Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000343.1

Orthogroup ID

OG0012884

Physical Location & Seq

Genomic Coordinates Forward (+)

45955 .. 47255

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000343.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgaaggccgctgtgactttcttgctccattttgccttcatcttcagcaccatacaagcaagatcaatcattccacagcccaaagctctcagatctttcaaggtcaacaatacccagaatgtaggaagttgttcttactcggtttccataacgaccagctgttcttcaccccgatatactcgagatcagatcagtattgcatttggtgatgcttatggctatcaggtgtatgcacctagaatagacaatccacgttcgagggcattcgagagttgctccaccgacacatttcagatttccgggccatgcacgtaccagatttgttatgtgtatctctataggagtggatatgatgggtggttagtagacacagtgacaatctatggtcataatacaaaagctgttacattctattataacgcttatattcccagtgatgtttggtttggatttaatctctgtcatggtgcttcagcatcatccacttcaagcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATS3

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

8.73

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41475
fragaria_vesca	FvH4_6g29960 FvH4_6g29960
malus_domestica	MD00G1023000.v1.1 MD02G1031500.v1.1
prunus_persica	Prupe.3G084200_v2.0.a1 Prupe.7G243200_v2.0.a1
pyrus_communis	pycom02g02630 pycom17g21450
rosa_chinensis	RchiOBHm_Chr2g0135961
rosa_laevigata	RLG00000019492
rosa_multiflora	Rmu_ssc0000343.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108740
rosa_samantha	Rh2AG378900 Rh2BG385400 Rh2CG364500 Rh2DG401700
rosa_wichuraiana	Rw2G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	9
AcuI	CTGAAG	2 cut(s)	28, 456
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	100, 489
AluBI	AGCT	3 cut(s)	86, 159, 401
AluI	AGCT	3 cut(s)	86, 159, 401
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	2 cut(s)	6, 302
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	159, 218
AvaI	CYCGRG	1 cut(s)	180
BccI	CCATC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	301
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	337
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	199, 485
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	8, 304
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	8, 304
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	62, 92, 184, 189
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	8, 304
BspCNI	CTCAG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	62, 92, 184, 189
Bst4CI	ACNGT	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	4 cut(s)	65, 95, 187, 192
BstMBI	GATC	4 cut(s)	62, 92, 184, 189
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	8, 304
BtsCI	GGATG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	378, 439
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	306, 464, 493
CviJI	RGCY	7 cut(s)	8, 79, 86, 159, 219, 304, 401
CviKI_1	RGCY	7 cut(s)	8, 79, 86, 159, 219, 304, 401
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	64, 94, 186, 191
DpnII	GATC	4 cut(s)	62, 92, 184, 189
Eco57I	CTGAAG	2 cut(s)	28, 456
Eco88I	CYCGRG	1 cut(s)	180
FaeI	CATG	3 cut(s)	309, 467, 496
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	3 cut(s)	305, 463, 492
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	8, 304
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	3 cut(s)	309, 467, 496
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	2 cut(s)	159, 218
Hpy166II	GTNNAC	2 cut(s)	106, 367
Hpy188I	TCNGA	3 cut(s)	92, 189, 294
Hpy188III	TCNNGA	2 cut(s)	182, 268
Hpy8I	GTNNAC	2 cut(s)	106, 367
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	253, 311
HpyCH4V	TGCA	3 cut(s)	200, 233, 309
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	253, 311
Hsp92II	CATG	3 cut(s)	309, 467, 496
Kzo9I	GATC	4 cut(s)	62, 92, 184, 189
LmnI	GCTCC	2 cut(s)	30, 281
LpnPI	CCDG	6 cut(s)	128, 169, 209, 313, 329, 445
LweI	GCATC	2 cut(s)	199, 485
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	253, 311
MaeIII	GTNAC	3 cut(s)	13, 373, 403
MalI	GATC	4 cut(s)	64, 94, 186, 191
MboI	GATC	4 cut(s)	62, 92, 184, 189
MboII	GAAGA	2 cut(s)	34, 156
MflI	RGATCY	1 cut(s)	92
MnlI	CCTC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	11, 159
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	4 cut(s)	62, 92, 184, 189
NlaIII	CATG	3 cut(s)	309, 467, 496
NmuCI	GTSAC	2 cut(s)	13, 373
NspI	RCATGY	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	180
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	312
PsiI	TTATAA	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	4 cut(s)	62, 92, 184, 189
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	301
SetI	ASST	8 cut(s)	88, 105, 161, 228, 238, 256, 314, 403
SfaNI	GCATC	2 cut(s)	199, 485
SfcI	CTRYAG	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	256, 314
TaqI	TCGA	3 cut(s)	181, 257, 267
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	378, 439
TseFI	GTSAC	2 cut(s)	13, 373
Tsp45I	GTSAC	2 cut(s)	13, 373
TspDTI	ATGAA	2 cut(s)	17, 28
TspRI	CASTG	2 cut(s)	378, 439
XceI	RCATGY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.