Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008265

Physical Location & Seq

Genomic Coordinates Forward (+)

29417408 .. 29422767

Gene Structure 5360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG290100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAAGATGGTGGGGAGCATTGAGGCTGAGAATGGAAGTTTGCACTCAAATGGGTCTGTTCAGAATTTCAATGGTTTGGAAGAGAAGCTTGATGAGCTGCGGCGCATTGTAGGCAAGGCTGATGGTGATCCATTGAGAATTGTCGGTGTTGGGGCAGGTGCTTGGGGTAGTGTTTTTGCAGCTGTTTTGCAAGATAGCTATGGTCAGTTTCGAGACAAGATTCAAATAAGGATATGGAGAAGAGCAGGAAGGGCTGTGGATAGAGCCACAGCTGAACATCTTTTTGAAGTGATCAATTCAAGGGAGGATGTGTTGAGGAGGCTGATCAGGCGCTGCGCGTATTTGAAATATGTGGAGGCAAGGCTAGGGGACCGGACACTTTATGCAGATGAGATTTTGAAAGATGGGTTTTGTTTGAACATGATTGATACACCACTTTGTCATTTGAAGGTGGTGACCAATTTGCAGGAGGCTGTCTGGGATGCCGATATCGTGGTAAATGGCTTGCCTTCAACTGAAACAAAAGAGGTGTTTGAAGAAATTAGTAATTATTGGAAGGAAAGAATCACAGATCCCATTATCATCTCTTTGGCCAAAGGTATTGAGGCTGCACTCAAGCCTCTTCCACATATTATAACTCCCACGCAGATTATTTACCGCGCAACTGGAATCCCTCTGGAGAACATACTTTATCTGGGTGGACCAAATATTGCCTCAGAGATTTACAACAAGGAATATGCAAATGCTCGAATTTGTGGAGCTGAGAAGTGGAGAAAACCTCTGGCCAAGTTTTTAAGGCAACCCCATTTTATTGTCTGGGACAATAGCGACCTTGTTACGCATGAAGTCATGGGTGGTTTAAAGAATGTATATGCCATTGGAGCAGGGATGGTAGCAGCCCTCACAAAGGAGAGTGCTACCAGCAAGTCTGTATACTTTGCACATTGTACGTCGGAGATGATATTTATTACTCATTTGCTGGCTGAAGAGCCTGAGAAGCTTGCAGGGCCTTTGCTGGCTGACACATATGTTACCTTACTGAAAGGAAGAAATGCATGGTATGGGCAAATGTTAGCCAAAGGTGAAATCAACCGGGATATGGGTGAGAACATCAGAGGAAAAGGAATGATTCAGGTATATATCGATAGTAATTTACAGTACCCCTTAAAAAGAAATAAGATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

395

Amino Acids

44.34

Weight (kDa)

7.64

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	148 - 249	2.1e-11	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	277 - 370	3.6e-14	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41540 AT2G41540 AT2G41540 AT2G41540
malus_domestica	MD12G1082400.v1.1 MD14G1077200.v1.1
prunus_persica	Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1
pyrus_communis	pycom12g06820 pycom14g06600
rosa_chinensis	RchiOBHm_Chr3g0483571
rosa_laevigata	RLG00000023266
rosa_multiflora	Rmu_sc0000555.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398210
rosa_rugosa	Rorug03G0207100 Rorug03G0207200
rosa_samantha	Rh3AG255300 Rh3BG292500 Rh3CG290100 Rh3DG286000
rosa_wichuraiana	Rw3G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	2 cut(s)	338, 660
AciI	CCGC	2 cut(s)	100, 658
AclWI	GGATC	2 cut(s)	122, 566
AcoI	YGGCCR	2 cut(s)	591, 783
AcsI	RAATTY	2 cut(s)	64, 750
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	2 cut(s)	949, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	907, 1099
AluBI	AGCT	7 cut(s)	88, 97, 182, 198, 272, 761, 1000
AluI	AGCT	7 cut(s)	88, 97, 182, 198, 272, 761, 1000
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	122, 566
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	3 cut(s)	591, 783, 1007
ApeKI	GCWGC	5 cut(s)	97, 179, 333, 608, 896
ApoI	RAATTY	2 cut(s)	64, 750
AspLEI	GCGC	4 cut(s)	105, 333, 338, 662
AspS9I	GGNCC	3 cut(s)	370, 701, 1007
AsuC2I	CCSGG	1 cut(s)	1094
AsuHPI	GGTGA	4 cut(s)	137, 466, 1094, 1115
AvaII	GGWCC	2 cut(s)	370, 701
BalI	TGGCCA	2 cut(s)	593, 785
BbvI	GCAGC	5 cut(s)	84, 191, 320, 595, 908
BccI	CCATC	3 cut(s)	116, 398, 883
BclI	TGATCA	2 cut(s)	291, 324
BcnI	CCSGG	1 cut(s)	1094
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	6 cut(s)	98, 101, 180, 334, 609, 897
BlsI	GCNGC	6 cut(s)	99, 102, 181, 335, 610, 898
Bme1390I	CCNGG	1 cut(s)	1094
Bme18I	GGWCC	2 cut(s)	370, 701
BmgT120I	GGNCC	3 cut(s)	370, 701, 1007
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	1094
BmsI	GCATC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	1094
Bsa29I	ATCGAT	1 cut(s)	1143
BsaBI	GATNNNNATC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	907, 1099
Bse1I	ACTGG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	1143
BseGI	GGATG	3 cut(s)	313, 487, 894
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	907, 1099
BseMII	CTCAG	4 cut(s)	18, 729, 753, 984
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	5 cut(s)	84, 191, 320, 595, 908
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	2 cut(s)	338, 660
BshFI	GGCC	3 cut(s)	593, 785, 1009
BshVI	ATCGAT	1 cut(s)	1143
BsiSI	CCGG	2 cut(s)	373, 1093
BslFI	GGGAC	2 cut(s)	383, 833
BslI	CCNNNNNNNGG	2 cut(s)	907, 1099
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	383, 833
BsnI	GGCC	3 cut(s)	593, 785, 1009
Bsp143I	GATC	4 cut(s)	127, 291, 324, 571
BspACI	CCGC	2 cut(s)	100, 658
BspANI	GGCC	3 cut(s)	593, 785, 1009
BspCNI	CTCAG	4 cut(s)	19, 728, 754, 985
BspDI	ATCGAT	1 cut(s)	1143
BspFNI	CGCG	2 cut(s)	338, 660
BspLI	GGNNCC	1 cut(s)	371
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	122, 566
BspQI	GCTCTTC	2 cut(s)	235, 981
BsrI	ACTGG	1 cut(s)	670
BssMI	GATC	4 cut(s)	127, 291, 324, 571
BssNAI	GTATAC	1 cut(s)	934
Bst1107I	GTATAC	1 cut(s)	934
Bst4CI	ACNGT	1 cut(s)	1158
Bst6I	CTCTTC	4 cut(s)	75, 235, 627, 981
BstC8I	GCNNGC	4 cut(s)	506, 981, 1002, 1017
BstDEI	CTNAG	4 cut(s)	27, 715, 762, 993
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	3 cut(s)	313, 487, 894
BstFNI	CGCG	2 cut(s)	338, 660
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	4 cut(s)	105, 333, 338, 662
BstKTI	GATC	4 cut(s)	130, 294, 327, 574
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	127, 291, 324, 571
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 111, 251, 328, 881, 997, 1006
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	1092
BstUI	CGCG	2 cut(s)	338, 660
BstV1I	GCAGC	5 cut(s)	84, 191, 320, 595, 908
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BstZ17I	GTATAC	1 cut(s)	934
Bsu15I	ATCGAT	1 cut(s)	1143
BsuRI	GGCC	3 cut(s)	593, 785, 1009
BsuTUI	ATCGAT	1 cut(s)	1143
BtsCI	GGATG	3 cut(s)	313, 487, 894
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	506, 981, 1002, 1017
CaiI	CAGNNNCTG	1 cut(s)	333
CfoI	GCGC	4 cut(s)	105, 333, 338, 662
Cfr13I	GGNCC	3 cut(s)	370, 701, 1007
ClaI	ATCGAT	1 cut(s)	1143
Csp6I	GTAC	2 cut(s)	948, 1159
CviAII	CATG	4 cut(s)	421, 842, 850, 1056
CviQI	GTAC	2 cut(s)	948, 1159
DdeI	CTNAG	4 cut(s)	27, 715, 762, 993
DpnI	GATC	4 cut(s)	129, 293, 326, 573
DpnII	GATC	4 cut(s)	127, 291, 324, 571
DraI	TTTAAA	1 cut(s)	861
EaeI	YGGCCR	2 cut(s)	591, 783
Eam1104I	CTCTTC	4 cut(s)	75, 235, 627, 981
EarI	CTCTTC	4 cut(s)	75, 235, 627, 981
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	370, 701
Eco57I	CTGAAG	1 cut(s)	1005
Eco91I	GGTNACC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	1007
EcoO65I	GGTNACC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	1057
FaeI	CATG	4 cut(s)	424, 845, 853, 1059
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	2 cut(s)	383, 833
FatI	CATG	4 cut(s)	420, 841, 849, 1055
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	291, 324
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	6 cut(s)	98, 101, 180, 334, 609, 897
FokI	GGATG	3 cut(s)	320, 494, 901
Fsp4HI	GCNGC	6 cut(s)	98, 101, 180, 334, 609, 897
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	4 cut(s)	104, 332, 337, 661
GluI	GCNGC	6 cut(s)	98, 101, 180, 334, 609, 897
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	593, 785, 1009
HapII	CCGG	2 cut(s)	373, 1093
HhaI	GCGC	4 cut(s)	105, 333, 338, 662
Hin1II	CATG	4 cut(s)	424, 845, 853, 1059
Hin6I	GCGC	4 cut(s)	103, 331, 336, 660
HinP1I	GCGC	4 cut(s)	103, 331, 336, 660
HindIII	AAGCTT	2 cut(s)	86, 998
HinfI	GANTC	4 cut(s)	220, 564, 669, 1129
HpaII	CCGG	2 cut(s)	373, 1093
HphI	GGTGA	4 cut(s)	137, 466, 1094, 1115
Hpy166II	GTNNAC	2 cut(s)	701, 934
Hpy188I	TCNGA	4 cut(s)	63, 718, 955, 1115
Hpy188III	TCNNGA	2 cut(s)	212, 677
Hpy8I	GTNNAC	2 cut(s)	701, 934
Hpy99I	CGWCG	1 cut(s)	955
HpyAV	CCTTC	4 cut(s)	243, 442, 519, 550
HpyCH4III	ACNGT	1 cut(s)	1158
HpyCH4IV	ACGT	1 cut(s)	950
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 111, 251, 328, 881, 997, 1006
HpyF3I	CTNAG	4 cut(s)	27, 715, 762, 993
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	4 cut(s)	424, 845, 853, 1059
HspAI	GCGC	4 cut(s)	103, 331, 336, 660
Ksp22I	TGATCA	2 cut(s)	291, 324
Kzo9I	GATC	4 cut(s)	127, 291, 324, 571
LguI	GCTCTTC	2 cut(s)	235, 981
LmnI	GCTCC	3 cut(s)	15, 758, 881
Lsp1109I	GCAGC	5 cut(s)	84, 191, 320, 595, 908
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	3 cut(s)	454, 835, 1030
MalI	GATC	4 cut(s)	129, 293, 326, 573
MboI	GATC	4 cut(s)	127, 291, 324, 571
MboII	GAAGA	7 cut(s)	16, 92, 252, 548, 614, 998, 1059
MflI	RGATCY	1 cut(s)	571
MlsI	TGGCCA	2 cut(s)	593, 785
MluCI	AATT	8 cut(s)	64, 138, 295, 460, 540, 547, 750, 1150
MluNI	TGGCCA	2 cut(s)	593, 785
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	2 cut(s)	593, 785
Mph1103I	ATGCAT	1 cut(s)	1057
MscI	TGGCCA	2 cut(s)	593, 785
MseI	TTAA	4 cut(s)	794, 860, 1166, 1186
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	2 cut(s)	593, 785
MspA1I	CMGCKG	2 cut(s)	182, 272
MspI	CCGG	2 cut(s)	373, 1093
MspR9I	CCNGG	1 cut(s)	1094
MteI	GCGCNGCGC	1 cut(s)	334
MvnI	CGCG	2 cut(s)	338, 660
MwoI	GCNNNNNNNGC	7 cut(s)	94, 111, 251, 328, 881, 997, 1006
NciI	CCSGG	1 cut(s)	1094
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	4 cut(s)	127, 291, 324, 571
NlaIII	CATG	4 cut(s)	424, 845, 853, 1059
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	1057
PaqCI	CACCTGC	1 cut(s)	146
PciSI	GCTCTTC	2 cut(s)	235, 981
PfeI	GAWTC	4 cut(s)	220, 564, 669, 1129
PkrI	GCNGC	6 cut(s)	99, 102, 181, 335, 610, 898
PsiI	TTATAA	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	3 cut(s)	370, 701, 1007
PstNI	CAGNNNCTG	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	2 cut(s)	182, 272
RsaI	GTAC	2 cut(s)	949, 1160
RsaNI	GTAC	2 cut(s)	948, 1159
RseI	CAYNNNNRTG	1 cut(s)	48
SapI	GCTCTTC	2 cut(s)	235, 981
SaqAI	TTAA	4 cut(s)	794, 860, 1166, 1186
SatI	GCNGC	6 cut(s)	98, 101, 180, 334, 609, 897
Sau3AI	GATC	4 cut(s)	127, 291, 324, 571
Sau96I	GGNCC	3 cut(s)	370, 701, 1007
ScrFI	CCNGG	1 cut(s)	1094
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	2 cut(s)	370, 701
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	8 cut(s)	64, 138, 295, 460, 540, 547, 750, 1150
SsiI	CCGC	2 cut(s)	100, 658
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	1092
TaaI	ACNGT	1 cut(s)	1158
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	3 cut(s)	211, 748, 1143
TasI	AATT	8 cut(s)	64, 138, 295, 460, 540, 547, 750, 1150
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	4 cut(s)	220, 564, 669, 1129
Tru1I	TTAA	4 cut(s)	794, 860, 1166, 1186
Tru9I	TTAA	4 cut(s)	794, 860, 1166, 1186
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	5 cut(s)	97, 179, 333, 608, 896
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	17, 858
VpaK11BI	GGWCC	2 cut(s)	370, 701
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	2 cut(s)	64, 750
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.