Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005404

Physical Location & Seq

Genomic Coordinates Reverse (-)

17347304 .. 17355103

Gene Structure 7800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCTCCATTCTTCGTCGAAGCTTCTGGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCAGAGAAATTTAGATCAGTTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTGAGGAACGAAGCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGCAGAGCAACTAGCTCGTGATCTTAAATCTTTCGAGCTCAAGACAACATTTGAGGATGTGTTCCCTGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATCAGCTATTCAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAAAGTGTTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTACCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTGGGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCTGGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACTTAACACTTCAAGAGAACGAGGCATGCCATTTAGACCTGCTATGTGTTTTAAGGACGCTTATGATACTCTTGGTGCTGAGGTAACTCGTGGAAAATCAGTCAACATGCAGAAAATATGGCAGCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGATGGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGACACAATTCAAACTCACCCTACACAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAGAATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAGTTTTAGATTTTGATTCAACTGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCGAACTGGGTATTATGAGGAGGCTAGGGAAATTGCTCGGTCAACACGGTCATCTCAGCAATTTGCACCACTGCTTACAGAGTGGATTACCACAGATGGTATGGTGGCTGCAGAGTCTGCAGCTATTGCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGCGATCGGTTGGGTCGAACAGCTTATGACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAATTGAGCGCATACTGAGGGATCTATCTACACTCTTTAACACAATTGAAGATTTCTTATGGTTCAAATTGTCATGCATAAGAGACGTCACTGGTGGATCCTCATCTGTGGTCCTGAATGATGGCCTTGCGCCATACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTTGAGCCTTCATACTACACAAAGAATGGAAAAGACCCCTTGGTATATCCATATGTTTTGCTTCTCAGTGTTCAGTTGCTACCGGCCATCATGCACTTATCCAAAGAAGCAGGAGACGGAGGGTATAATATTGATGCTGTTCATATAGCTATTTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCTGGGACTGGCCACAAACTAAGTGTGATGGATTCTAATGCTGAGGCATCTAGCATGATTAGGCAATATGGGTCAATGTTTTTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCTACTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAAAGGCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGTATTTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGGATTATATGACAAATCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGAGACTATAAACAAGTGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGTGAAAGTAGAACATCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATATTACCCTGAAGTTAGTCTCCAGGAAAGAGAGCGAGTGATGGAACAAGAAACCATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAATCATCTGGATGCTTTGAGAGAAATTGCAAAACTTCCATTTCTTCATCTTGATCCAAGAATGCCCGATGCAACCGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGACTTGTGTCCCGGACCTGCTCAAAGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATCCGTGCCATGAGATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCTCGTGACTTGTACGAGAAGGTGGCTCGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0030054 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0055044 GO:0065003 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

861

Amino Acids

96.61

Weight (kDa)

6.73

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	248 - 836	4.8e-102	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41620 AT3G57350
fragaria_vesca	FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390
malus_domestica	MD00G1107400.v1.1 MD12G1080600.v1.1 MD14G1076700.v1.1
prunus_persica	Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1
pyrus_communis	pycom12g06710 pycom14g06500
rosa_chinensis	RchiOBHm_Chr3g0483381
rosa_laevigata	RLG00000023288
rosa_multiflora	Rmu_sc0006349.1_g000012
rosa_roxburghii	Rroxscaffold_6G00398400
rosa_rugosa	Rorug03G0205600
rosa_samantha	Rh3AG254000 Rh3CG288100 Rh3DG283900
rosa_wichuraiana	Rw0G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AatII	GACGTC	1 cut(s)	1383
Acc36I	ACCTGC	3 cut(s)	321, 685, 2442
AccB7I	CCANNNNNTGG	1 cut(s)	2293
AccII	CGCG	1 cut(s)	830
AciI	CCGC	2 cut(s)	2070, 2382
AcoI	YGGCCR	2 cut(s)	1548, 1660
AcsI	RAATTY	5 cut(s)	106, 869, 931, 942, 1463
AcuI	CTGAAG	6 cut(s)	83, 428, 1430, 1665, 1880, 2229
AcyI	GRCGYC	1 cut(s)	1380
AfaI	GTAC	2 cut(s)	2469, 2561
AfiI	CCNNNNNNNGG	6 cut(s)	289, 319, 904, 1756, 2130, 2293
AflIII	ACRYGT	1 cut(s)	2453
AgsI	TTSAA	6 cut(s)	305, 651, 890, 999, 1343, 1360
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	559, 2220
AjuI	GAANNNNNNNTTGG	2 cut(s)	1929, 1961
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	7 cut(s)	966, 1371, 1572, 1969, 2075, 2183, 2222
AlwNI	CAGNNNCTG	2 cut(s)	1175, 1870
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	5 cut(s)	822, 1417, 1548, 1660, 2546
ApoI	RAATTY	5 cut(s)	106, 869, 931, 942, 1463
AspLEI	GCGC	3 cut(s)	1305, 1426, 2402
AspS9I	GGNCC	3 cut(s)	823, 1405, 2431
AsuC2I	CCSGG	1 cut(s)	2429
AsuHPI	GGTGA	4 cut(s)	794, 887, 1943, 2153
AsuII	TTCGAA	2 cut(s)	376, 812
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	2 cut(s)	1405, 2431
AxyI	CCTNAGG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	1662
BamHI	GGATCC	1 cut(s)	1391
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	4 cut(s)	234, 572, 726, 2550
Bbv12I	GWGCWC	1 cut(s)	258
BbvCI	CCTCAGC	4 cut(s)	288, 452, 717, 1692
BcgI	CGANNNNNNTGC	8 cut(s)	215, 249, 553, 587, 926, 960, 2262, 2296
BciT130I	CCWGG	2 cut(s)	561, 2222
BciVI	GTATCC	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	2429
BcoDI	GTCTC	7 cut(s)	966, 1371, 1572, 1969, 2075, 2183, 2222
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	6 cut(s)	192, 230, 521, 1083, 1701, 1968
BfmI	CTRYAG	3 cut(s)	1167, 1176, 1788
BfuAI	ACCTGC	3 cut(s)	321, 685, 2442
BfuI	GTATCC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	1744
Bme1390I	CCNGG	3 cut(s)	561, 2222, 2429
Bme18I	GGWCC	2 cut(s)	1405, 2431
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	3 cut(s)	823, 1405, 2431
BmiI	GGNNCC	2 cut(s)	1285, 1393
BmrFI	CCNGG	3 cut(s)	561, 2222, 2429
BmrI	ACTGGG	1 cut(s)	1074
BmsI	GCATC	8 cut(s)	994, 1196, 1588, 1706, 1744, 2308, 2365, 2411
BmuI	ACTGGG	1 cut(s)	1074
BoxI	GACNNNNGTC	1 cut(s)	2423
BplI	GAGNNNNNCTC	2 cut(s)	2389, 2421
BpmI	CTGGAG	3 cut(s)	83, 543, 2204
Bpu10I	CCTNAGC	5 cut(s)	288, 452, 717, 1211, 1692
Bpu14I	TTCGAA	2 cut(s)	376, 812
BpuEI	CTTGAG	4 cut(s)	125, 242, 2207, 2288
BpuMI	CCSGG	1 cut(s)	2429
Bsa29I	ATCGAT	1 cut(s)	2282
BsaBI	GATNNNNATC	1 cut(s)	1396
BsaHI	GRCGYC	1 cut(s)	1380
BsaJI	CCNNGG	3 cut(s)	1503, 2076, 2125
BsaWI	WCCGGW	1 cut(s)	2538
Bsc4I	CCNNNNNNNGG	6 cut(s)	289, 319, 904, 1756, 2130, 2293
Bse118I	RCCGGY	2 cut(s)	526, 1546
Bse1I	ACTGG	4 cut(s)	1069, 1390, 1663, 2549
Bse21I	CCTNAGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	1396
BseBI	CCWGG	2 cut(s)	561, 2222
BseCI	ATCGAT	1 cut(s)	2282
BseDI	CCNNGG	3 cut(s)	1503, 2076, 2125
BseGI	GGATG	6 cut(s)	280, 825, 1221, 1444, 2143, 2323
BseJI	GATNNNNATC	1 cut(s)	1396
BseLI	CCNNNNNNNGG	6 cut(s)	289, 319, 904, 1756, 2130, 2293
BseNI	ACTGG	4 cut(s)	1069, 1390, 1663, 2549
BseRI	GAGGAG	3 cut(s)	84, 425, 1091
BseYI	CCCAGC	1 cut(s)	2513
BsgI	GTGCAG	1 cut(s)	1983
Bsh1236I	CGCG	1 cut(s)	830
Bsh1285I	CGRYCG	1 cut(s)	1225
BshFI	GGCC	5 cut(s)	824, 1419, 1550, 1662, 2548
BshVI	ATCGAT	1 cut(s)	2282
BsiEI	CGRYCG	1 cut(s)	1225
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	4 cut(s)	527, 1547, 2429, 2539
BslFI	GGGAC	3 cut(s)	1669, 1812, 2411
BslI	CCNNNNNNNGG	6 cut(s)	289, 319, 904, 1756, 2130, 2293
BsmAI	GTCTC	7 cut(s)	966, 1371, 1572, 1969, 2075, 2183, 2222
BsmBI	CGTCTC	2 cut(s)	1371, 1572
BsmFI	GGGAC	3 cut(s)	1669, 1812, 2411
BsmI	GAATGC	1 cut(s)	2373
BsnI	GGCC	5 cut(s)	824, 1419, 1550, 1662, 2548
BsoBI	CYCGRG	1 cut(s)	543
Bsp119I	TTCGAA	2 cut(s)	376, 812
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp68I	TCGCGA	1 cut(s)	830
BspACI	CCGC	2 cut(s)	2070, 2382
BspANI	GGCC	5 cut(s)	824, 1419, 1550, 1662, 2548
BspDI	ATCGAT	1 cut(s)	2282
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	2 cut(s)	325, 598
BspLI	GGNNCC	2 cut(s)	1285, 1393
BspMAI	CTGCAG	2 cut(s)	1171, 1180
BspMI	ACCTGC	3 cut(s)	321, 685, 2442
BspT104I	TTCGAA	2 cut(s)	376, 812
BsrFI	RCCGGY	2 cut(s)	526, 1546
BsrI	ACTGG	4 cut(s)	1069, 1390, 1663, 2549
BssAI	RCCGGY	2 cut(s)	526, 1546
BssECI	CCNNGG	3 cut(s)	1503, 2076, 2125
BssNI	GRCGYC	1 cut(s)	1380
BssSI	CACGAG	4 cut(s)	234, 572, 726, 2550
BssT1I	CCWWGG	2 cut(s)	1503, 2076
Bst2BI	CACGAG	4 cut(s)	234, 572, 726, 2550
Bst2UI	CCWGG	2 cut(s)	561, 2222
Bst4CI	ACNGT	5 cut(s)	1107, 1433, 1759, 1789, 1983
Bst6I	CTCTTC	3 cut(s)	102, 809, 2045
BstACI	GRCGYC	1 cut(s)	1380
BstAPI	GCANNNNNTGC	3 cut(s)	1175, 1184, 1778
BstBI	TTCGAA	2 cut(s)	376, 812
BstC8I	GCNNGC	4 cut(s)	69, 665, 1058, 2527
BstDSI	CCRYGG	1 cut(s)	2125
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	6 cut(s)	280, 825, 1221, 1444, 2143, 2323
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	3 cut(s)	1305, 1426, 2402
BstMAI	GTCTC	7 cut(s)	966, 1371, 1572, 1969, 2075, 2183, 2222
BstMCI	CGRYCG	1 cut(s)	1225
BstMWI	GCNNNNNNNGC	8 cut(s)	64, 836, 1175, 1184, 1300, 1778, 1864, 2069
BstNI	CCWGG	2 cut(s)	561, 2222
BstNSI	RCATGY	2 cut(s)	667, 748
BstPAI	GACNNNNGTC	1 cut(s)	2423
BstSCI	CCNGG	3 cut(s)	559, 2220, 2427
BstSFI	CTRYAG	3 cut(s)	1167, 1176, 1788
BstUI	CGCG	1 cut(s)	830
BstX2I	RGATCY	5 cut(s)	920, 1315, 1391, 1744, 2501
BstYI	RGATCY	5 cut(s)	920, 1315, 1391, 1744, 2501
Bsu15I	ATCGAT	1 cut(s)	2282
Bsu36I	CCTNAGG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	5 cut(s)	824, 1419, 1550, 1662, 2548
BsuTUI	ATCGAT	1 cut(s)	2282
BtgI	CCRYGG	1 cut(s)	2125
BtsCI	GGATG	6 cut(s)	280, 825, 1221, 1444, 2143, 2323
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	4 cut(s)	1127, 1383, 1537, 2475
BtuMI	TCGCGA	1 cut(s)	830
BveI	ACCTGC	3 cut(s)	321, 685, 2442
Cac8I	GCNNGC	4 cut(s)	69, 665, 1058, 2527
CaiI	CAGNNNCTG	2 cut(s)	1175, 1870
CciI	TCATGA	2 cut(s)	325, 598
CfoI	GCGC	3 cut(s)	1305, 1426, 2402
Cfr10I	RCCGGY	2 cut(s)	526, 1546
Cfr13I	GGNCC	3 cut(s)	823, 1405, 2431
ClaI	ATCGAT	1 cut(s)	2282
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	2468, 2560
CviQI	GTAC	2 cut(s)	2468, 2560
EaeI	YGGCCR	2 cut(s)	1548, 1660
Eam1104I	CTCTTC	3 cut(s)	102, 809, 2045
EarI	CTCTTC	3 cut(s)	102, 809, 2045
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	1503, 2076
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	1405, 2431
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	6 cut(s)	83, 428, 1430, 1665, 1880, 2229
Eco81I	CCTNAGG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	559, 2220
EcoT14I	CCWWGG	2 cut(s)	1503, 2076
EcoT22I	ATGCAT	1 cut(s)	1373
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	1503, 2076
Esp3I	CGTCTC	2 cut(s)	1371, 1572
FalI	AAGNNNNNCTT	2 cut(s)	1929, 1961
FaqI	GGGAC	3 cut(s)	1669, 1812, 2411
FauNDI	CATATG	2 cut(s)	613, 1516
FokI	GGATG	6 cut(s)	287, 832, 1228, 1451, 2150, 2330
FriOI	GRGCYC	1 cut(s)	258
FspBI	CTAG	6 cut(s)	192, 230, 521, 1083, 1701, 1968
GlaI	GCGC	3 cut(s)	1304, 1425, 2401
GsaI	CCCAGC	1 cut(s)	2517
GsuI	CTGGAG	3 cut(s)	83, 543, 2204
HaeIII	GGCC	5 cut(s)	824, 1419, 1550, 1662, 2548
HapII	CCGG	4 cut(s)	527, 1547, 2429, 2539
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	3 cut(s)	1305, 1426, 2402
Hin1I	GRCGYC	1 cut(s)	1380
Hin6I	GCGC	3 cut(s)	1303, 1424, 2400
HinP1I	GCGC	3 cut(s)	1303, 1424, 2400
HincII	GTYRAC	3 cut(s)	518, 742, 1101
HindII	GTYRAC	3 cut(s)	518, 742, 1101
HindIII	AAGCTT	3 cut(s)	56, 379, 2578
HinfI	GANTC	9 cut(s)	213, 538, 788, 961, 995, 1172, 1682, 1879, 1964
HpaII	CCGG	4 cut(s)	527, 1547, 2429, 2539
HphI	GGTGA	4 cut(s)	794, 887, 1943, 2153
Hpy166II	GTNNAC	3 cut(s)	518, 742, 1101
Hpy188I	TCNGA	6 cut(s)	102, 447, 960, 1192, 1645, 2104
Hpy8I	GTNNAC	3 cut(s)	518, 742, 1101
Hpy99I	CGWCG	2 cut(s)	55, 298
HpyAV	CCTTC	9 cut(s)	87, 180, 452, 965, 1482, 1640, 1931, 2124, 2560
HpyCH4III	ACNGT	5 cut(s)	1107, 1433, 1759, 1789, 1983
HpyCH4IV	ACGT	3 cut(s)	433, 1380, 2453
HpyF10VI	GCNNNNNNNGC	8 cut(s)	64, 836, 1175, 1184, 1300, 1778, 1864, 2069
HpySE526I	ACGT	3 cut(s)	433, 1380, 2453
Hsp92I	GRCGYC	1 cut(s)	1380
HspAI	GCGC	3 cut(s)	1303, 1424, 2400
LmnI	GCTCC	4 cut(s)	64, 79, 172, 1916
LweI	GCATC	8 cut(s)	994, 1196, 1588, 1706, 1744, 2308, 2365, 2411
MaeI	CTAG	6 cut(s)	192, 230, 521, 1083, 1701, 1968
MaeII	ACGT	3 cut(s)	433, 1380, 2453
MaeIII	GTNAC	5 cut(s)	434, 721, 1381, 2043, 2552
MfeI	CAATTG	1 cut(s)	1338
MflI	RGATCY	5 cut(s)	920, 1315, 1391, 1744, 2501
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	1662
MluNI	TGGCCA	1 cut(s)	1662
MlyI	GAGTC	2 cut(s)	547, 1181
MmeI	TCCRAC	5 cut(s)	8, 99, 387, 907, 2115
Mox20I	TGGCCA	1 cut(s)	1662
Mph1103I	ATGCAT	1 cut(s)	1373
MscI	TGGCCA	1 cut(s)	1662
MseI	TTAA	5 cut(s)	243, 384, 642, 690, 1332
MslI	CAYNNNNRTG	3 cut(s)	861, 2005, 2316
Msp20I	TGGCCA	1 cut(s)	1662
MspA1I	CMGCKG	2 cut(s)	2072, 2384
MspI	CCGG	4 cut(s)	527, 1547, 2429, 2539
MspR9I	CCNGG	3 cut(s)	561, 2222, 2429
MunI	CAATTG	1 cut(s)	1338
Mva1269I	GAATGC	1 cut(s)	2373
MvaI	CCWGG	2 cut(s)	561, 2222
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	8 cut(s)	64, 836, 1175, 1184, 1300, 1778, 1864, 2069
NciI	CCSGG	1 cut(s)	2429
NdeI	CATATG	2 cut(s)	613, 1516
NlaIV	GGNNCC	2 cut(s)	1285, 1393
NmuCI	GTSAC	3 cut(s)	434, 1381, 2552
NruI	TCGCGA	1 cut(s)	830
NsiI	ATGCAT	1 cut(s)	1373
NspI	RCATGY	2 cut(s)	667, 748
NspV	TTCGAA	2 cut(s)	376, 812
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	543
PagI	TCATGA	2 cut(s)	325, 598
PcsI	WCGNNNNNNNCGW	2 cut(s)	1231, 2175
PctI	GAATGC	1 cut(s)	2373
PfeI	GAWTC	7 cut(s)	213, 788, 961, 995, 1682, 1879, 1964
PflMI	CCANNNNNTGG	1 cut(s)	2293
PfoI	TCCNGGA	2 cut(s)	2220, 2427
Ple19I	CGATCG	1 cut(s)	1225
PleI	GAGTC	2 cut(s)	546, 1180
PpsI	GAGTC	2 cut(s)	546, 1180
PshAI	GACNNNNGTC	1 cut(s)	2423
PsiI	TTATAA	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	559, 2220
PspFI	CCCAGC	1 cut(s)	2513
PspGI	CCWGG	2 cut(s)	559, 2220
PspN4I	GGNNCC	2 cut(s)	1285, 1393
PspPI	GGNCC	3 cut(s)	823, 1405, 2431
PspXI	VCTCGAGB	1 cut(s)	543
PstI	CTGCAG	2 cut(s)	1171, 1180
PstNI	CAGNNNCTG	2 cut(s)	1175, 1870
PsuI	RGATCY	5 cut(s)	920, 1315, 1391, 1744, 2501
PvuI	CGATCG	1 cut(s)	1225
RruI	TCGCGA	1 cut(s)	830
RsaI	GTAC	2 cut(s)	2469, 2561
RsaNI	GTAC	2 cut(s)	2468, 2560
RseI	CAYNNNNRTG	3 cut(s)	861, 2005, 2316
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	243, 384, 642, 690, 1332
Sau96I	GGNCC	3 cut(s)	823, 1405, 2431
SchI	GAGTC	2 cut(s)	547, 1181
ScrFI	CCNGG	3 cut(s)	561, 2222, 2429
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	8 cut(s)	994, 1196, 1588, 1706, 1744, 2308, 2365, 2411
SfcI	CTRYAG	3 cut(s)	1167, 1176, 1788
Sfr274I	CTCGAG	1 cut(s)	543
SfuI	TTCGAA	2 cut(s)	376, 812
SinI	GGWCC	2 cut(s)	1405, 2431
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	3 cut(s)	861, 2005, 2316
SmlI	CTYRAG	5 cut(s)	140, 257, 543, 2186, 2267
SmoI	CTYRAG	5 cut(s)	140, 257, 543, 2186, 2267
SpeI	ACTAGT	1 cut(s)	520
SphI	GCATGC	1 cut(s)	667
SsiI	CCGC	2 cut(s)	2070, 2382
SspI	AATATT	2 cut(s)	1594, 2201
SspMI	CTAG	6 cut(s)	192, 230, 521, 1083, 1701, 1968
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	559, 2220, 2427
StyI	CCWWGG	2 cut(s)	1503, 2076
TaaI	ACNGT	5 cut(s)	1107, 1433, 1759, 1789, 1983
TaiI	ACGT	3 cut(s)	436, 1383, 2456
TaqII	GACCGA	1 cut(s)	1086
TfiI	GAWTC	7 cut(s)	213, 788, 961, 995, 1682, 1879, 1964
Tru1I	TTAA	5 cut(s)	243, 384, 642, 690, 1332
Tru9I	TTAA	5 cut(s)	243, 384, 642, 690, 1332
TscAI	CASTG	4 cut(s)	1134, 1390, 1537, 2482
TseFI	GTSAC	3 cut(s)	434, 1381, 2552
Tsp45I	GTSAC	3 cut(s)	434, 1381, 2552
TspDTI	ATGAA	7 cut(s)	314, 342, 413, 587, 1464, 1595, 2342
TspGWI	ACGGA	4 cut(s)	1596, 1624, 1755, 2480
TspRI	CASTG	4 cut(s)	1134, 1390, 1537, 2482
Van91I	CCANNNNNTGG	1 cut(s)	2293
VpaK11BI	GGWCC	2 cut(s)	1405, 2431
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	5 cut(s)	106, 869, 931, 942, 1463
XbaI	TCTAGA	1 cut(s)	1967
XceI	RCATGY	2 cut(s)	667, 748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	20, 1156
XhoI	CTCGAG	1 cut(s)	543
XspI	CTAG	6 cut(s)	192, 230, 521, 1083, 1701, 1968
ZraI	GACGTC	1 cut(s)	1381
Zsp2I	ATGCAT	1 cut(s)	1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.