FvH4_6g29960

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012884
Physical Location & Seq
Forward (+)
23156116 .. 23157916
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29960.t1

Sequence Viewer

Length: 498 bp
ATGAAGGCCGCTGTGACTTTCTTGCTCCATTTTGCCTTCATCTTCAGCACCATACAAGCAAGATCAATCATTCCACAGCCCCAAGCTCTCAGATCTTTCAAGGTCAACGATACCCAGAATGTAGGAAGTTGTTCTTACTCGGTTTCAATCAAGACCAGCTGTTCTTCACCCCGATATACTCGAGATCAGATCAGTATTGCATTTGGTGATGCTTATGGCTATCAGGTGTATGCGCCTAGAATAGACAATCCACGTTCGAGGGCATTCGAGAGTTGCTCCACGGACACATTTCAGATTTCGGGGCCATGCACATACCAGATTTGTTATGTGTATCTCTATAGGAGTGGATATGATGGGTGGTTAGTTGACACAGTGACAATCTATGGTCATTATACAAAAGCTGCTACATTCTATTACAACGCTTATATTCCCAGTGATATTTGGTTTGGATTTAATCTCTGCCATGGTGCTTCAGCATCATCCACTTCAAGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

8.5

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 38 - 154 7.1e-49 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41475
fragaria_vesca FvH4_6g29960 FvH4_6g29960
malus_domestica MD00G1023000.v1.1 MD02G1031500.v1.1
prunus_persica Prupe.3G084200_v2.0.a1 Prupe.7G243200_v2.0.a1
pyrus_communis pycom02g02630 pycom17g21450
rosa_chinensis RchiOBHm_Chr2g0135961
rosa_laevigata RLG00000019492
rosa_multiflora Rmu_ssc0000343.1_g000020
rosa_roxburghii Rroxscaffold_2G00108740
rosa_samantha Rh2AG378900 Rh2BG385400 Rh2CG364500 Rh2DG401700
rosa_wichuraiana Rw2G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 28, 456
AgsI TTSAA 3 cut(s) 100, 147, 489
AluBI AGCT 3 cut(s) 86, 159, 401
AluI AGCT 3 cut(s) 86, 159, 401
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 6, 302
ApeKI GCWGC 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 159, 218
AvaI CYCGRG 1 cut(s) 180
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 347
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 337
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 9, 402
BlsI GCNGC 2 cut(s) 10, 403
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 199, 485
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BsaJI CCNNGG 2 cut(s) 279, 463
Bse1I ACTGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 279, 463
BseGI GGATG 1 cut(s) 479
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 8, 304
BsiHKCI CYCGRG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 8, 304
BsoBI CYCGRG 1 cut(s) 180
Bsp143I GATC 4 cut(s) 62, 92, 184, 189
Bsp19I CCATGG 1 cut(s) 463
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 8, 304
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 279, 463
BssMI GATC 4 cut(s) 62, 92, 184, 189
BssT1I CCWWGG 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 2 cut(s) 279, 463
BstF5I GGATG 1 cut(s) 479
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 4 cut(s) 65, 95, 187, 192
BstMBI GATC 4 cut(s) 62, 92, 184, 189
BstNSI RCATGY 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 2 cut(s) 8, 304
BtgI CCRYGG 2 cut(s) 279, 463
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 378, 439
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 3 cut(s) 306, 464, 493
CviJI RGCY 7 cut(s) 8, 79, 86, 159, 219, 304, 401
CviKI_1 RGCY 7 cut(s) 8, 79, 86, 159, 219, 304, 401
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 64, 94, 186, 191
DpnII GATC 4 cut(s) 62, 92, 184, 189
Eco130I CCWWGG 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 28, 456
Eco88I CYCGRG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 3 cut(s) 309, 467, 496
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 3 cut(s) 305, 463, 492
Fnu4HI GCNGC 2 cut(s) 9, 402
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 2 cut(s) 9, 402
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 9, 402
HaeIII GGCC 2 cut(s) 8, 304
HhaI GCGC 1 cut(s) 235
Hin1II CATG 3 cut(s) 309, 467, 496
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 2 cut(s) 106, 367
HindII GTYRAC 2 cut(s) 106, 367
HphI GGTGA 2 cut(s) 159, 218
Hpy166II GTNNAC 2 cut(s) 106, 367
Hpy188I TCNGA 3 cut(s) 92, 189, 294
Hpy188III TCNNGA 3 cut(s) 151, 182, 268
Hpy8I GTNNAC 2 cut(s) 106, 367
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 200, 309
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 3 cut(s) 309, 467, 496
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 4 cut(s) 62, 92, 184, 189
LmnI GCTCC 2 cut(s) 30, 281
LpnPI CCDG 5 cut(s) 128, 169, 209, 329, 445
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 199, 485
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 13, 373
MalI GATC 4 cut(s) 64, 94, 186, 191
MboI GATC 4 cut(s) 62, 92, 184, 189
MboII GAAGA 2 cut(s) 34, 156
MflI RGATCY 1 cut(s) 92
MnlI CCTC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 11, 159
Mva1269I GAATGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 463
NdeII GATC 4 cut(s) 62, 92, 184, 189
NlaIII CATG 3 cut(s) 309, 467, 496
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 13, 373
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 180
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 10, 403
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 9, 402
Sau3AI GATC 4 cut(s) 62, 92, 184, 189
Sau96I GGNCC 1 cut(s) 302
SetI ASST 6 cut(s) 88, 105, 161, 228, 256, 403
SfaNI GCATC 2 cut(s) 199, 485
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 181, 257, 267
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 378, 439
TseFI GTSAC 2 cut(s) 13, 373
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 13, 373
TspDTI ATGAA 2 cut(s) 17, 28
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 378, 439
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.