Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0008265

Physical Location & Seq

Genomic Coordinates Reverse (-)

49629 .. 53456

Gene Structure 3828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgaagatggtggggagcattgaggctgagaatggaagtttgcactcaaatgggtctgttcagaatttcaatggtttggaagagaagcttgatgagctgcggcgcattgtaggcaaggctgatggtgatccattgagaattgtcggtgttggggcaggtgcttggggtagtgtttttgcagctgttttgcaagatagctatggtcagtttcgagacaagattcaaataaggatatggagaagagcaggaagggctgtggatagagccacagctgaacatctttttgaagtgatcaattcaagggaggatgtgttgaggaggctgatcaggcgctgcgcgtatttgaaatatgtggaggcaaggctaggggaccggacactttatgctgatgagattttgaaagatgggttttgtttgaacatgattgatacaccactttgtcatttgaaggtggtgaccaatttgcaggaggctgtctgggatgccgatatcgtggtaaacggcttgccttcaactgaaacaaaagaggtgtttgaagagattagtaattattggaaggaaagaatcacagatcccattatcatctctttggccaaaggtattgaggctgcactcaagcctcttccacatattataactcccacgcagattatttaccgcgcaactggaatccctctggagaacatactttatctgggtggaccaaatattgcctcggagatttacaacaaggaatatgcaaatgctcgaatttgtggagctgagaagtggagaaaacctctggccaagtttttaaggcaaccccattttattgtctgggacaatagcgaccttgttacgcatgaagtcatgggtggtttaaagaatgtatatgccattggagcagggatggtagcagccctcacaaaggagagtgctaccagcaagtctgtatactttgcacattgtacgtcggagatgatatttattactcatttgctggctgaagagcctgagaagcttgcagggcctttgctggctgacacatatgttaccttactgaaaggaagaaatgcgtggtatgggcaaatgttagccaaaggtgaaatcaaccgggatatgggtgagaacatcagaggaaaaggaatgattcagggtgtctctgcagtccaagcattttatgaacttctcagtcaatcgagcctgaatgtgttgcatcctgaagaaaacaagcctgtcgctccagtagagctctgccccatcttgaagacactatataaaatattgataacaagggagcaatcatcacaagctattcttcaagcattgagggatgagaatttaaatgatccaagggaacgcattgagattgcgcagagccatgtcttctataggccttcacttctggggcagcctctgaataatttgaaagtgcaagagaaagtggtaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

477

Amino Acids

53.4

Weight (kDa)

6.59

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41540 AT2G41540 AT2G41540 AT2G41540
malus_domestica	MD12G1082400.v1.1 MD14G1077200.v1.1
prunus_persica	Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1
pyrus_communis	pycom12g06820 pycom14g06600
rosa_chinensis	RchiOBHm_Chr3g0483571
rosa_laevigata	RLG00000023266
rosa_multiflora	Rmu_sc0000555.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398210
rosa_rugosa	Rorug03G0207100 Rorug03G0207200
rosa_samantha	Rh3AG255300 Rh3BG292500 Rh3CG290100 Rh3DG286000
rosa_wichuraiana	Rw3G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AarI	CACCTGC	1 cut(s)	146
Acc16I	TGCGCA	1 cut(s)	1353
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	2 cut(s)	338, 660
AciI	CCGC	2 cut(s)	100, 658
AclWI	GGATC	3 cut(s)	122, 566, 1322
AcoI	YGGCCR	2 cut(s)	591, 783
AcsI	RAATTY	3 cut(s)	64, 750, 1318
AcuI	CTGAAG	2 cut(s)	1005, 1221
AfaI	GTAC	1 cut(s)	949
AfiI	CCNNNNNNNGG	2 cut(s)	907, 1099
AluBI	AGCT	9 cut(s)	88, 97, 182, 198, 272, 761, 1000, 1231, 1292
AluI	AGCT	9 cut(s)	88, 97, 182, 198, 272, 761, 1000, 1231, 1292
Alw21I	GWGCWC	1 cut(s)	1233
Alw26I	GTCTC	2 cut(s)	207, 1144
AlwI	GGATC	3 cut(s)	122, 566, 1322
AlwNI	CAGNNNCTG	2 cut(s)	333, 1396
AoxI	GGCC	4 cut(s)	591, 783, 1007, 1373
ApeKI	GCWGC	6 cut(s)	97, 179, 333, 608, 896, 1390
ApoI	RAATTY	3 cut(s)	64, 750, 1318
AspLEI	GCGC	5 cut(s)	105, 333, 338, 662, 1354
AspS9I	GGNCC	3 cut(s)	370, 701, 1007
AsuC2I	CCSGG	1 cut(s)	1094
AsuHPI	GGTGA	4 cut(s)	137, 466, 1094, 1115
AvaII	GGWCC	2 cut(s)	370, 701
BalI	TGGCCA	2 cut(s)	593, 785
BanII	GRGCYC	1 cut(s)	1233
BbsI	GAAGAC	2 cut(s)	1253, 1357
Bbv12I	GWGCWC	1 cut(s)	1233
BbvI	GCAGC	6 cut(s)	84, 191, 320, 595, 908, 1402
BccI	CCATC	4 cut(s)	116, 398, 883, 1247
BceAI	ACGGC	1 cut(s)	517
BclI	TGATCA	2 cut(s)	291, 324
BcnI	CCSGG	1 cut(s)	1094
BcoDI	GTCTC	2 cut(s)	207, 1144
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	1143, 1369
BfoI	RGCGCY	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	7 cut(s)	98, 101, 180, 334, 609, 897, 1391
BlsI	GCNGC	7 cut(s)	99, 102, 181, 335, 610, 898, 1392
Bme1390I	CCNGG	1 cut(s)	1094
Bme18I	GGWCC	2 cut(s)	370, 701
BmgT120I	GGNCC	3 cut(s)	370, 701, 1007
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	1094
BmsI	GCATC	2 cut(s)	472, 1204
BpiI	GAAGAC	2 cut(s)	1253, 1357
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	2 cut(s)	698, 1206
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	1094
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	714, 1331
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	907, 1099
Bse1I	ACTGG	2 cut(s)	670, 1223
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	714, 1331
BseGI	GGATG	5 cut(s)	313, 487, 894, 1195, 1318
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	907, 1099
BseMII	CTCAG	4 cut(s)	18, 753, 984, 1183
BseNI	ACTGG	2 cut(s)	670, 1223
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	6 cut(s)	84, 191, 320, 595, 908, 1402
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	2 cut(s)	338, 660
BshFI	GGCC	4 cut(s)	593, 785, 1009, 1375
BsiHKAI	GWGCWC	1 cut(s)	1233
BsiSI	CCGG	2 cut(s)	373, 1093
BslFI	GGGAC	2 cut(s)	383, 833
BslI	CCNNNNNNNGG	2 cut(s)	907, 1099
BsmAI	GTCTC	2 cut(s)	207, 1144
BsmFI	GGGAC	2 cut(s)	383, 833
BsnI	GGCC	4 cut(s)	593, 785, 1009, 1375
Bsp1286I	GDGCHC	1 cut(s)	1233
Bsp143I	GATC	5 cut(s)	127, 291, 324, 571, 1327
BspACI	CCGC	2 cut(s)	100, 658
BspANI	GGCC	4 cut(s)	593, 785, 1009, 1375
BspCNI	CTCAG	4 cut(s)	19, 754, 985, 1182
BspFNI	CGCG	2 cut(s)	338, 660
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	1 cut(s)	1147
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	122, 566, 1322
BspQI	GCTCTTC	2 cut(s)	235, 981
BsrI	ACTGG	2 cut(s)	670, 1223
BssECI	CCNNGG	2 cut(s)	714, 1331
BssMI	GATC	5 cut(s)	127, 291, 324, 571, 1327
BssNAI	GTATAC	1 cut(s)	934
BssT1I	CCWWGG	1 cut(s)	1331
Bst1107I	GTATAC	1 cut(s)	934
Bst6I	CTCTTC	5 cut(s)	75, 235, 531, 627, 981
BstC8I	GCNNGC	4 cut(s)	506, 981, 1002, 1017
BstDEI	CTNAG	4 cut(s)	27, 762, 993, 1169
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	5 cut(s)	313, 487, 894, 1195, 1318
BstFNI	CGCG	2 cut(s)	338, 660
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	5 cut(s)	105, 333, 338, 662, 1354
BstKTI	GATC	5 cut(s)	130, 294, 327, 574, 1330
BstMAI	GTCTC	2 cut(s)	207, 1144
BstMBI	GATC	5 cut(s)	127, 291, 324, 571, 1327
BstMWI	GCNNNNNNNGC	8 cut(s)	94, 111, 251, 328, 881, 997, 1006, 1151
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	1092
BstSFI	CTRYAG	2 cut(s)	1143, 1369
BstUI	CGCG	2 cut(s)	338, 660
BstV1I	GCAGC	6 cut(s)	84, 191, 320, 595, 908, 1402
BstV2I	GAAGAC	2 cut(s)	1253, 1357
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BstZ17I	GTATAC	1 cut(s)	934
BsuRI	GGCC	4 cut(s)	593, 785, 1009, 1375
BtsCI	GGATG	5 cut(s)	313, 487, 894, 1195, 1318
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	506, 981, 1002, 1017
CaiI	CAGNNNCTG	2 cut(s)	333, 1396
CfoI	GCGC	5 cut(s)	105, 333, 338, 662, 1354
Cfr13I	GGNCC	3 cut(s)	370, 701, 1007
Csp6I	GTAC	1 cut(s)	948
CviAII	CATG	4 cut(s)	421, 842, 850, 1361
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	4 cut(s)	27, 762, 993, 1169
DpnI	GATC	5 cut(s)	129, 293, 326, 573, 1329
DpnII	GATC	5 cut(s)	127, 291, 324, 571, 1327
DraI	TTTAAA	2 cut(s)	861, 1323
EaeI	YGGCCR	2 cut(s)	591, 783
Eam1104I	CTCTTC	5 cut(s)	75, 235, 531, 627, 981
EarI	CTCTTC	5 cut(s)	75, 235, 531, 627, 981
Ecl136II	GAGCTC	1 cut(s)	1231
Eco130I	CCWWGG	1 cut(s)	1331
Eco147I	AGGCCT	1 cut(s)	1375
Eco24I	GRGCYC	1 cut(s)	1233
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	370, 701
Eco53kI	GAGCTC	1 cut(s)	1231
Eco57I	CTGAAG	2 cut(s)	1005, 1221
Eco91I	GGTNACC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	1231
EcoNI	CCTNNNNNAGG	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	1007
EcoO65I	GGTNACC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	1331
EcoT38I	GRGCYC	1 cut(s)	1233
ErhI	CCWWGG	1 cut(s)	1331
FaeI	CATG	4 cut(s)	424, 845, 853, 1364
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 1281, 1313
FaqI	GGGAC	2 cut(s)	383, 833
FatI	CATG	4 cut(s)	420, 841, 849, 1360
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	291, 324
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	7 cut(s)	98, 101, 180, 334, 609, 897, 1391
FokI	GGATG	5 cut(s)	320, 494, 901, 1182, 1325
FriOI	GRGCYC	1 cut(s)	1233
Fsp4HI	GCNGC	7 cut(s)	98, 101, 180, 334, 609, 897, 1391
FspBI	CTAG	1 cut(s)	365
FspI	TGCGCA	1 cut(s)	1353
GlaI	GCGC	5 cut(s)	104, 332, 337, 661, 1353
GluI	GCNGC	7 cut(s)	98, 101, 180, 334, 609, 897, 1391
GsuI	CTGGAG	2 cut(s)	698, 1206
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	593, 785, 1009, 1375
HapII	CCGG	2 cut(s)	373, 1093
HhaI	GCGC	5 cut(s)	105, 333, 338, 662, 1354
Hin1II	CATG	4 cut(s)	424, 845, 853, 1364
Hin6I	GCGC	5 cut(s)	103, 331, 336, 660, 1352
HinP1I	GCGC	5 cut(s)	103, 331, 336, 660, 1352
HindIII	AAGCTT	2 cut(s)	86, 998
HinfI	GANTC	4 cut(s)	220, 564, 669, 1129
HpaII	CCGG	2 cut(s)	373, 1093
HphI	GGTGA	4 cut(s)	137, 466, 1094, 1115
Hpy166II	GTNNAC	3 cut(s)	499, 701, 934
Hpy188I	TCNGA	5 cut(s)	63, 718, 955, 1115, 1398
Hpy188III	TCNNGA	4 cut(s)	212, 677, 1199, 1243
Hpy8I	GTNNAC	3 cut(s)	499, 701, 934
Hpy99I	CGWCG	1 cut(s)	955
HpyAV	CCTTC	5 cut(s)	243, 442, 519, 550, 1386
HpyCH4IV	ACGT	1 cut(s)	950
HpyF10VI	GCNNNNNNNGC	8 cut(s)	94, 111, 251, 328, 881, 997, 1006, 1151
HpyF3I	CTNAG	4 cut(s)	27, 762, 993, 1169
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	4 cut(s)	424, 845, 853, 1364
HspAI	GCGC	5 cut(s)	103, 331, 336, 660, 1352
Ksp22I	TGATCA	2 cut(s)	291, 324
Kzo9I	GATC	5 cut(s)	127, 291, 324, 571, 1327
LguI	GCTCTTC	2 cut(s)	235, 981
LmnI	GCTCC	5 cut(s)	15, 758, 881, 1225, 1276
Lsp1109I	GCAGC	6 cut(s)	84, 191, 320, 595, 908, 1402
LweI	GCATC	2 cut(s)	472, 1204
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	4 cut(s)	454, 835, 1030, 1426
MalI	GATC	5 cut(s)	129, 293, 326, 573, 1329
MboI	GATC	5 cut(s)	127, 291, 324, 571, 1327
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	1233
MlsI	TGGCCA	2 cut(s)	593, 785
MluCI	AATT	8 cut(s)	64, 138, 295, 460, 547, 750, 1318, 1402
MluNI	TGGCCA	2 cut(s)	593, 785
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	2 cut(s)	593, 785
MscI	TGGCCA	2 cut(s)	593, 785
MseI	TTAA	3 cut(s)	794, 860, 1322
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	2 cut(s)	593, 785
MspA1I	CMGCKG	2 cut(s)	182, 272
MspI	CCGG	2 cut(s)	373, 1093
MspR9I	CCNGG	1 cut(s)	1094
MteI	GCGCNGCGC	1 cut(s)	334
MvnI	CGCG	2 cut(s)	338, 660
MwoI	GCNNNNNNNGC	8 cut(s)	94, 111, 251, 328, 881, 997, 1006, 1151
NciI	CCSGG	1 cut(s)	1094
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	5 cut(s)	127, 291, 324, 571, 1327
NlaIII	CATG	4 cut(s)	424, 845, 853, 1364
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	454
NsbI	TGCGCA	1 cut(s)	1353
PaqCI	CACCTGC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	1375
PciSI	GCTCTTC	2 cut(s)	235, 981
PfeI	GAWTC	4 cut(s)	220, 564, 669, 1129
PkrI	GCNGC	7 cut(s)	99, 102, 181, 335, 610, 898, 1392
PsiI	TTATAA	1 cut(s)	635
Psp124BI	GAGCTC	1 cut(s)	1233
PspEI	GGTNACC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	3 cut(s)	370, 701, 1007
PstI	CTGCAG	1 cut(s)	1147
PstNI	CAGNNNCTG	2 cut(s)	333, 1396
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	2 cut(s)	182, 272
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	1233
SapI	GCTCTTC	2 cut(s)	235, 981
SaqAI	TTAA	3 cut(s)	794, 860, 1322
SatI	GCNGC	7 cut(s)	98, 101, 180, 334, 609, 897, 1391
Sau3AI	GATC	5 cut(s)	127, 291, 324, 571, 1327
Sau96I	GGNCC	3 cut(s)	370, 701, 1007
ScrFI	CCNGG	1 cut(s)	1094
SduI	GDGCHC	1 cut(s)	1233
SfaNI	GCATC	2 cut(s)	472, 1204
SfcI	CTRYAG	2 cut(s)	1143, 1369
SinI	GGWCC	2 cut(s)	370, 701
SmiI	ATTTAAAT	1 cut(s)	1323
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	8 cut(s)	64, 138, 295, 460, 547, 750, 1318, 1402
SseBI	AGGCCT	1 cut(s)	1375
SsiI	CCGC	2 cut(s)	100, 658
SspI	AATATT	2 cut(s)	709, 1263
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	1233
StuI	AGGCCT	1 cut(s)	1375
StyD4I	CCNGG	1 cut(s)	1092
StyI	CCWWGG	1 cut(s)	1331
SwaI	ATTTAAAT	1 cut(s)	1323
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	3 cut(s)	211, 748, 1178
TasI	AATT	8 cut(s)	64, 138, 295, 460, 547, 750, 1318, 1402
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	4 cut(s)	220, 564, 669, 1129
Tru1I	TTAA	3 cut(s)	794, 860, 1322
Tru9I	TTAA	3 cut(s)	794, 860, 1322
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	6 cut(s)	97, 179, 333, 608, 896, 1390
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	17, 858, 1176
VpaK11BI	GGWCC	2 cut(s)	370, 701
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	3 cut(s)	64, 750, 1318
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.