTGGAATGTCAATGGTTTAAGGGCATTATTGAAGTTAGAGGGATTCTCTGCTTTGCAGCTAGCCCAAAGGGAAGATTTTGATGTACTGTGTCTGCAGGAGACCAAACTGCAGGAGAAGGATGTTGAAGATATGAAAAGGTCTCTGATAGATGGGTATGGGAATAGCTTCTGGACATGTAGTGTTTCCAAGCTTGGTTATTCAGGAACTGCAATTATTTCAAGGATAAAGCCACTTTCAGTCAGATATGGCATTGGCATATCAGATCATGATAGTGAGGGGCGGATTATAACAGCAGAGTTTGATTCATTTTATCTGATAACTGGATATGTTCCTAATTCTGGAGATGGTTTGAGAAGACTGTCATACAGGATTAATGAATGGGATCCATCTCTCAGCAATTACATGAAAGAGCTGGAAAAGTCAAAACCTGTCATTTTAACAGGTGATCTGAATTGTGCTCATCAAGAGATAGATATTTATAACCCAGCTGGAAACAAAAGAAGTGCTGGGTTTACAGATGAAGAAAGGCAATCCTTTGGTTCAAACTTTTTATCCAGGGGATTTGTGGATACCTTTAGAAGGCAACACCCTGGTGTTGTTGGCTATACTTACTGGGGTTATCGACATGGTGGACGCAAATTTAATAGAGGCTGGCGGCTTGACTACTTCCTCGTCTCGGAATCCATATCTGACAAGGTTCATGACTCGTACATTCTGCCGGATATAACTGGCAGCGATCATTGTCCTATAGGCCTTGTACTTAAGCTGTAG

Protein Analysis

588

Amino Acids

66.44

Weight (kDa)

9.19

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 930, 1280, 1473
AciI CCGC 5 cut(s) 103, 267, 956, 1273, 1648
AclI AACGTT 1 cut(s) 685
AclWI GGATC 2 cut(s) 1370, 1383
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 5 cut(s) 14, 193, 497, 974, 1631
AcuI CTGAAG 1 cut(s) 816
AcvI CACGTG 1 cut(s) 108
AfaI GTAC 5 cut(s) 149, 334, 1077, 1703, 1752
AfiI CCNNNNNNNGG 4 cut(s) 664, 1331, 1572, 1669
AflII CTTAAG 1 cut(s) 1754
AflIII ACRYGT 2 cut(s) 107, 1166
AjnI CCWGG 3 cut(s) 558, 1547, 1582
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AleI CACNNNNGTG 1 cut(s) 1584
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
Alw21I GWGCWC 1 cut(s) 1453
Alw26I GTCTC 4 cut(s) 633, 1085, 1137, 1672
AlwI GGATC 2 cut(s) 1370, 1383
AlwNI CAGNNNCTG 1 cut(s) 1199
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 3 cut(s) 100, 490, 1744
ApeKI GCWGC 3 cut(s) 512, 1048, 1725
ApoI RAATTY 5 cut(s) 14, 193, 497, 974, 1631
AseI ATTAAT 2 cut(s) 843, 1365
Asp700I GAANNNNTTC 1 cut(s) 1157
AsuHPI GGTGA 3 cut(s) 560, 686, 1448
AsuNHI GCTAGC 1 cut(s) 1051
AvaI CYCGRG 1 cut(s) 808
BamHI GGATCC 1 cut(s) 1375
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 3 cut(s) 262, 792, 1354
Bbv12I GWGCWC 1 cut(s) 1453
BbvI GCAGC 3 cut(s) 499, 1060, 1737
BccI CCATC 6 cut(s) 365, 539, 629, 1136, 1331, 1387
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 3 cut(s) 560, 1549, 1584
BciVI GTATCC 2 cut(s) 961, 1555
BcoDI GTCTC 4 cut(s) 633, 1085, 1137, 1672
BfaI CTAG 4 cut(s) 225, 252, 936, 1052
BfmI CTRYAG 5 cut(s) 739, 1085, 1100, 1740, 1760
BfrI CTTAAG 1 cut(s) 1754
BfuI GTATCC 2 cut(s) 961, 1555
BisI GCNGC 5 cut(s) 103, 513, 1049, 1649, 1726
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 5 cut(s) 104, 514, 1050, 1650, 1727
Bme1390I CCNGG 3 cut(s) 560, 1549, 1584
BmeT110I CYCGRG 1 cut(s) 808
BmiI GGNNCC 4 cut(s) 68, 556, 924, 1377
BmrFI CCNGG 3 cut(s) 560, 1549, 1584
BmrI ACTGGG 1 cut(s) 1615
BmsI GCATC 1 cut(s) 611
BmtI GCTAGC 1 cut(s) 1055
BmuI ACTGGG 1 cut(s) 1615
BpiI GAAGAC 3 cut(s) 262, 792, 1354
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 2 cut(s) 225, 1353
Bpu10I CCTNAGC 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 3 cut(s) 633, 1085, 1137
BsaJI CCNNGG 5 cut(s) 188, 558, 881, 1548, 1582
BsaXI ACNNNNNCTCC 4 cut(s) 630, 660, 755, 785
Bsc4I CCNNNNNNNGG 4 cut(s) 664, 1331, 1572, 1669
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 208, 1318, 1610, 1726
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 3 cut(s) 560, 1549, 1584
BseDI CCNNGG 5 cut(s) 188, 558, 881, 1548, 1582
BseGI GGATG 3 cut(s) 140, 373, 1117
BseLI CCNNNNNNNGG 4 cut(s) 664, 1331, 1572, 1669
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 6 cut(s) 455, 466, 606, 867, 923, 1399
BseNI ACTGG 4 cut(s) 208, 1318, 1610, 1726
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 499, 1060, 1737
BseYI CCCAGC 3 cut(s) 473, 1477, 1499
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 102, 492, 1746
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 1453
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 99, 1712
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 4 cut(s) 664, 1331, 1572, 1669
BsmAI GTCTC 4 cut(s) 633, 1085, 1137, 1672
BsmBI CGTCTC 1 cut(s) 1672
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 3 cut(s) 102, 492, 1746
Bso31I GGTCTC 3 cut(s) 633, 1085, 1137
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 1453
Bsp143I GATC 4 cut(s) 1255, 1375, 1438, 1729
Bsp1720I GCTNAGC 1 cut(s) 876
Bsp19I CCATGG 1 cut(s) 881
BspACI CCGC 5 cut(s) 103, 267, 956, 1273, 1648
BspANI GGCC 3 cut(s) 102, 492, 1746
BspCNI CTCAG 6 cut(s) 456, 465, 607, 868, 922, 1398
BspHI TCATGA 2 cut(s) 1258, 1693
BspLI GGNNCC 4 cut(s) 68, 556, 924, 1377
BspMAI CTGCAG 2 cut(s) 1089, 1104
BspOI GCTAGC 1 cut(s) 1055
BspPI GGATC 2 cut(s) 1370, 1383
BspTI CTTAAG 1 cut(s) 1754
BspTNI GGTCTC 3 cut(s) 633, 1085, 1137
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 4 cut(s) 208, 1318, 1610, 1726
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 5 cut(s) 188, 558, 881, 1548, 1582
BssMI GATC 4 cut(s) 1255, 1375, 1438, 1729
BssT1I CCWWGG 2 cut(s) 188, 881
Bst2UI CCWGG 3 cut(s) 560, 1549, 1584
Bst4CI ACNGT 5 cut(s) 442, 730, 889, 1080, 1353
BstAFI CTTAAG 1 cut(s) 1754
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 960, 1053, 1646
BstDEI CTNAG 7 cut(s) 452, 464, 615, 876, 909, 963, 1385
BstDSI CCRYGG 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 1570
BstF5I GGATG 3 cut(s) 140, 373, 1117
BstKTI GATC 4 cut(s) 1258, 1378, 1441, 1732
BstMAI GTCTC 4 cut(s) 633, 1085, 1137, 1672
BstMBI GATC 4 cut(s) 1255, 1375, 1438, 1729
BstMCI CGRYCG 1 cut(s) 103
BstNI CCWGG 3 cut(s) 560, 1549, 1584
BstNSI RCATGY 1 cut(s) 1170
BstSCI CCNGG 3 cut(s) 558, 1547, 1582
BstSFI CTRYAG 5 cut(s) 739, 1085, 1100, 1740, 1760
BstV1I GCAGC 3 cut(s) 499, 1060, 1737
BstV2I GAAGAC 3 cut(s) 262, 792, 1354
BstX2I RGATCY 1 cut(s) 1375
BstYI RGATCY 1 cut(s) 1375
BstZI CGGCCG 1 cut(s) 100
BsuI GTATCC 2 cut(s) 961, 1555
BsuRI GGCC 3 cut(s) 102, 492, 1746
BtgI CCRYGG 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 140, 373, 1117
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 461
Cac8I GCNNGC 3 cut(s) 960, 1053, 1646
CaiI CAGNNNCTG 1 cut(s) 1199
CciI TCATGA 2 cut(s) 1258, 1693
Cfr10I RCCGGY 1 cut(s) 98
CseI GACGC 1 cut(s) 1635
Csp6I GTAC 5 cut(s) 148, 333, 1076, 1702, 1751
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 8 cut(s) 286, 882, 943, 1167, 1259, 1396, 1619, 1694
CviQI GTAC 5 cut(s) 148, 333, 1076, 1702, 1751
DdeI CTNAG 7 cut(s) 452, 464, 615, 876, 909, 963, 1385
DpnI GATC 4 cut(s) 1257, 1377, 1440, 1731
DpnII GATC 4 cut(s) 1255, 1375, 1438, 1729
EaeI YGGCCR 1 cut(s) 100
EagI CGGCCG 1 cut(s) 100
EciI GGCGGA 1 cut(s) 1288
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 188, 881
Eco147I AGGCCT 1 cut(s) 1746
Eco31I GGTCTC 3 cut(s) 633, 1085, 1137
Eco32I GATATC 1 cut(s) 91
Eco52I CGGCCG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 816
Eco72I CACGTG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 808
EcoNI CCTNNNNNAGG 1 cut(s) 1570
EcoRII CCWGG 3 cut(s) 558, 1547, 1582
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 188, 881
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 188, 881
Esp3I CGTCTC 1 cut(s) 1672
FaeI CATG 8 cut(s) 289, 885, 946, 1170, 1262, 1399, 1622, 1697
FaqI GGGAC 1 cut(s) 641
FatI CATG 8 cut(s) 285, 881, 942, 1166, 1258, 1395, 1618, 1693
Fnu4HI GCNGC 5 cut(s) 103, 513, 1049, 1649, 1726
FokI GGATG 3 cut(s) 127, 380, 1124
Fsp4HI GCNGC 5 cut(s) 103, 513, 1049, 1649, 1726
FspBI CTAG 4 cut(s) 225, 252, 936, 1052
GluI GCNGC 5 cut(s) 103, 513, 1049, 1649, 1726
GsaI CCCAGC 3 cut(s) 477, 1481, 1503
GsuI CTGGAG 2 cut(s) 225, 1353
HaeIII GGCC 3 cut(s) 102, 492, 1746
HapII CCGG 2 cut(s) 99, 1712
HgaI GACGC 1 cut(s) 1635
Hin1II CATG 8 cut(s) 289, 885, 946, 1170, 1262, 1399, 1622, 1697
HindIII AAGCTT 2 cut(s) 983, 1181
HinfI GANTC 8 cut(s) 22, 323, 426, 779, 1035, 1295, 1673, 1697
HpaII CCGG 2 cut(s) 99, 1712
HphI GGTGA 3 cut(s) 560, 686, 1448
Hpy166II GTNNAC 4 cut(s) 677, 799, 1506, 1625
Hpy188III TCNNGA 7 cut(s) 808, 1162, 1194, 1259, 1332, 1457, 1694
Hpy8I GTNNAC 4 cut(s) 677, 799, 1506, 1625
HpyAV CCTTC 4 cut(s) 545, 690, 1102, 1566
HpyCH4III ACNGT 5 cut(s) 442, 730, 889, 1080, 1353
HpyCH4IV ACGT 2 cut(s) 107, 685
HpyCH4V TGCA 9 cut(s) 4, 120, 602, 752, 896, 1048, 1087, 1102, 1202
HpyF3I CTNAG 7 cut(s) 452, 464, 615, 876, 909, 963, 1385
HpySE526I ACGT 2 cut(s) 107, 685
Hsp92II CATG 8 cut(s) 289, 885, 946, 1170, 1262, 1399, 1622, 1697
Kzo9I GATC 4 cut(s) 1255, 1375, 1438, 1729
LmnI GCTCC 3 cut(s) 66, 190, 206
Lsp1109I GCAGC 3 cut(s) 499, 1060, 1737
LweI GCATC 1 cut(s) 611
MaeI CTAG 4 cut(s) 225, 252, 936, 1052
MaeII ACGT 2 cut(s) 107, 685
MaeIII GTNAC 1 cut(s) 686
MalI GATC 4 cut(s) 1257, 1377, 1440, 1731
MboI GATC 4 cut(s) 1255, 1375, 1438, 1729
MboII GAAGA 9 cut(s) 267, 550, 581, 797, 822, 1076, 1130, 1359, 1526
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 1375
MhlI GDGCHC 1 cut(s) 1453
MlyI GAGTC 1 cut(s) 1691
Mph1103I ATGCAT 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 1157
MslI CAYNNNNRTG 2 cut(s) 1263, 1584
MspA1I CMGCKG 1 cut(s) 1481
MspCI CTTAAG 1 cut(s) 1754
MspI CCGG 2 cut(s) 99, 1712
MspR9I CCNGG 3 cut(s) 560, 1549, 1584
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 3 cut(s) 560, 1549, 1584
NcoI CCATGG 1 cut(s) 881
NdeII GATC 4 cut(s) 1255, 1375, 1438, 1729
NheI GCTAGC 1 cut(s) 1051
NlaIII CATG 8 cut(s) 289, 885, 946, 1170, 1262, 1399, 1622, 1697
NlaIV GGNNCC 4 cut(s) 68, 556, 924, 1377
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 1170
OliI CACNNNNGTG 1 cut(s) 1584
PaeR7I CTCGAG 1 cut(s) 808
PagI TCATGA 2 cut(s) 1258, 1693
PceI AGGCCT 1 cut(s) 1746
PciI ACATGT 1 cut(s) 1166
PdmI GAANNNNTTC 1 cut(s) 1157
PfeI GAWTC 7 cut(s) 22, 323, 426, 779, 1035, 1295, 1673
PkrI GCNGC 5 cut(s) 104, 514, 1050, 1650, 1727
PleI GAGTC 1 cut(s) 1691
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 1 cut(s) 1691
Ppu21I YACGTR 1 cut(s) 108
PscI ACATGT 1 cut(s) 1166
PshBI ATTAAT 2 cut(s) 843, 1365
PsiI TTATAA 3 cut(s) 930, 1280, 1473
Psp1406I AACGTT 1 cut(s) 685
Psp6I CCWGG 3 cut(s) 558, 1547, 1582
PspCI CACGTG 1 cut(s) 108
PspFI CCCAGC 3 cut(s) 473, 1477, 1499
PspGI CCWGG 3 cut(s) 558, 1547, 1582
PspN4I GGNNCC 4 cut(s) 68, 556, 924, 1377
PstI CTGCAG 2 cut(s) 1089, 1104
PstNI CAGNNNCTG 1 cut(s) 1199
PsuI RGATCY 1 cut(s) 1375
PvuII CAGCTG 1 cut(s) 1481
RsaI GTAC 5 cut(s) 149, 334, 1077, 1703, 1752
RsaNI GTAC 5 cut(s) 148, 333, 1076, 1702, 1751
RseI CAYNNNNRTG 2 cut(s) 1263, 1584
SatI GCNGC 5 cut(s) 103, 513, 1049, 1649, 1726
Sau3AI GATC 4 cut(s) 1255, 1375, 1438, 1729
SchI GAGTC 1 cut(s) 1691
ScrFI CCNGG 3 cut(s) 560, 1549, 1584
SduI GDGCHC 1 cut(s) 1453
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 5 cut(s) 739, 1085, 1100, 1740, 1760
Sfr274I CTCGAG 1 cut(s) 808
SlaI CTCGAG 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 1263, 1584
SmlI CTYRAG 3 cut(s) 240, 808, 1754
SmoI CTYRAG 3 cut(s) 240, 808, 1754
SseBI AGGCCT 1 cut(s) 1746
SsiI CCGC 5 cut(s) 103, 267, 956, 1273, 1648
SspMI CTAG 4 cut(s) 225, 252, 936, 1052
StuI AGGCCT 1 cut(s) 1746
StyD4I CCNGG 3 cut(s) 558, 1547, 1582
StyI CCWWGG 2 cut(s) 188, 881
TaaI ACNGT 5 cut(s) 442, 730, 889, 1080, 1353
TaiI ACGT 2 cut(s) 110, 688
TaqI TCGA 3 cut(s) 429, 809, 1615
TatI WGTACW 2 cut(s) 1075, 1750
TauI GCSGC 2 cut(s) 105, 1651
TfiI GAWTC 7 cut(s) 22, 323, 426, 779, 1035, 1295, 1673
TscAI CASTG 2 cut(s) 122, 468
TseI GCWGC 3 cut(s) 512, 1048, 1725
TspDTI ATGAA 9 cut(s) 129, 174, 959, 1139, 1287, 1383, 1412, 1527, 1682
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 2 cut(s) 122, 468
Vha464I CTTAAG 1 cut(s) 1754
VspI ATTAAT 2 cut(s) 843, 1365
XagI CCTNNNNNAGG 1 cut(s) 1570
XapI RAATTY 5 cut(s) 14, 193, 497, 974, 1631
XceI RCATGY 1 cut(s) 1170
XcmI CCANNNNNNNNNTGG 1 cut(s) 1555
XhoI CTCGAG 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 1157
XspI CTAG 4 cut(s) 225, 252, 936, 1052
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.