Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008265

Physical Location & Seq

Genomic Coordinates Forward (+)

17325846 .. 17329235

Gene Structure 3390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGTGGGAAGCATTGAGGCAAAGAGTCTGCAATCAAACGGGTCTGTTCATCATATTGGTCTTAATTTGGAGGAGAAACTTGATGAATTTCGTCGTCTTTTGGGGAAATCAGAAAAAGATCCGTTAAGGATTGTAAGTGTTGGTGCTGGTGCTTGGGGAAGTGTTTTTGCAGCACTTCTTCAAGAAAGCTATGGAGGTTTCAGGGATAAGTTTCAGATCAGGATATGGAGAAGAGCTGGGAGAGCTGTTGATAGAGAAACTGCAGAACATTTGTTTGAAGTGATCAATTCAAGGGAAGATATCTTGAGGAGATTGATAAGACGCTGTGCTTATCTGAAATATGTCGAGGCAAGGCTTGGTGATAGGACACTCTATGCTGATGAGATATTGAAAGACGGGTTTTGTCTTAACATGGTTGATACGCCGCTTTGTCCTCTTAAGGTTGTGACAAATCTGCAAGAAGCTGTGTGGGATGCTGATATTGTTGTTAATGGATTGCCTTCAACTGAAACACGTGAAGTGTTTGAAGAGATTAGTAAGTATTGGAAAGAGAGAATAACGGTTCCGATTATTATCTCTCTGTCAAAGGGTATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAACTGGTGTGCCGATTGACAATGTCCTGTATCTTGGTGGACCAAACATTGCTGCTGAAATTTACAACAAGGAATATGCCAATGCTAGAATCTGTGGAGCTGCTAAATGGAGGAAGCCACTAGCTAAGTTCTTAAGACAACCTCATTTCATTGTTTGGGACAATAGTGATCTTGTGACACATGAAGTAATGGGAGGTCTCAAGAATGTCTACGCCATTGGAGCTGGTATGGTAGCGGCGCTCACTAACGAGAGCGCTACAAGCAAGTCGGTGTATTTTGCTCATTGTACATCTGAGATGATATTTATAACTCATTTACTAGCAGAAGAGCCTGAGAAACTTGCAGGGCCTTTGCTAGCTGACACTTATGTGACCTTATTAAAAGGACGTAATGCATGGTACGGTCAAATGCTGGCAAAGGGTGAAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAGGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAAGTATATTGCCCTCTGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAGAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAACGATCCCAGAGACCGTATTGAGATTGCACAGAGCCATGCATTCTACAGGCCTTCCCTTCTTGGTCAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

462

Amino Acids

51.49

Weight (kDa)

6.81

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	146 - 246	8.9e-11	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	274 - 428	5.2e-19	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41540 AT2G41540 AT2G41540 AT2G41540
malus_domestica	MD12G1082400.v1.1 MD14G1077200.v1.1
prunus_persica	Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1
pyrus_communis	pycom12g06820 pycom14g06600
rosa_chinensis	RchiOBHm_Chr3g0483571
rosa_laevigata	RLG00000023266
rosa_multiflora	Rmu_sc0000555.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398210
rosa_rugosa	Rorug03G0207100 Rorug03G0207200
rosa_samantha	Rh3AG255300 Rh3BG292500 Rh3CG290100 Rh3DG286000
rosa_wichuraiana	Rw3G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	959
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	3 cut(s)	425, 887, 1107
AclWI	GGATC	2 cut(s)	113, 1313
AcsI	RAATTY	2 cut(s)	86, 711
AcuI	CTGAAG	1 cut(s)	1212
AcvI	CACGTG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	940, 1052
AfeI	AGCGCT	1 cut(s)	907
AflII	CTTAAG	3 cut(s)	437, 784, 1174
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	9 cut(s)	182, 278, 291, 391, 504, 527, 596, 608, 1315
AleI	CACNNNNGTG	1 cut(s)	1019
Alw26I	GTCTC	4 cut(s)	854, 1080, 1301, 1320
AlwI	GGATC	2 cut(s)	113, 1313
Aor51HI	AGCGCT	1 cut(s)	907
AoxI	GGCC	3 cut(s)	998, 1281, 1364
ApeKI	GCWGC	3 cut(s)	170, 704, 752
ApoI	RAATTY	2 cut(s)	86, 711
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	2 cut(s)	892, 908
AspS9I	GGNCC	2 cut(s)	692, 998
AsuHPI	GGTGA	3 cut(s)	371, 1085, 1106
AsuNHI	GCTAGC	1 cut(s)	1006
AvaII	GGWCC	1 cut(s)	692
BbrPI	CACGTG	1 cut(s)	515
BbvI	GCAGC	3 cut(s)	182, 691, 739
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	4 cut(s)	854, 1080, 1301, 1320
BfaI	CTAG	4 cut(s)	738, 773, 971, 1007
BfmI	CTRYAG	4 cut(s)	261, 1134, 1206, 1360
BfoI	RGCGCY	2 cut(s)	893, 909
BfrI	CTTAAG	3 cut(s)	437, 784, 1174
BisI	GCNGC	6 cut(s)	171, 425, 705, 753, 888, 1108
BlsI	GCNGC	6 cut(s)	172, 426, 706, 754, 889, 1109
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	692, 998
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	1 cut(s)	463
BmtI	GCTAGC	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	325, 836
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	2 cut(s)	572, 1256
BsaI	GGTCTC	2 cut(s)	854, 1320
BsaWI	WCCGGW	1 cut(s)	1213
Bse1I	ACTGG	2 cut(s)	611, 661
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	2 cut(s)	572, 1256
BseGI	GGATG	2 cut(s)	478, 1309
BseJI	GATNNNNATC	2 cut(s)	572, 1256
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	936, 975, 1292
BseNI	ACTGG	2 cut(s)	611, 661
BseRI	GAGGAG	2 cut(s)	86, 322
BseXI	GCAGC	3 cut(s)	182, 691, 739
BseYI	CCCAGC	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	1218
BshFI	GGCC	3 cut(s)	1000, 1283, 1366
BsiEI	CGRYCG	1 cut(s)	1218
BsiSI	CCGG	1 cut(s)	1214
BslFI	GGGAC	1 cut(s)	824
BsmAI	GTCTC	4 cut(s)	854, 1080, 1301, 1320
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	1 cut(s)	1355
BsnI	GGCC	3 cut(s)	1000, 1283, 1366
Bso31I	GGTCTC	2 cut(s)	854, 1320
Bsp1407I	TGTACA	1 cut(s)	938
Bsp143I	GATC	5 cut(s)	118, 216, 282, 820, 1318
BspACI	CCGC	3 cut(s)	425, 887, 1107
BspANI	GGCC	3 cut(s)	1000, 1283, 1366
BspCNI	CTCAG	3 cut(s)	937, 976, 1291
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	2 cut(s)	265, 1138
BspOI	GCTAGC	1 cut(s)	1010
BspPI	GGATC	2 cut(s)	113, 1313
BspQI	GCTCTTC	2 cut(s)	226, 972
BspTI	CTTAAG	3 cut(s)	437, 784, 1174
BspTNI	GGTCTC	2 cut(s)	854, 1320
BsrDI	GCAATG	1 cut(s)	699
BsrGI	TGTACA	1 cut(s)	938
BsrI	ACTGG	2 cut(s)	611, 661
BssMI	GATC	5 cut(s)	118, 216, 282, 820, 1318
Bst4CI	ACNGT	3 cut(s)	562, 1055, 1331
Bst6I	CTCTTC	4 cut(s)	226, 522, 972, 1188
BstAFI	CTTAAG	3 cut(s)	437, 784, 1174
BstAUI	TGTACA	1 cut(s)	938
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	1008, 1065, 1293
BstDEI	CTNAG	5 cut(s)	777, 945, 984, 1160, 1278
BstF5I	GGATG	2 cut(s)	478, 1309
BstH2I	RGCGCY	2 cut(s)	893, 909
BstHHI	GCGC	2 cut(s)	892, 908
BstKTI	GATC	5 cut(s)	121, 219, 285, 823, 1321
BstMAI	GTCTC	4 cut(s)	854, 1080, 1301, 1320
BstMBI	GATC	5 cut(s)	118, 216, 282, 820, 1318
BstMCI	CGRYCG	1 cut(s)	1218
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 872, 912, 1107, 1142
BstSFI	CTRYAG	4 cut(s)	261, 1134, 1206, 1360
BstV1I	GCAGC	3 cut(s)	182, 691, 739
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	1000, 1283, 1366
BtsCI	GGATG	2 cut(s)	478, 1309
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	1 cut(s)	1143
Cac8I	GCNNGC	3 cut(s)	1008, 1065, 1293
CfoI	GCGC	2 cut(s)	892, 908
Cfr13I	GGNCC	2 cut(s)	692, 998
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	939, 1051
CviAII	CATG	6 cut(s)	412, 833, 1047, 1090, 1224, 1352
CviQI	GTAC	2 cut(s)	939, 1051
DdeI	CTNAG	5 cut(s)	777, 945, 984, 1160, 1278
DpnI	GATC	5 cut(s)	120, 218, 284, 822, 1320
DpnII	GATC	5 cut(s)	118, 216, 282, 820, 1318
DraI	TTTAAA	1 cut(s)	1236
Eam1104I	CTCTTC	4 cut(s)	226, 522, 972, 1188
EarI	CTCTTC	4 cut(s)	226, 522, 972, 1188
Eco147I	AGGCCT	1 cut(s)	1366
Eco31I	GGTCTC	2 cut(s)	854, 1320
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	692
Eco47III	AGCGCT	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	1212
Eco72I	CACGTG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	998
EcoRV	GATATC	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	1048, 1357
FaeI	CATG	6 cut(s)	415, 836, 1050, 1093, 1227, 1355
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	6 cut(s)	411, 832, 1046, 1089, 1223, 1351
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	6 cut(s)	171, 425, 705, 753, 888, 1108
FokI	GGATG	2 cut(s)	485, 1316
Fsp4HI	GCNGC	6 cut(s)	171, 425, 705, 753, 888, 1108
FspBI	CTAG	4 cut(s)	738, 773, 971, 1007
GlaI	GCGC	2 cut(s)	891, 907
GluI	GCNGC	6 cut(s)	171, 425, 705, 753, 888, 1108
GsaI	CCCAGC	1 cut(s)	240
HaeII	RGCGCY	2 cut(s)	893, 909
HaeIII	GGCC	3 cut(s)	1000, 1283, 1366
HapII	CCGG	1 cut(s)	1214
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	2 cut(s)	892, 908
Hin1II	CATG	6 cut(s)	415, 836, 1050, 1093, 1227, 1355
Hin6I	GCGC	2 cut(s)	890, 906
HinP1I	GCGC	2 cut(s)	890, 906
HindIII	AAGCTT	1 cut(s)	1171
HinfI	GANTC	5 cut(s)	25, 643, 741, 1120, 1220
HpaII	CCGG	1 cut(s)	1214
HphI	GGTGA	3 cut(s)	371, 1085, 1106
Hpy166II	GTNNAC	2 cut(s)	692, 862
Hpy188I	TCNGA	6 cut(s)	112, 216, 336, 567, 946, 1192
Hpy188III	TCNNGA	5 cut(s)	182, 220, 304, 605, 853
Hpy8I	GTNNAC	2 cut(s)	692, 862
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	510, 1377, 1382
HpyCH4III	ACNGT	3 cut(s)	562, 1055, 1331
HpyCH4IV	ACGT	2 cut(s)	514, 1039
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 872, 912, 1107, 1142
HpyF3I	CTNAG	5 cut(s)	777, 945, 984, 1160, 1278
HpySE526I	ACGT	2 cut(s)	514, 1039
Hsp92II	CATG	6 cut(s)	415, 836, 1050, 1093, 1227, 1355
HspAI	GCGC	2 cut(s)	890, 906
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	118, 216, 282, 820, 1318
LguI	GCTCTTC	2 cut(s)	226, 972
LmnI	GCTCC	4 cut(s)	749, 872, 1142, 1216
Lsp1109I	GCAGC	3 cut(s)	182, 691, 739
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	4 cut(s)	738, 773, 971, 1007
MaeII	ACGT	2 cut(s)	514, 1039
MaeIII	GTNAC	3 cut(s)	445, 826, 1021
MalI	GATC	5 cut(s)	120, 218, 284, 822, 1320
MboI	GATC	5 cut(s)	118, 216, 282, 820, 1318
MboII	GAAGA	7 cut(s)	170, 243, 308, 539, 989, 1205, 1210
MfeI	CAATTG	1 cut(s)	1154
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	5 cut(s)	64, 86, 286, 711, 1154
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	656
Mph1103I	ATGCAT	2 cut(s)	1048, 1357
MroXI	GAANNNNTTC	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	1019
MspCI	CTTAAG	3 cut(s)	437, 784, 1174
MspI	CCGG	1 cut(s)	1214
MunI	CAATTG	1 cut(s)	1154
Mva1269I	GAATGC	1 cut(s)	1355
MwoI	GCNNNNNNNGC	5 cut(s)	242, 872, 912, 1107, 1142
NdeII	GATC	5 cut(s)	118, 216, 282, 820, 1318
NheI	GCTAGC	1 cut(s)	1006
NlaIII	CATG	6 cut(s)	415, 836, 1050, 1093, 1227, 1355
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	3 cut(s)	445, 826, 1021
NsiI	ATGCAT	2 cut(s)	1048, 1357
OliI	CACNNNNGTG	1 cut(s)	1019
PceI	AGGCCT	1 cut(s)	1366
PciSI	GCTCTTC	2 cut(s)	226, 972
PctI	GAATGC	1 cut(s)	1355
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	4 cut(s)	643, 741, 1120, 1220
PflFI	GACNNNGTC	1 cut(s)	674
PkrI	GCNGC	6 cut(s)	172, 426, 706, 754, 889, 1109
PleI	GAGTC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	959
PspCI	CACGTG	1 cut(s)	515
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	692, 998
PstI	CTGCAG	2 cut(s)	265, 1138
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	674
RsaI	GTAC	2 cut(s)	940, 1052
RsaNI	GTAC	2 cut(s)	939, 1051
RseI	CAYNNNNRTG	1 cut(s)	1019
SapI	GCTCTTC	2 cut(s)	226, 972
SatI	GCNGC	6 cut(s)	171, 425, 705, 753, 888, 1108
Sau3AI	GATC	5 cut(s)	118, 216, 282, 820, 1318
Sau96I	GGNCC	2 cut(s)	692, 998
SchI	GAGTC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	4 cut(s)	261, 1134, 1206, 1360
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	5 cut(s)	304, 437, 784, 851, 1174
SmoI	CTYRAG	5 cut(s)	304, 437, 784, 851, 1174
Sse9I	AATT	5 cut(s)	64, 86, 286, 711, 1154
SseBI	AGGCCT	1 cut(s)	1366
SsiI	CCGC	3 cut(s)	425, 887, 1107
SspMI	CTAG	4 cut(s)	738, 773, 971, 1007
StuI	AGGCCT	1 cut(s)	1366
TaaI	ACNGT	3 cut(s)	562, 1055, 1331
TaiI	ACGT	2 cut(s)	517, 1042
TaqI	TCGA	2 cut(s)	345, 1218
TasI	AATT	5 cut(s)	64, 86, 286, 711, 1154
TatI	WGTACW	1 cut(s)	938
TauI	GCSGC	3 cut(s)	427, 890, 1110
TfiI	GAWTC	4 cut(s)	643, 741, 1120, 1220
TscAI	CASTG	1 cut(s)	1143
TseFI	GTSAC	3 cut(s)	445, 826, 1021
TseI	GCWGC	3 cut(s)	170, 704, 752
Tsp45I	GTSAC	3 cut(s)	445, 826, 1021
TspDTI	ATGAA	5 cut(s)	38, 99, 635, 790, 849
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	1143
Tth111I	GACNNNGTC	1 cut(s)	674
Vha464I	CTTAAG	3 cut(s)	437, 784, 1174
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	2 cut(s)	86, 711
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	4 cut(s)	738, 773, 971, 1007
Zsp2I	ATGCAT	2 cut(s)	1048, 1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.