pycom12g07320

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
7635533 .. 7639843
4311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07320.7

Sequence Viewer

Length: 1632 bp
ATGCAATTAGGGTTTAAGTCTTTCCTCAATCTCAGCAGTAGCTTCGCAGTTTCTCCGACGAATTCCACAACCGGAACAAGAGCATTGGATTCTCTTATTAGATTGAGAGCACCTCAAGCTTTTGTGCCTAAACGCACCGTCTCGACTGCTTCCCCCACAAGAAAGAAATCCCCCAAAGCCAAAGGACCAATGAGTTCCACAAACCCAACTCCTCAGAACCCTATTTTCAAGGAAGACGATGTCGAAAGCAATGAGCTTGAGATTGAGAGTTTTAAGGATGACCCTGCACGAATCGAGGCAATGACGGTTCACCAACTCCGAACTACGTTGAGGAATGTCGGTATCCCTGCCAAAGGTCGTAAATGCGAGCTTGTGTCTGCCTTGAAGTGCTTTTTGGAAAAGAAGATAGATGGTGAAGGTTCTGTGGTAAGACAAGGACAAGTGTCCTCCATTTCTATTGAAAATGCATCGGGTCAAACCAAGGCTGAAACTTCATCTGATGGAGACCATGCTCAAAATGTCGACACTGTTTTGGAGGGTCATGAACTGCAACGGAATAAGAGAAGGTTAAAGCATTCGTCAGTTAAGAGTAAAACTCTTGTACGCGATAACAAAGTTGCCACGAAAAAGGAGAAGCTGTCAATTGAATATGATGAGGTTTCAGGTGAGAAAATCTCGAGGACACGGAGGAAAGTATCTTCAGAAACTATTAGCGTTGATGTCAAAACTGATGATAAAGTGGCTGAGCCGTGGACAGTTCTTGCACACAAGAAACCTCAGAAAGATTGGATTCCTTATAATCCTAGAACAATGAAGCGTCCACTGCTTCCCAAAGATACTAAATTTGTGAAGCTTATGTCTTGGAATGTCAATGGTTTAAGGGCATTACTTAAGCTGGAGGGATTCTCTGCTTTGCAGCTCGCTCAAAGGGAAGATTTTGATGTACTGTGTTTGCAGGAGACCAAACTGCAGGAGAAAGATGTTGAAGATGTGAAAAGGTCTCTGATAGATGGCTATGAGAATAGCTTCTGGACATGTAGTGTTTCCAAACTTGGTTATTCAGGAACTGCAATTATATCTCGGATAAAGCCACATTCTGTCACATATGGCCTTGGCATACCCGATCATGACAGTGAGGGGCGGATTGTAACAGTAGAGTTTGACTCGTTTTACCTGATAAGTGGATATGTTCCTAATTCTGGAGATGGTTTGCGAAGACTGTCATACAGGATCACAGAATGGGATCCAACTCTCAGCAATTACATGAAAGAGCTGGAAAAGTCAAAACCTGTCATTTTAACTGGTGATCTGAACTGTGCTCATCAAGAGATAGACATATATAACCCAGCTGGAAATAGAAGAAGTGCCGGGTTTACAGATGAAGAAAGGCAATCCTTTGGGACAAACTTTTTATCCAAGGGATTTGTGGATACCTTCAGAAGGCAACACCCTGGTGTTGTAGGCTATACATACTGGGGTTATCGGCATGGTGGACGCAAATTTAATAGAGGGTGGCGGCTTGACTACTTCCTCGTCTCAGAATCCATAGCGGACAAGGTTCACGACTCATACATTCTCCCTGATGTTACTGGTAGCGATCATTGCCCTGTAGGTCTTGTATTTAAGCTGTAG

Protein Analysis

544

Amino Acids

61.05

Weight (kDa)

9.2

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccI GTMKAC 1 cut(s) 522
AccII CGCG 1 cut(s) 606
AciI CCGC 3 cut(s) 1141, 1516, 1550
AclWI GGATC 3 cut(s) 1238, 1238, 1251
AcsI RAATTY 3 cut(s) 61, 842, 1499
AcuI CTGAAG 2 cut(s) 684, 1420
AfaI GTAC 2 cut(s) 603, 945
AfiI CCNNNNNNNGG 3 cut(s) 353, 1199, 1440
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 229, 385, 461, 647, 986
AjnI CCWGG 1 cut(s) 1450
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AleI CACNNNNGTG 1 cut(s) 1452
Alw21I GWGCWC 2 cut(s) 112, 1321
Alw26I GTCTC 5 cut(s) 145, 498, 953, 1005, 1540
AlwI GGATC 3 cut(s) 1238, 1238, 1251
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 1 cut(s) 1108
ApeKI GCWGC 1 cut(s) 916
ApoI RAATTY 3 cut(s) 61, 842, 1499
Asp700I GAANNNNTTC 1 cut(s) 1025
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 1369
AsuHPI GGTGA 4 cut(s) 302, 425, 677, 1316
AvaI CYCGRG 1 cut(s) 676
AvaII GGWCC 1 cut(s) 185
BamHI GGATCC 1 cut(s) 1243
BbsI GAAGAC 2 cut(s) 240, 1222
Bbv12I GWGCWC 2 cut(s) 112, 1321
BbvI GCAGC 1 cut(s) 928
BccI CCATC 4 cut(s) 404, 494, 1004, 1199
BceAI ACGGC 1 cut(s) 733
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 1452
BciVI GTATCC 2 cut(s) 353, 1423
BcnI CCSGG 1 cut(s) 1369
BcoDI GTCTC 5 cut(s) 145, 498, 953, 1005, 1540
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 3 cut(s) 968, 1608, 1628
BfrI CTTAAG 1 cut(s) 890
BfuI GTATCC 2 cut(s) 353, 1423
BisI GCNGC 2 cut(s) 917, 1517
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 2 cut(s) 918, 1518
Bme1390I CCNGG 2 cut(s) 1369, 1452
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 676
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 1245
BmrFI CCNGG 2 cut(s) 1369, 1452
BmrI ACTGGG 1 cut(s) 1483
BmsI GCATC 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 1483
BoxI GACNNNNGTC 1 cut(s) 442
BpiI GAAGAC 2 cut(s) 240, 1222
BpmI CTGGAG 2 cut(s) 917, 1221
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 2 cut(s) 99, 278
BpuMI CCSGG 1 cut(s) 1369
BsaI GGTCTC 3 cut(s) 498, 953, 1005
BsaJI CCNNGG 5 cut(s) 480, 749, 1111, 1416, 1450
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 1199, 1440
Bse1I ACTGG 3 cut(s) 1306, 1478, 1594
Bse3DI GCAATG 3 cut(s) 256, 306, 1600
BseBI CCWGG 1 cut(s) 1452
BseDI CCNNGG 5 cut(s) 480, 749, 1111, 1416, 1450
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 3 cut(s) 353, 1199, 1440
BseMI GCAATG 3 cut(s) 256, 306, 1600
BseMII CTCAG 6 cut(s) 46, 227, 735, 791, 1267, 1551
BseNI ACTGG 3 cut(s) 1306, 1478, 1594
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 928
BseYI CCCAGC 1 cut(s) 1345
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 1110
BsiHKAI GWGCWC 2 cut(s) 112, 1321
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 2 cut(s) 72, 1368
BslFI GGGAC 1 cut(s) 1414
BslI CCNNNNNNNGG 3 cut(s) 353, 1199, 1440
BsmAI GTCTC 5 cut(s) 145, 498, 953, 1005, 1540
BsmBI CGTCTC 2 cut(s) 145, 1540
BsmFI GGGAC 1 cut(s) 1414
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 1 cut(s) 1110
Bso31I GGTCTC 3 cut(s) 498, 953, 1005
BsoBI CYCGRG 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 112, 1321
Bsp143I GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 3 cut(s) 1141, 1516, 1550
BspANI GGCC 1 cut(s) 1110
BspCNI CTCAG 6 cut(s) 45, 226, 736, 790, 1266, 1550
BspFNI CGCG 1 cut(s) 606
BspHI TCATGA 2 cut(s) 541, 1126
BspLI GGNNCC 1 cut(s) 1245
BspMAI CTGCAG 1 cut(s) 972
BspPI GGATC 3 cut(s) 1238, 1238, 1251
BspTI CTTAAG 1 cut(s) 890
BspTNI GGTCTC 3 cut(s) 498, 953, 1005
BsrDI GCAATG 3 cut(s) 256, 306, 1600
BsrI ACTGG 3 cut(s) 1306, 1478, 1594
BssECI CCNNGG 5 cut(s) 480, 749, 1111, 1416, 1450
BssMI GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
BssT1I CCWWGG 3 cut(s) 480, 1111, 1416
Bst2UI CCWGG 1 cut(s) 1452
Bst4CI ACNGT 9 cut(s) 139, 307, 529, 757, 948, 1133, 1153, 1221, 1316
BstAFI CTTAAG 1 cut(s) 890
BstC8I GCNNGC 2 cut(s) 368, 921
BstDEI CTNAG 6 cut(s) 32, 213, 744, 777, 1253, 1537
BstDSI CCRYGG 1 cut(s) 749
BstENI CCTNNNNNAGG 2 cut(s) 351, 1438
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 606
BstKTI GATC 5 cut(s) 1126, 1233, 1246, 1309, 1600
BstMAI GTCTC 5 cut(s) 145, 498, 953, 1005, 1540
BstMBI GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
BstMWI GCNNNNNNNGC 3 cut(s) 116, 823, 1602
BstNI CCWGG 1 cut(s) 1452
BstNSI RCATGY 1 cut(s) 1038
BstPAI GACNNNNGTC 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 1367, 1450
BstSFI CTRYAG 3 cut(s) 968, 1608, 1628
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 928
BstV2I GAAGAC 2 cut(s) 240, 1222
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
BsuI GTATCC 2 cut(s) 353, 1423
BsuRI GGCC 1 cut(s) 1110
BtgI CCRYGG 1 cut(s) 749
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 525, 821, 1138
Cac8I GCNNGC 2 cut(s) 368, 921
CaiI CAGNNNCTG 1 cut(s) 1067
CciI TCATGA 2 cut(s) 541, 1126
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 2 cut(s) 806, 1503
Csp6I GTAC 2 cut(s) 602, 944
CviAII CATG 6 cut(s) 509, 542, 1035, 1127, 1264, 1487
CviQI GTAC 2 cut(s) 602, 944
DdeI CTNAG 6 cut(s) 32, 213, 744, 777, 1253, 1537
DpnI GATC 5 cut(s) 1125, 1232, 1245, 1308, 1599
DpnII GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
EciI GGCGGA 1 cut(s) 1156
Eco130I CCWWGG 3 cut(s) 480, 1111, 1416
Eco31I GGTCTC 3 cut(s) 498, 953, 1005
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 684, 1420
Eco88I CYCGRG 1 cut(s) 676
EcoNI CCTNNNNNAGG 2 cut(s) 351, 1438
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 1450
EcoT14I CCWWGG 3 cut(s) 480, 1111, 1416
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 3 cut(s) 480, 1111, 1416
Esp3I CGTCTC 2 cut(s) 145, 1540
FaeI CATG 6 cut(s) 512, 545, 1038, 1130, 1267, 1490
FaqI GGGAC 1 cut(s) 1414
FatI CATG 6 cut(s) 508, 541, 1034, 1126, 1263, 1486
FauNDI CATATG 1 cut(s) 1105
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 917, 1517
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 917, 1517
FspBI CTAG 1 cut(s) 804
GluI GCNGC 2 cut(s) 917, 1517
GsaI CCCAGC 1 cut(s) 1349
GsuI CTGGAG 2 cut(s) 917, 1221
HaeIII GGCC 1 cut(s) 1110
HapII CCGG 2 cut(s) 72, 1368
HgaI GACGC 2 cut(s) 806, 1503
Hin1II CATG 6 cut(s) 512, 545, 1038, 1130, 1267, 1490
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 2 cut(s) 117, 851
HinfI GANTC 7 cut(s) 89, 291, 790, 903, 1163, 1541, 1565
HpaII CCGG 2 cut(s) 72, 1368
HphI GGTGA 4 cut(s) 302, 425, 677, 1316
Hpy166II GTNNAC 7 cut(s) 310, 523, 753, 821, 1374, 1493, 1561
Hpy188III TCNNGA 9 cut(s) 142, 542, 676, 1030, 1062, 1127, 1200, 1325, 1562
Hpy8I GTNNAC 7 cut(s) 310, 523, 753, 821, 1374, 1493, 1561
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 410, 558, 1434, 1444
HpyCH4III ACNGT 9 cut(s) 139, 307, 529, 757, 948, 1133, 1153, 1221, 1316
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 9 cut(s) 4, 287, 467, 550, 764, 916, 955, 970, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 823, 1602
HpyF3I CTNAG 6 cut(s) 32, 213, 744, 777, 1253, 1537
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 6 cut(s) 512, 545, 1038, 1130, 1267, 1490
Kzo9I GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
Lsp1109I GCAGC 1 cut(s) 928
LweI GCATC 1 cut(s) 476
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 1099, 1147, 1585
MalI GATC 5 cut(s) 1125, 1232, 1245, 1308, 1599
MboI GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
MboII GAAGA 8 cut(s) 245, 415, 690, 944, 998, 1227, 1371, 1394
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 2 cut(s) 112, 1321
MluCI AATT 8 cut(s) 5, 61, 642, 842, 1071, 1195, 1258, 1499
MlyI GAGTC 2 cut(s) 1157, 1559
MmeI TCCRAC 2 cut(s) 80, 1271
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 1025
MseI TTAA 9 cut(s) 15, 273, 569, 585, 878, 891, 1298, 1503, 1623
MslI CAYNNNNRTG 2 cut(s) 1131, 1452
MspA1I CMGCKG 1 cut(s) 1349
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 2 cut(s) 72, 1368
MspR9I CCNGG 2 cut(s) 1369, 1452
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 1452
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 116, 823, 1602
NciI CCSGG 1 cut(s) 1369
NdeI CATATG 1 cut(s) 1105
NdeII GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
NlaIII CATG 6 cut(s) 512, 545, 1038, 1130, 1267, 1490
NlaIV GGNNCC 1 cut(s) 1245
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 1038
OliI CACNNNNGTG 1 cut(s) 1452
PaeR7I CTCGAG 1 cut(s) 676
PagI TCATGA 2 cut(s) 541, 1126
PciI ACATGT 1 cut(s) 1034
PctI GAATGC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 1025
PfeI GAWTC 5 cut(s) 89, 291, 790, 903, 1541
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 918, 1518
PleI GAGTC 2 cut(s) 1157, 1559
PpsI GAGTC 2 cut(s) 1157, 1559
PscI ACATGT 1 cut(s) 1034
PshAI GACNNNNGTC 1 cut(s) 442
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 1450
PspFI CCCAGC 1 cut(s) 1345
PspGI CCWGG 1 cut(s) 1450
PspN4I GGNNCC 1 cut(s) 1245
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 972
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 1243
PsyI GACNNNGTC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 1349
RsaI GTAC 2 cut(s) 603, 945
RsaNI GTAC 2 cut(s) 602, 944
RseI CAYNNNNRTG 2 cut(s) 1131, 1452
SalI GTCGAC 1 cut(s) 521
SaqAI TTAA 9 cut(s) 15, 273, 569, 585, 878, 891, 1298, 1503, 1623
SatI GCNGC 2 cut(s) 917, 1517
Sau3AI GATC 5 cut(s) 1123, 1230, 1243, 1306, 1597
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 1157, 1559
ScrFI CCNGG 2 cut(s) 1369, 1452
SduI GDGCHC 2 cut(s) 112, 1321
SfaNI GCATC 1 cut(s) 476
SfcI CTRYAG 3 cut(s) 968, 1608, 1628
Sfr274I CTCGAG 1 cut(s) 676
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 676
SmiMI CAYNNNNRTG 2 cut(s) 1131, 1452
SmlI CTYRAG 4 cut(s) 114, 257, 676, 890
SmoI CTYRAG 4 cut(s) 114, 257, 676, 890
Sse9I AATT 8 cut(s) 5, 61, 642, 842, 1071, 1195, 1258, 1499
SsiI CCGC 3 cut(s) 1141, 1516, 1550
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 1367, 1450
StyI CCWWGG 3 cut(s) 480, 1111, 1416
TaaI ACNGT 9 cut(s) 139, 307, 529, 757, 948, 1133, 1153, 1221, 1316
TaiI ACGT 1 cut(s) 329
TaqI TCGA 5 cut(s) 143, 243, 294, 522, 677
TasI AATT 8 cut(s) 5, 61, 642, 842, 1071, 1195, 1258, 1499
TatI WGTACW 1 cut(s) 943
TauI GCSGC 1 cut(s) 1519
TfiI GAWTC 5 cut(s) 89, 291, 790, 903, 1541
Tru1I TTAA 9 cut(s) 15, 273, 569, 585, 878, 891, 1298, 1503, 1623
Tru9I TTAA 9 cut(s) 15, 273, 569, 585, 878, 891, 1298, 1503, 1623
TscAI CASTG 3 cut(s) 532, 828, 1138
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 1 cut(s) 916
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 5 cut(s) 483, 558, 827, 1280, 1395
TspGWI ACGGA 2 cut(s) 568, 700
TspRI CASTG 3 cut(s) 532, 828, 1138
Tth111I GACNNNGTC 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 185
XagI CCTNNNNNAGG 2 cut(s) 351, 1438
XapI RAATTY 3 cut(s) 61, 842, 1499
XceI RCATGY 1 cut(s) 1038
XcmI CCANNNNNNNNNTGG 1 cut(s) 1423
XhoI CTCGAG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 1025
XspI CTAG 1 cut(s) 804
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.