AT2G41475

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012884
Physical Location & Seq
Reverse (-)
17294978 .. 17296565
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41475.1

Sequence Viewer

Length: 540 bp
ATGCTCAGATTAGCGATTCCTTTGTTTCTTTTTGCATTATGCTCTTTCACATTATTTTCTTCTGCAAGATCCTTCATCACCACAAAACCTCTTCCGATTGATTCATTTATTCCTAAACCAAAGCTAGAGAATGCGGCTGCGTGTTCTTACACGGTGATCATTAAGACAAGCTGTTCCTCTGTGTCTTACACTAGAGATAAGATCAGTATATCGTTTGGTGATGTCTACGGCAACGAGGTGTATGTGAAGAGACTAGACGATCCATCGTCGAGGACGTTCGAAAAGTGTTCATCAGACACATACAAGATATCGGGACCGTGTATGCGCGACGTTTGTTATCTCTACCTCCTCAGGCAAGGATCCGACGGCTGGAAACCAGAGAATGTTAAGATCTACGGCTCATCCATCAGATCAGTCACTTTCTACTACAACCTTTTCTTGCCTAACTCTGTTTGGTACGGCTTTAATGTCTGCAATGGCATTGGCAATACCAAGTCTTCTCAACCCATTAGTACTACCTCTTCCGTTGCAGCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

179

Amino Acids

19.95

Weight (kDa)

9.06

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 36 - 158 8.9e-58 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41475
fragaria_vesca FvH4_6g29960 FvH4_6g29960
malus_domestica MD00G1023000.v1.1 MD02G1031500.v1.1
prunus_persica Prupe.3G084200_v2.0.a1 Prupe.7G243200_v2.0.a1
pyrus_communis pycom02g02630 pycom17g21450
rosa_chinensis RchiOBHm_Chr2g0135961
rosa_laevigata RLG00000019492
rosa_multiflora Rmu_ssc0000343.1_g000020
rosa_roxburghii Rroxscaffold_2G00108740
rosa_samantha Rh2AG378900 Rh2BG385400 Rh2CG364500 Rh2DG401700
rosa_wichuraiana Rw2G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 327
AciI CCGC 1 cut(s) 134
AclWI GGATC 4 cut(s) 63, 254, 354, 367
AfaI GTAC 2 cut(s) 458, 514
AfiI CCNNNNNNNGG 1 cut(s) 369
AluBI AGCT 3 cut(s) 124, 171, 533
AluI AGCT 3 cut(s) 124, 171, 533
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 4 cut(s) 63, 254, 354, 367
ApeKI GCWGC 2 cut(s) 137, 530
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 70, 166, 230
AsuII TTCGAA 1 cut(s) 279
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 350
BamHI GGATCC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 505, 537
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 271, 413
BceAI ACGGC 4 cut(s) 244, 382, 412, 475
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 3 cut(s) 125, 192, 254
BglII AGATCT 1 cut(s) 390
BisI GCNGC 3 cut(s) 135, 138, 531
BlsI GCNGC 3 cut(s) 136, 139, 532
BmcAI AGTACT 1 cut(s) 514
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 315, 361
BpiI GAAGAC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 481
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 2 cut(s) 19, 364
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 279
Bsp143I GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
BspACI CCGC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 18, 363
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 315, 361
BspPI GGATC 4 cut(s) 63, 254, 354, 367
BspT104I TTCGAA 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 481
BssMI GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
Bst4CI ACNGT 2 cut(s) 154, 318
Bst6I CTCTTC 3 cut(s) 96, 242, 526
BstBI TTCGAA 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 5, 350
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 7 cut(s) 71, 159, 204, 262, 362, 393, 413
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 3 cut(s) 68, 359, 390
BstYI RGATCY 3 cut(s) 68, 359, 390
Bsu36I CCTNAGG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 401
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 457, 513
CviJI RGCY 7 cut(s) 124, 137, 171, 369, 399, 462, 533
CviKI_1 RGCY 7 cut(s) 124, 137, 171, 369, 399, 462, 533
CviQI GTAC 2 cut(s) 457, 513
DdeI CTNAG 2 cut(s) 5, 350
DpnI GATC 7 cut(s) 70, 158, 203, 261, 361, 392, 412
DpnII GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
Eam1104I CTCTTC 3 cut(s) 96, 242, 526
EarI CTCTTC 3 cut(s) 96, 242, 526
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 314
Eco81I CCTNAGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 309
FaiI YATR 6 cut(s) 40, 209, 243, 301, 323, 536
FaqI GGGAC 1 cut(s) 327
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 135, 138, 531
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 3 cut(s) 135, 138, 531
FspBI CTAG 3 cut(s) 125, 192, 254
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 135, 138, 531
HhaI GCGC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 2 cut(s) 16, 101
HphI GGTGA 3 cut(s) 70, 166, 230
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 8, 96, 295, 364, 410
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 271, 332, 368
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 154, 318
HpyCH4IV ACGT 2 cut(s) 275, 330
HpyCH4V TGCA 4 cut(s) 35, 65, 474, 530
HpyF3I CTNAG 2 cut(s) 5, 350
HpySE526I ACGT 2 cut(s) 275, 330
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
LpnPI CCDG 3 cut(s) 337, 355, 390
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 3 cut(s) 125, 192, 254
MaeII ACGT 2 cut(s) 275, 330
MaeIII GTNAC 1 cut(s) 415
MalI GATC 7 cut(s) 70, 158, 203, 261, 361, 392, 412
MboI GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
MboII GAAGA 5 cut(s) 51, 83, 259, 489, 513
MflI RGATCY 3 cut(s) 68, 359, 390
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 7 cut(s) 99, 187, 229, 264, 356, 359, 529
MseI TTAA 3 cut(s) 162, 387, 465
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 327
NdeII GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
NlaIV GGNNCC 2 cut(s) 315, 361
NmuCI GTSAC 1 cut(s) 415
NspV TTCGAA 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 16, 101
PkrI GCNGC 3 cut(s) 136, 139, 532
PspN4I GGNNCC 2 cut(s) 315, 361
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 3 cut(s) 68, 359, 390
RsaI GTAC 2 cut(s) 458, 514
RsaNI GTAC 2 cut(s) 457, 513
SaqAI TTAA 3 cut(s) 162, 387, 465
SatI GCNGC 3 cut(s) 135, 138, 531
Sau3AI GATC 7 cut(s) 68, 156, 201, 259, 359, 390, 410
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 514
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 314
SsiI CCGC 1 cut(s) 134
SspMI CTAG 3 cut(s) 125, 192, 254
TaaI ACNGT 2 cut(s) 154, 318
TaiI ACGT 2 cut(s) 278, 333
TaqI TCGA 2 cut(s) 269, 279
TatI WGTACW 1 cut(s) 512
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 16, 101
Tru1I TTAA 3 cut(s) 162, 387, 465
Tru9I TTAA 3 cut(s) 162, 387, 465
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 137, 530
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 64, 93, 279
TspGWI ACGGA 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 3 cut(s) 125, 192, 254
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.