Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008265

Physical Location & Seq

Genomic Coordinates Reverse (-)

7090464 .. 7093423

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06820.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGATCTGTTCAGAACTTTAATGCATTGGAGGAGAAGCTTGACGAGCTCCGAATCCGCCTTGGAAAGGCTAATGGTCGATCCTTTGAGAATTGTTGGTGTCGGTGCGGGTGCATGGGGCAGTGTTTTTGCTGCTGTGTTGCAGGATAGCTATGGTCAATTTCGAGACAAGGTTCAGATAAGGATATGGAGAAGAACGGGAAGAGCAGTTGATAGAGCCACAGCTGAACATCTTTTTGAAGTGATCAACTCGAGGGAGGATGTGTTGAGGAGGTTGATCCGGCGTTGTGCGTATTTGAAATATGTGGAGGCAAGGCTGGGGGATCGAACTCTTTATGCCGATGAGATTTTGAAAGATGGATTTTGTTTGAACATGATCGATACCCCTCTGTGTCCTTTGAAGGTTGTAACCAGTTTACAGGAGGCTGTTTGGGATGCTGACATTGTGGTGAATGGCTTGCCATCGACGGAAACAAAAGAGGTGTTTGAAGAGATAAGTAATTATTGGAAGGAAAGAATCACAGATCCTATTATCATCTCTTTGGCCAAAGGTATTGAAGCTGCACTGGAGCCTCTCCCGCATATCATAACTCCCACGCGAATTATTCATCGGGCGACTGGTGTACCTATAGAGAACATACTTTATTTGGGTGGCCCAAACATTGCCTCAGAAATCTACAACAAGGAATATGCTAATGCTCGAATATGCGGAGCTGAGAAGTGGAGAAAACCTCTTGCAAAATTCTTAAGGCAACCCCATTTTATTGTCTGGGACAATAGTGATCTTGTTACACATGAAGTCATGGGTGGCTTAAAGAATGTCTATGCCATCGGAGCAGGGATGGCAGCAGCTCTCACAAAGGAAAGTGCTACCAGCAAATCTGTATACTTTGCACATTGTACCTCGGAGATGATATTTATCACTCATTTGTTGGCGGAAGAGCCTGAGAAGCTTGCAGGGCCTTTGCTGGCTGACACATATGTAACCCTGTTGAAAGGTCGCAATGCGTGGTACGGGCAAATGTTAGCCAAAGGAGAACTAAACCGGGATATGGGTGAAAACATCAGTGGCAAAGGAATGATTCAGGGTGTCTCTGCAGTCAAGGCATTTTATGAACTTCTCAGTCAGTCGAGCCTAAATGTGTTGCATCCTGAGGAAAACAAGCCTGTTGCTCCCGTAGAGCTCTGCCCCATCTTGAAGACGCTATATAAAATATTGATAACAAGGGAGCAATCATCACAAGCTATTCTTCAAGCGTTGAGGGATGAAAACTTGATCGATCCCAGGGAACGCATTGAGATTGCGCAGAGCCATGTCTTCTATAGGCCTTCCCTTCTCGGACAGCCTTTGACTAGTTTCCGGTTGCAAGATAAAGTGGTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

462

Amino Acids

51.91

Weight (kDa)

7.15

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41540 AT2G41540 AT2G41540 AT2G41540
malus_domestica	MD12G1082400.v1.1 MD14G1077200.v1.1
prunus_persica	Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1 Prupe.7G053500_v2.0.a1
pyrus_communis	pycom12g06820 pycom14g06600
rosa_chinensis	RchiOBHm_Chr3g0483571
rosa_laevigata	RLG00000023266
rosa_multiflora	Rmu_sc0000555.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398210
rosa_rugosa	Rorug03G0207100 Rorug03G0207200
rosa_samantha	Rh3AG255300 Rh3BG292500 Rh3CG290100 Rh3DG286000
rosa_wichuraiana	Rw3G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1305
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	598
AciI	CCGC	5 cut(s)	57, 107, 578, 708, 935
AclWI	GGATC	6 cut(s)	12, 74, 271, 330, 518, 1274
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	3 cut(s)	624, 901, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	66, 1051
AflII	CTTAAG	1 cut(s)	745
AhlI	ACTAGT	1 cut(s)	1352
AjnI	CCWGG	1 cut(s)	1283
Alw21I	GWGCWC	2 cut(s)	50, 1185
Alw26I	GTCTC	2 cut(s)	159, 1096
AlwI	GGATC	6 cut(s)	12, 74, 271, 330, 518, 1274
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	4 cut(s)	543, 652, 959, 1325
ApeKI	GCWGC	4 cut(s)	131, 560, 845, 848
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	1306
AspS9I	GGNCC	2 cut(s)	653, 959
AsuC2I	CCSGG	1 cut(s)	1046
AsuHPI	GGTGA	2 cut(s)	460, 1067
AvaI	CYCGRG	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	1152
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	2 cut(s)	50, 1185
BbsI	GAAGAC	2 cut(s)	1205, 1309
Bbv12I	GWGCWC	2 cut(s)	50, 1185
BbvI	GCAGC	4 cut(s)	118, 547, 857, 860
BccI	CCATC	5 cut(s)	350, 469, 835, 836, 1199
BciT130I	CCWGG	1 cut(s)	1285
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	1046
BcoDI	GTCTC	2 cut(s)	159, 1096
BcuI	ACTAGT	1 cut(s)	1352
BfaI	CTAG	1 cut(s)	1353
BfmI	CTRYAG	3 cut(s)	627, 1095, 1321
BfrI	CTTAAG	1 cut(s)	745
BisI	GCNGC	4 cut(s)	132, 561, 846, 849
BlsI	GCNGC	4 cut(s)	133, 562, 847, 850
Bme1390I	CCNGG	2 cut(s)	1046, 1285
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	653, 959
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	1046, 1285
BmsI	GCATC	2 cut(s)	424, 1156
BpiI	GAAGAC	2 cut(s)	1205, 1309
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	1046
Bsa29I	ATCGAT	2 cut(s)	378, 1278
BsaBI	GATNNNNATC	1 cut(s)	917
BsaJI	CCNNGG	4 cut(s)	60, 903, 1283, 1284
BsaWI	WCCGGW	1 cut(s)	1359
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 1051
Bse1I	ACTGG	3 cut(s)	411, 570, 622
Bse21I	CCTNAGG	1 cut(s)	1152
Bse3DI	GCAATG	2 cut(s)	660, 1009
Bse8I	GATNNNNATC	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	1285
BseCI	ATCGAT	2 cut(s)	378, 1278
BseDI	CCNNGG	4 cut(s)	60, 903, 1283, 1284
BseGI	GGATG	5 cut(s)	265, 439, 846, 1147, 1270
BseJI	GATNNNNATC	1 cut(s)	917
BseLI	CCNNNNNNNGG	2 cut(s)	66, 1051
BseMI	GCAATG	2 cut(s)	660, 1009
BseMII	CTCAG	5 cut(s)	681, 705, 936, 1135, 1143
BseNI	ACTGG	3 cut(s)	411, 570, 622
BseRI	GAGGAG	2 cut(s)	46, 283
BseXI	GCAGC	4 cut(s)	118, 547, 857, 860
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	598
BshFI	GGCC	4 cut(s)	545, 654, 961, 1327
BshVI	ATCGAT	2 cut(s)	378, 1278
BsiHKAI	GWGCWC	2 cut(s)	50, 1185
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	280, 1045, 1360
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	2 cut(s)	66, 1051
BsmAI	GTCTC	2 cut(s)	159, 1096
BsmFI	GGGAC	1 cut(s)	785
BsnI	GGCC	4 cut(s)	545, 654, 961, 1327
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	50, 1185
BspACI	CCGC	5 cut(s)	57, 107, 578, 708, 935
BspANI	GGCC	4 cut(s)	545, 654, 961, 1327
BspCNI	CTCAG	5 cut(s)	680, 706, 937, 1134, 1144
BspDI	ATCGAT	2 cut(s)	378, 1278
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	6 cut(s)	12, 74, 271, 330, 518, 1274
BspQI	GCTCTTC	2 cut(s)	196, 933
BspTI	CTTAAG	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	660, 1009
BsrI	ACTGG	3 cut(s)	411, 570, 622
BssECI	CCNNGG	4 cut(s)	60, 903, 1283, 1284
BssNAI	GTATAC	1 cut(s)	886
BssT1I	CCWWGG	1 cut(s)	60
Bst1107I	GTATAC	1 cut(s)	886
Bst2UI	CCWGG	1 cut(s)	1285
Bst6I	CTCTTC	3 cut(s)	196, 483, 933
BstAFI	CTTAAG	1 cut(s)	745
BstC8I	GCNNGC	3 cut(s)	458, 954, 969
BstDEI	CTNAG	5 cut(s)	667, 714, 945, 1121, 1152
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	5 cut(s)	265, 439, 846, 1147, 1270
BstFNI	CGCG	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	1306
BstMAI	GTCTC	2 cut(s)	159, 1096
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 577, 833, 842, 949, 958, 1103
BstNI	CCWGG	1 cut(s)	1285
BstSCI	CCNGG	2 cut(s)	1044, 1283
BstSFI	CTRYAG	3 cut(s)	627, 1095, 1321
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	118, 547, 857, 860
BstV2I	GAAGAC	2 cut(s)	1205, 1309
BstX2I	RGATCY	2 cut(s)	4, 523
BstYI	RGATCY	2 cut(s)	4, 523
BstZ17I	GTATAC	1 cut(s)	886
Bsu15I	ATCGAT	2 cut(s)	378, 1278
Bsu36I	CCTNAGG	1 cut(s)	1152
BsuRI	GGCC	4 cut(s)	545, 654, 961, 1327
BsuTUI	ATCGAT	2 cut(s)	378, 1278
BtsCI	GGATG	5 cut(s)	265, 439, 846, 1147, 1270
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	127, 563, 1072
Cac8I	GCNNGC	3 cut(s)	458, 954, 969
CfoI	GCGC	1 cut(s)	1306
Cfr13I	GGNCC	2 cut(s)	653, 959
ClaI	ATCGAT	2 cut(s)	378, 1278
CseI	GACGC	1 cut(s)	1210
Csp6I	GTAC	3 cut(s)	623, 900, 1012
CviAII	CATG	5 cut(s)	114, 373, 794, 802, 1313
CviQI	GTAC	3 cut(s)	623, 900, 1012
DdeI	CTNAG	5 cut(s)	667, 714, 945, 1121, 1152
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	196, 483, 933
EarI	CTCTTC	3 cut(s)	196, 483, 933
EciI	GGCGGA	2 cut(s)	46, 950
Ecl136II	GAGCTC	2 cut(s)	48, 1183
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	1327
Eco24I	GRGCYC	2 cut(s)	50, 1185
Eco53kI	GAGCTC	2 cut(s)	48, 1183
Eco81I	CCTNAGG	1 cut(s)	1152
Eco88I	CYCGRG	1 cut(s)	250
EcoICRI	GAGCTC	2 cut(s)	48, 1183
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	959
EcoRII	CCWGG	1 cut(s)	1283
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	50, 1185
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	117, 376, 797, 805, 1316
FalI	AAGNNNNNCTT	2 cut(s)	1233, 1265
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	5 cut(s)	113, 372, 793, 801, 1312
FauI	CCCGC	2 cut(s)	100, 585
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	4 cut(s)	132, 561, 846, 849
FokI	GGATG	5 cut(s)	272, 446, 853, 1134, 1277
FriOI	GRGCYC	2 cut(s)	50, 1185
Fsp4HI	GCNGC	4 cut(s)	132, 561, 846, 849
FspBI	CTAG	1 cut(s)	1353
FspI	TGCGCA	1 cut(s)	1305
GlaI	GCGC	1 cut(s)	1305
GluI	GCNGC	4 cut(s)	132, 561, 846, 849
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	545, 654, 961, 1327
HapII	CCGG	3 cut(s)	280, 1045, 1360
HgaI	GACGC	1 cut(s)	1210
HhaI	GCGC	1 cut(s)	1306
Hin1II	CATG	5 cut(s)	117, 376, 797, 805, 1316
Hin6I	GCGC	1 cut(s)	1304
HinP1I	GCGC	1 cut(s)	1304
HindIII	AAGCTT	2 cut(s)	37, 950
HinfI	GANTC	3 cut(s)	53, 516, 1081
HpaII	CCGG	3 cut(s)	280, 1045, 1360
HphI	GGTGA	2 cut(s)	460, 1067
Hpy166II	GTNNAC	3 cut(s)	416, 623, 886
Hpy188I	TCNGA	7 cut(s)	14, 52, 177, 670, 833, 907, 1340
Hpy188III	TCNNGA	3 cut(s)	164, 1151, 1195
Hpy8I	GTNNAC	3 cut(s)	416, 623, 886
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	4 cut(s)	394, 502, 1338, 1343
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 577, 833, 842, 949, 958, 1103
HpyF3I	CTNAG	5 cut(s)	667, 714, 945, 1121, 1152
Hsp92II	CATG	5 cut(s)	117, 376, 797, 805, 1316
HspAI	GCGC	1 cut(s)	1304
Ksp22I	TGATCA	1 cut(s)	243
LguI	GCTCTTC	2 cut(s)	196, 933
LmnI	GCTCC	6 cut(s)	53, 568, 710, 833, 1177, 1228
Lsp1109I	GCAGC	4 cut(s)	118, 547, 857, 860
LweI	GCATC	2 cut(s)	424, 1156
MaeI	CTAG	1 cut(s)	1353
MaeIII	GTNAC	3 cut(s)	406, 787, 982
MboII	GAAGA	7 cut(s)	204, 213, 500, 950, 1210, 1241, 1309
MflI	RGATCY	2 cut(s)	4, 523
MhlI	GDGCHC	2 cut(s)	50, 1185
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	5 cut(s)	90, 158, 499, 600, 740
MluNI	TGGCCA	1 cut(s)	545
Mox20I	TGGCCA	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	3 cut(s)	20, 746, 812
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	745
MspI	CCGG	3 cut(s)	280, 1045, 1360
MspR9I	CCNGG	2 cut(s)	1046, 1285
MvaI	CCWGG	1 cut(s)	1285
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	7 cut(s)	45, 577, 833, 842, 949, 958, 1103
NciI	CCSGG	1 cut(s)	1046
NdeI	CATATG	1 cut(s)	979
NlaIII	CATG	5 cut(s)	117, 376, 797, 805, 1316
NlaIV	GGNNCC	1 cut(s)	570
NsbI	TGCGCA	1 cut(s)	1305
NsiI	ATGCAT	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	250
PasI	CCCWGGG	1 cut(s)	1284
PceI	AGGCCT	1 cut(s)	1327
PciSI	GCTCTTC	2 cut(s)	196, 933
PfeI	GAWTC	3 cut(s)	53, 516, 1081
PkrI	GCNGC	4 cut(s)	133, 562, 847, 850
Psp124BI	GAGCTC	2 cut(s)	50, 1185
Psp6I	CCWGG	1 cut(s)	1283
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	1283
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	653, 959
PspXI	VCTCGAGB	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	4, 523
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	3 cut(s)	624, 901, 1013
RsaNI	GTAC	3 cut(s)	623, 900, 1012
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	2 cut(s)	50, 1185
SapI	GCTCTTC	2 cut(s)	196, 933
SaqAI	TTAA	3 cut(s)	20, 746, 812
SatI	GCNGC	4 cut(s)	132, 561, 846, 849
Sau96I	GGNCC	2 cut(s)	653, 959
ScrFI	CCNGG	2 cut(s)	1046, 1285
SduI	GDGCHC	2 cut(s)	50, 1185
SfaNI	GCATC	2 cut(s)	424, 1156
SfcI	CTRYAG	3 cut(s)	627, 1095, 1321
Sfr274I	CTCGAG	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	250, 745
SmoI	CTYRAG	2 cut(s)	250, 745
SpeI	ACTAGT	1 cut(s)	1352
Sse9I	AATT	5 cut(s)	90, 158, 499, 600, 740
SseBI	AGGCCT	1 cut(s)	1327
SsiI	CCGC	5 cut(s)	57, 107, 578, 708, 935
SspI	AATATT	1 cut(s)	1215
SspMI	CTAG	1 cut(s)	1353
SstI	GAGCTC	2 cut(s)	50, 1185
StuI	AGGCCT	1 cut(s)	1327
StyD4I	CCNGG	2 cut(s)	1044, 1283
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	9 cut(s)	78, 163, 251, 325, 378, 464, 700, 1130, 1278
TasI	AATT	5 cut(s)	90, 158, 499, 600, 740
TfiI	GAWTC	3 cut(s)	53, 516, 1081
Tru1I	TTAA	3 cut(s)	20, 746, 812
Tru9I	TTAA	3 cut(s)	20, 746, 812
TscAI	CASTG	3 cut(s)	127, 570, 1072
TseI	GCWGC	4 cut(s)	131, 560, 845, 848
TspDTI	ATGAA	4 cut(s)	596, 810, 1128, 1281
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	3 cut(s)	127, 570, 1072
Vha464I	CTTAAG	1 cut(s)	745
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	740
XhoI	CTCGAG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	1 cut(s)	1353
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.