Rmu_sc0012967.1_g000001

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012967.1
Physical Location & Seq
Reverse (-)
3801 .. 11683
7883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012967.1_g000001.1.cds

Sequence Viewer

Length: 1662 bp
atgcttcttttatgtgcaccagaagataccattaagggttgtggagatttgttggtgccaagagatgtaggagttattcgttcttctgaaggtgttgccccattgtttcaaactggaagctctggtagctcaaatctattcaagttgccagctgctgcagtccttgcaacttttgacaggaatcttagaagtggagtgcttagagtaaaagcaacaacagcgagacccatttcgagttcaacaaagaagcccgtgctcaaagcagcaatggaagcaaaccccactgttatcaaggagattgagagtttgaaaggtgaccactctaagattgaggcaatgacagttgaacaactcaggacaacactgaggaatattggggcctctgccaaaggtcgaaaatgcgaacttgtgtcttcattgaagtgctttctggaaaataagatagatggtgaaagttcccaggtaatagaacagcaaatatcctccaccatttgtgttgaaactgtatcagccaaaaccgagaccgaacctttatctaatgaagaccaaattcagaatgtcaacactgtttccgatgttcaattacgtcaacggaataagcgaacgtcatcgtctaagagtaaaactgtcgattgtgatgataaggttgtaaagaaagagaagctatcaattgaatcagatgaagtttcagttggaaacctctcaaggacaaggaggaaagtatcttcaaaagctgcgagtattaccgtcaaaactgatgataaggtagctgaaccatggacggttcttgcgcacaagaaacctcagaaagattggattccttataatcctaaaaccatgaggccctcagagcttactagggagactaaatttatgaagcttatgtcgtggaatgtcaatggtttaagggcattattgaagttagagggattctctgctttgcaacttgctgaaagagaagattttgatgtattatgtctgcaggagaccaaattgcaggagaaggatgttgaagatgtgaagaggtctctcatagacggctatgataatagcttctggacatgtagtgtttccaagctcggttactcgggaactgcgattatctcccgagtaaagccactttcagttagctatggacttggcatgtcagatcatgatagcgaggggcggattgtaacagtagagtttgattcattttacctgataagtggatatgttcctaattctggagatggtttgaggagactgcagacatacaggattacagaatgggatccatctctcagtaattacatgaaagagctggaaaagtcaaagccggtaattttaactggtgatttgaacagtgcacatcaagagatagacatttataacccagctggaaatagaagaagtgctgggtttacagatgaagaacggcaatccttcgggacaaactttttatccagaggatttgtggatacatttagaaggcaacaccctggtgttgttggctatacttactggggctatcgacatggtgcacgcaaatttaacagagggtggcggcttgactacttcctagtctcagaatctgtggctgacaaggttcatgactcgtacattttgcctaatattattggtagcgatcattgtcctataggccttgtaattaagctgtag

Protein Analysis

553

Amino Acids

61.61

Weight (kDa)

8.81

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 825, 1371
Acc16I TGCGCA 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 2 cut(s) 1168, 1546
AclWI GGATC 2 cut(s) 1268, 1281
AcsI RAATTY 3 cut(s) 549, 869, 1529
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 1601
AfiI CCNNNNNNNGG 1 cut(s) 1226
AflIII ACRYGT 1 cut(s) 1061
AjnI CCWGG 2 cut(s) 459, 1480
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AleI CACNNNNGTG 1 cut(s) 1482
Alw21I GWGCWC 4 cut(s) 19, 258, 1351, 1525
Alw26I GTCTC 7 cut(s) 217, 515, 857, 980, 1032, 1237, 1570
Alw44I GTGCAC 3 cut(s) 15, 1347, 1521
AlwI GGATC 2 cut(s) 1268, 1281
AlwNI CAGNNNCTG 2 cut(s) 155, 1574
Ama87I CYCGRG 2 cut(s) 1087, 1107
AoxI GGCC 3 cut(s) 378, 842, 1642
ApaLI GTGCAC 3 cut(s) 15, 1347, 1521
ApeKI GCWGC 4 cut(s) 152, 155, 263, 734
ApoI RAATTY 3 cut(s) 549, 869, 1529
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 2 cut(s) 378, 843
AsuHPI GGTGA 3 cut(s) 326, 461, 1346
AvaI CYCGRG 2 cut(s) 1087, 1107
BaeGI GKGCMC 3 cut(s) 19, 1351, 1525
BamHI GGATCC 1 cut(s) 1273
BanI GGYRCC 1 cut(s) 55
BbsI GAAGAC 2 cut(s) 405, 549
Bbv12I GWGCWC 4 cut(s) 19, 258, 1351, 1525
BbvI GCAGC 4 cut(s) 139, 142, 275, 721
BccI CCATC 3 cut(s) 440, 1226, 1285
BceAI ACGGC 2 cut(s) 1054, 1433
BciT130I CCWGG 2 cut(s) 461, 1482
BciVI GTATCC 1 cut(s) 1453
BcoDI GTCTC 7 cut(s) 217, 515, 857, 980, 1032, 1237, 1570
BfaI CTAG 2 cut(s) 858, 1562
BfmI CTRYAG 5 cut(s) 156, 980, 1247, 1638, 1658
BfuI GTATCC 1 cut(s) 1453
BisI GCNGC 5 cut(s) 153, 156, 264, 735, 1547
BlsI GCNGC 5 cut(s) 154, 157, 265, 736, 1548
Bme1390I CCNGG 2 cut(s) 461, 1482
BmeT110I CYCGRG 2 cut(s) 1087, 1107
BmgT120I GGNCC 2 cut(s) 378, 843
BmiI GGNNCC 3 cut(s) 57, 379, 1275
BmrFI CCNGG 2 cut(s) 461, 1482
BmrI ACTGGG 1 cut(s) 1513
BmuI ACTGGG 1 cut(s) 1513
BpiI GAAGAC 2 cut(s) 405, 549
BplI GAGNNNNNCTC 2 cut(s) 917, 949
BpmI CTGGAG 1 cut(s) 1248
BpuEI CTTGAG 1 cut(s) 688
BsaI GGTCTC 4 cut(s) 217, 515, 980, 1032
BsaJI CCNNGG 3 cut(s) 459, 776, 1480
Bsc4I CCNNNNNNNGG 1 cut(s) 1226
Bse118I RCCGGY 1 cut(s) 1318
Bse1I ACTGG 3 cut(s) 118, 1336, 1508
Bse3DI GCAATG 2 cut(s) 273, 342
BseBI CCWGG 2 cut(s) 461, 1482
BseDI CCNNGG 3 cut(s) 459, 776, 1480
BseGI GGATG 1 cut(s) 1012
BseLI CCNNNNNNNGG 1 cut(s) 1226
BseMI GCAATG 2 cut(s) 273, 342
BseMII CTCAG 6 cut(s) 356, 367, 818, 861, 1297, 1581
BseNI ACTGG 3 cut(s) 118, 1336, 1508
BseRI GAGGAG 1 cut(s) 1255
BseSI GKGCMC 3 cut(s) 19, 1351, 1525
BseXI GCAGC 4 cut(s) 139, 142, 275, 721
BseYI CCCAGC 2 cut(s) 1375, 1397
BshFI GGCC 3 cut(s) 380, 844, 1644
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 4 cut(s) 19, 258, 1351, 1525
BsiHKCI CYCGRG 2 cut(s) 1087, 1107
BsiSI CCGG 1 cut(s) 1319
BslFI GGGAC 1 cut(s) 1444
BslI CCNNNNNNNGG 1 cut(s) 1226
BsmAI GTCTC 7 cut(s) 217, 515, 857, 980, 1032, 1237, 1570
BsmFI GGGAC 1 cut(s) 1444
BsnI GGCC 3 cut(s) 380, 844, 1644
Bso31I GGTCTC 4 cut(s) 217, 515, 980, 1032
BsoBI CYCGRG 2 cut(s) 1087, 1107
Bsp1286I GDGCHC 4 cut(s) 19, 258, 1351, 1525
Bsp143I GATC 3 cut(s) 1150, 1273, 1627
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 2 cut(s) 1168, 1546
BspANI GGCC 3 cut(s) 380, 844, 1644
BspCNI CTCAG 6 cut(s) 357, 366, 817, 860, 1296, 1580
BspHI TCATGA 2 cut(s) 1153, 1591
BspLI GGNNCC 3 cut(s) 57, 379, 1275
BspMAI CTGCAG 3 cut(s) 160, 984, 1251
BspPI GGATC 2 cut(s) 1268, 1281
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 4 cut(s) 217, 515, 980, 1032
BsrDI GCAATG 2 cut(s) 273, 342
BsrFI RCCGGY 1 cut(s) 1318
BsrI ACTGG 3 cut(s) 118, 1336, 1508
BssAI RCCGGY 1 cut(s) 1318
BssECI CCNNGG 3 cut(s) 459, 776, 1480
BssMI GATC 3 cut(s) 1150, 1273, 1627
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 2 cut(s) 461, 1482
Bst4CI ACNGT 9 cut(s) 286, 343, 505, 568, 628, 748, 784, 1180, 1346
Bst6I CTCTTC 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 150, 1525
BstDSI CCRYGG 1 cut(s) 776
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 1 cut(s) 1012
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 3 cut(s) 1153, 1276, 1630
BstMAI GTCTC 7 cut(s) 217, 515, 857, 980, 1032, 1237, 1570
BstMBI GATC 3 cut(s) 1150, 1273, 1627
BstMWI GCNNNNNNNGC 5 cut(s) 126, 164, 218, 272, 850
BstNI CCWGG 2 cut(s) 461, 1482
BstNSI RCATGY 2 cut(s) 1065, 1147
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 459, 1480
BstSFI CTRYAG 5 cut(s) 156, 980, 1247, 1638, 1658
BstSLI GKGCMC 3 cut(s) 19, 1351, 1525
BstV1I GCAGC 4 cut(s) 139, 142, 275, 721
BstV2I GAAGAC 2 cut(s) 405, 549
BstX2I RGATCY 1 cut(s) 1273
BstYI RGATCY 1 cut(s) 1273
BsuI GTATCC 1 cut(s) 1453
BsuRI GGCC 3 cut(s) 380, 844, 1644
BtgI CCRYGG 1 cut(s) 776
BtsCI GGATG 1 cut(s) 1012
BtsIMutI CAGTG 4 cut(s) 282, 362, 564, 1351
Cac8I GCNNGC 2 cut(s) 150, 1525
CaiI CAGNNNCTG 2 cut(s) 155, 1574
CciI TCATGA 2 cut(s) 1153, 1591
CfoI GCGC 1 cut(s) 793
Cfr10I RCCGGY 1 cut(s) 1318
Cfr13I GGNCC 2 cut(s) 378, 843
Csp6I GTAC 1 cut(s) 1600
CviAII CATG 8 cut(s) 777, 838, 1062, 1144, 1154, 1294, 1517, 1592
CviQI GTAC 1 cut(s) 1600
DpnI GATC 3 cut(s) 1152, 1275, 1629
DpnII GATC 3 cut(s) 1150, 1273, 1627
Eam1104I CTCTTC 1 cut(s) 1016
EarI CTCTTC 1 cut(s) 1016
EciI GGCGGA 1 cut(s) 1183
Eco130I CCWWGG 1 cut(s) 776
Eco147I AGGCCT 1 cut(s) 1644
Eco31I GGTCTC 4 cut(s) 217, 515, 980, 1032
Eco57I CTGAAG 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 1087, 1107
Eco91I GGTNACC 1 cut(s) 314
EcoO109I RGGNCCY 2 cut(s) 378, 843
EcoO65I GGTNACC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 459, 1480
EcoT14I CCWWGG 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 8 cut(s) 780, 841, 1065, 1147, 1157, 1297, 1520, 1595
FaqI GGGAC 1 cut(s) 1444
FatI CATG 8 cut(s) 776, 837, 1061, 1143, 1153, 1293, 1516, 1591
Fnu4HI GCNGC 5 cut(s) 153, 156, 264, 735, 1547
FokI GGATG 1 cut(s) 1019
Fsp4HI GCNGC 5 cut(s) 153, 156, 264, 735, 1547
FspBI CTAG 2 cut(s) 858, 1562
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 1 cut(s) 792
GluI GCNGC 5 cut(s) 153, 156, 264, 735, 1547
GsaI CCCAGC 2 cut(s) 1379, 1401
GsuI CTGGAG 1 cut(s) 1248
HaeIII GGCC 3 cut(s) 380, 844, 1644
HapII CCGG 1 cut(s) 1319
HhaI GCGC 1 cut(s) 793
Hin1II CATG 8 cut(s) 780, 841, 1065, 1147, 1157, 1297, 1520, 1595
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HincII GTYRAC 2 cut(s) 562, 590
HindII GTYRAC 2 cut(s) 562, 590
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 7 cut(s) 181, 674, 817, 930, 1190, 1571, 1595
HpaII CCGG 1 cut(s) 1319
HphI GGTGA 3 cut(s) 326, 461, 1346
Hpy166II GTNNAC 6 cut(s) 17, 562, 590, 1349, 1404, 1523
Hpy188I TCNGA 8 cut(s) 88, 555, 574, 679, 807, 850, 1150, 1570
Hpy8I GTNNAC 6 cut(s) 17, 562, 590, 1349, 1404, 1523
HpyAV CCTTC 4 cut(s) 83, 997, 1435, 1464
HpyCH4III ACNGT 9 cut(s) 286, 343, 505, 568, 628, 748, 784, 1180, 1346
HpyCH4IV ACGT 2 cut(s) 586, 605
HpyCH4V TGCA 9 cut(s) 17, 158, 167, 943, 982, 997, 1249, 1349, 1523
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 164, 218, 272, 850
HpySE526I ACGT 2 cut(s) 586, 605
Hsp92II CATG 8 cut(s) 780, 841, 1065, 1147, 1157, 1297, 1520, 1595
HspAI GCGC 1 cut(s) 791
Kzo9I GATC 3 cut(s) 1150, 1273, 1627
Lsp1109I GCAGC 4 cut(s) 139, 142, 275, 721
MaeI CTAG 2 cut(s) 858, 1562
MaeII ACGT 2 cut(s) 586, 605
MaeIII GTNAC 3 cut(s) 314, 1082, 1174
MalI GATC 3 cut(s) 1152, 1275, 1629
MboI GATC 3 cut(s) 1150, 1273, 1627
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 4 cut(s) 19, 258, 1351, 1525
MlyI GAGTC 1 cut(s) 1589
MmeI TCCRAC 1 cut(s) 673
MseI TTAA 5 cut(s) 33, 905, 1328, 1533, 1653
MslI CAYNNNNRTG 2 cut(s) 421, 1482
MspA1I CMGCKG 2 cut(s) 152, 1379
MspI CCGG 1 cut(s) 1319
MspR9I CCNGG 2 cut(s) 461, 1482
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 2 cut(s) 461, 1482
MwoI GCNNNNNNNGC 5 cut(s) 126, 164, 218, 272, 850
NcoI CCATGG 1 cut(s) 776
NdeII GATC 3 cut(s) 1150, 1273, 1627
NlaIII CATG 8 cut(s) 780, 841, 1065, 1147, 1157, 1297, 1520, 1595
NlaIV GGNNCC 3 cut(s) 57, 379, 1275
NmuCI GTSAC 1 cut(s) 314
NsbI TGCGCA 1 cut(s) 792
NspI RCATGY 2 cut(s) 1065, 1147
OliI CACNNNNGTG 1 cut(s) 1482
PagI TCATGA 2 cut(s) 1153, 1591
PceI AGGCCT 1 cut(s) 1644
PciI ACATGT 1 cut(s) 1061
PcsI WCGNNNNNNNCGW 2 cut(s) 598, 1094
PfeI GAWTC 6 cut(s) 181, 674, 817, 930, 1190, 1571
PkrI GCNGC 5 cut(s) 154, 157, 265, 736, 1548
PleI GAGTC 1 cut(s) 1589
PpsI GAGTC 1 cut(s) 1589
PscI ACATGT 1 cut(s) 1061
PsiI TTATAA 2 cut(s) 825, 1371
Psp6I CCWGG 2 cut(s) 459, 1480
PspEI GGTNACC 1 cut(s) 314
PspFI CCCAGC 2 cut(s) 1375, 1397
PspGI CCWGG 2 cut(s) 459, 1480
PspN4I GGNNCC 3 cut(s) 57, 379, 1275
PspPI GGNCC 2 cut(s) 378, 843
PstI CTGCAG 3 cut(s) 160, 984, 1251
PstNI CAGNNNCTG 2 cut(s) 155, 1574
PsuI RGATCY 1 cut(s) 1273
PvuII CAGCTG 2 cut(s) 152, 1379
RsaI GTAC 1 cut(s) 1601
RsaNI GTAC 1 cut(s) 1600
RseI CAYNNNNRTG 2 cut(s) 421, 1482
SaqAI TTAA 5 cut(s) 33, 905, 1328, 1533, 1653
SatI GCNGC 5 cut(s) 153, 156, 264, 735, 1547
Sau3AI GATC 3 cut(s) 1150, 1273, 1627
Sau96I GGNCC 2 cut(s) 378, 843
SchI GAGTC 1 cut(s) 1589
ScrFI CCNGG 2 cut(s) 461, 1482
SduI GDGCHC 4 cut(s) 19, 258, 1351, 1525
SfcI CTRYAG 5 cut(s) 156, 980, 1247, 1638, 1658
SmiMI CAYNNNNRTG 2 cut(s) 421, 1482
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SseBI AGGCCT 1 cut(s) 1644
SsiI CCGC 2 cut(s) 1168, 1546
SspI AATATT 2 cut(s) 373, 1615
SspMI CTAG 2 cut(s) 858, 1562
StuI AGGCCT 1 cut(s) 1644
StyD4I CCNGG 2 cut(s) 459, 1480
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 9 cut(s) 286, 343, 505, 568, 628, 748, 784, 1180, 1346
TaiI ACGT 2 cut(s) 589, 608
TaqI TCGA 4 cut(s) 233, 394, 630, 1513
TaqII GACCGA 1 cut(s) 539
TauI GCSGC 1 cut(s) 1549
TfiI GAWTC 6 cut(s) 181, 674, 817, 930, 1190, 1571
Tru1I TTAA 5 cut(s) 33, 905, 1328, 1533, 1653
Tru9I TTAA 5 cut(s) 33, 905, 1328, 1533, 1653
TscAI CASTG 4 cut(s) 289, 369, 571, 1351
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 4 cut(s) 152, 155, 263, 734
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 8 cut(s) 405, 555, 696, 890, 1182, 1310, 1425, 1580
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 4 cut(s) 289, 369, 571, 1351
VneI GTGCAC 3 cut(s) 15, 1347, 1521
XapI RAATTY 3 cut(s) 549, 869, 1529
XceI RCATGY 2 cut(s) 1065, 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 1453
XspI CTAG 2 cut(s) 858, 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.