RchiOBHm_Chr2g0135961

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012884
Physical Location & Seq
Forward (+)
53209174 .. 53210780
1607 bp
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UTR
Exon/CDS
Intron
PRQ50679

Sequence Viewer

Length: 498 bp
ATGAAGGCCGCTGTGACTTTCTTGCTCCATTTTGCCTTCATCTTCAGCACCATACAAGCAAGATCAATCATTCCACAGCCCAAAGCTCTCAGATCTTTCAAGGTCAACAATACCCAGAATGTAGGAAGTTGTTCTTACTCGGTTTCCATAACGACCAGCTGTTCTTCACCCCGATATACTCGAGATCAGATCAGTATTGCATTTGGTGATGCTTATGGCTATCAGGTGTATGCACCTAGAATAGACAATCCACGTTCGAGGGCATTCGAGAGTTGCTCCACCGACACATTTCAGATTTCCGGGCCATGCACGTACCAGATTTGTTATGTGTATCTCTATAGGAGTGGATATGATGGGTGGTTAGTAGACACAGTGACAATCTATGGTCATAATACAAAAGCTGTTACATTCTATTATAACGCTTATATTCCCAGTGATGTTTGGTTTGGATTTAATCTCTGTCATGGTGCTTCAGCATCATCCACTTCAAGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

8.73

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 38 - 154 2e-49 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41475
fragaria_vesca FvH4_6g29960 FvH4_6g29960
malus_domestica MD00G1023000.v1.1 MD02G1031500.v1.1
prunus_persica Prupe.3G084200_v2.0.a1 Prupe.7G243200_v2.0.a1
pyrus_communis pycom02g02630 pycom17g21450
rosa_chinensis RchiOBHm_Chr2g0135961
rosa_laevigata RLG00000019492
rosa_multiflora Rmu_ssc0000343.1_g000020
rosa_roxburghii Rroxscaffold_2G00108740
rosa_samantha Rh2AG378900 Rh2BG385400 Rh2CG364500 Rh2DG401700
rosa_wichuraiana Rw2G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccI GTMKAC 1 cut(s) 366
AciI CCGC 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 28, 456
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 2 cut(s) 100, 489
AluBI AGCT 3 cut(s) 86, 159, 401
AluI AGCT 3 cut(s) 86, 159, 401
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 6, 302
Asp700I GAANNNNTTC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 159, 218
AvaI CYCGRG 1 cut(s) 180
BccI CCATC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 301
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 337
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 199, 485
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpuMI CCSGG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 479
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 432
BshFI GGCC 2 cut(s) 8, 304
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 1 cut(s) 300
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 8, 304
BsoBI CYCGRG 1 cut(s) 180
Bsp143I GATC 4 cut(s) 62, 92, 184, 189
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 8, 304
BspCNI CTCAG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 432
BssMI GATC 4 cut(s) 62, 92, 184, 189
Bst4CI ACNGT 1 cut(s) 373
BstBAI YACGTR 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 4 cut(s) 65, 95, 187, 192
BstMBI GATC 4 cut(s) 62, 92, 184, 189
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 2 cut(s) 8, 304
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 378, 439
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 306, 464, 493
CviJI RGCY 7 cut(s) 8, 79, 86, 159, 219, 304, 401
CviKI_1 RGCY 7 cut(s) 8, 79, 86, 159, 219, 304, 401
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 64, 94, 186, 191
DpnII GATC 4 cut(s) 62, 92, 184, 189
Eco57I CTGAAG 2 cut(s) 28, 456
Eco88I CYCGRG 1 cut(s) 180
FaeI CATG 3 cut(s) 309, 467, 496
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 3 cut(s) 305, 463, 492
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 8, 304
HapII CCGG 1 cut(s) 300
Hin1II CATG 3 cut(s) 309, 467, 496
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 159, 218
Hpy166II GTNNAC 2 cut(s) 106, 367
Hpy188I TCNGA 3 cut(s) 92, 189, 294
Hpy188III TCNNGA 2 cut(s) 182, 268
Hpy8I GTNNAC 2 cut(s) 106, 367
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 253, 311
HpyCH4V TGCA 3 cut(s) 200, 233, 309
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 2 cut(s) 253, 311
Hsp92II CATG 3 cut(s) 309, 467, 496
Kzo9I GATC 4 cut(s) 62, 92, 184, 189
LmnI GCTCC 2 cut(s) 30, 281
LpnPI CCDG 6 cut(s) 128, 169, 209, 313, 329, 445
LweI GCATC 2 cut(s) 199, 485
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 253, 311
MaeIII GTNAC 3 cut(s) 13, 373, 403
MalI GATC 4 cut(s) 64, 94, 186, 191
MboI GATC 4 cut(s) 62, 92, 184, 189
MboII GAAGA 2 cut(s) 34, 156
MflI RGATCY 1 cut(s) 92
MnlI CCTC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 11, 159
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 301
NdeII GATC 4 cut(s) 62, 92, 184, 189
NlaIII CATG 3 cut(s) 309, 467, 496
NmuCI GTSAC 2 cut(s) 13, 373
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 180
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 312
PsiI TTATAA 1 cut(s) 417
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 159
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 4 cut(s) 62, 92, 184, 189
Sau96I GGNCC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 301
SetI ASST 8 cut(s) 88, 105, 161, 228, 238, 256, 314, 403
SfaNI GCATC 2 cut(s) 199, 485
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 256, 314
TaqI TCGA 3 cut(s) 181, 257, 267
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 378, 439
TseFI GTSAC 2 cut(s) 13, 373
Tsp45I GTSAC 2 cut(s) 13, 373
TspDTI ATGAA 2 cut(s) 17, 28
TspRI CASTG 2 cut(s) 378, 439
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.