Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003775

Physical Location & Seq

Genomic Coordinates Reverse (-)

29432151 .. 29434800

Gene Structure 2650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCATGGTCTTGACAGTTGTACATACAGGATTACAGAATGGGATCCATCTCTCAGTAATTACATGAAAATAGACATTTATAACCCAGCTGGAAATAGAAGAAGTGCTGGGTTTACAGATGAAGAACGGCAATCCTTCGGGACAAACTTTTTATCCAGAGGATTTGTGGATACATTTAGAAGGCAACACCCTGGTGTTGTTGGCTATACTTACTGGGGCTATCGACATGGTGGACGCAAATTTAACAGAGGGTGGCGGCTTGACTACTTCCTAGTCTCAGAATCTGTGGCTGACAAGGTTCATGACTCGTACATTTTGCCTCATATTATTGGTAGCGATCATTGTCCTATAGGCCTTGTAATTAAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004528 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006289 GO:0006355 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033683 GO:0034641 GO:0042578 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos SAP

Protein Analysis

123

Amino Acids

14.24

Weight (kDa)

8.6

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	50 - 114	3.2e-07	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41460 AT2G41460 AT2G41460 AT2G41460
fragaria_vesca	FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881 FvH4_6g24881
malus_domestica	MD12G1086000.v1.1
prunus_persica	Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1 Prupe.7G050000_v2.0.a1
pyrus_communis	pycom12g07320
rosa_chinensis	RchiOBHm_Chr3g0484531
rosa_laevigata	RLG00000023226
rosa_multiflora	Rmu_sc0012967.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397730
rosa_rugosa	Rorug03G0211400 Rorug03G0211500 Rorug03G0211500
rosa_samantha	Rh3AG262000 Rh3BG297100 Rh3CG294400 Rh3DG290700
rosa_wichuraiana	Rw3G023480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	2 cut(s)	38, 51
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	2 cut(s)	22, 311
AjnI	CCWGG	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	38, 51
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	43
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	348, 368
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	67, 291
BseNI	ACTGG	1 cut(s)	218
BseYI	CCCAGC	2 cut(s)	85, 107
BshFI	GGCC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	43, 337
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	66, 290
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	38, 51
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	43, 337
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	17, 369
BstAUI	TGTACA	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	53, 277
BstKTI	GATC	2 cut(s)	46, 340
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	43, 337
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	348, 368
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	301
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	21, 310
CviAII	CATG	4 cut(s)	5, 64, 227, 302
CviJI	RGCY	6 cut(s)	89, 204, 219, 259, 290, 354
CviKI_1	RGCY	6 cut(s)	89, 204, 219, 259, 290, 354
CviQI	GTAC	2 cut(s)	21, 310
DdeI	CTNAG	2 cut(s)	53, 277
DpnI	GATC	2 cut(s)	45, 339
DpnII	GATC	2 cut(s)	43, 337
Eco147I	AGGCCT	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 67, 230, 305
FaiI	YATR	9 cut(s)	6, 25, 65, 81, 207, 228, 303, 324, 350
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	4, 63, 226, 301
Fnu4HI	GCNGC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	257
GsaI	CCCAGC	2 cut(s)	89, 111
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	8, 67, 230, 305
HinfI	GANTC	2 cut(s)	281, 305
Hpy166II	GTNNAC	2 cut(s)	114, 233
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	11, 139, 156, 302
Hpy8I	GTNNAC	2 cut(s)	114, 233
HpyAV	CCTTC	2 cut(s)	145, 174
HpyCH4III	ACNGT	2 cut(s)	17, 369
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	53, 277
Hsp92II	CATG	4 cut(s)	8, 67, 230, 305
Kzo9I	GATC	2 cut(s)	43, 337
LpnPI	CCDG	8 cut(s)	13, 75, 93, 99, 169, 177, 199, 204
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	45, 339
MboI	GATC	2 cut(s)	43, 337
MboII	GAAGA	2 cut(s)	111, 134
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	3 cut(s)	58, 239, 360
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	3 cut(s)	152, 242, 330
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	243, 363
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	43, 337
NlaIII	CATG	4 cut(s)	8, 67, 230, 305
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	2 cut(s)	85, 107
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	22, 311
RsaNI	GTAC	2 cut(s)	21, 310
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	243, 363
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	43, 337
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	2 cut(s)	91, 300
SfcI	CTRYAG	2 cut(s)	348, 368
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	58, 239, 360
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	17, 369
TaqI	TCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	58, 239, 360
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	243, 363
Tru9I	TTAA	2 cut(s)	243, 363
TspDTI	ATGAA	3 cut(s)	80, 135, 290
XapI	RAATTY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.