Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005404

Physical Location & Seq

Genomic Coordinates Reverse (-)

29588344 .. 29596531

Gene Structure 8188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGGCGACCGATCAAAATCTGAGCAGCTGGACCGATCTCCTCCACTCCTCCACCAAGCTTCTCGAACAAGCCGCTCCCTCCGCTCAGTTTCCCCCTCTTCAGGTTAGAAATTTGGACCAGTTGGAAACATTATCTAAGAAGCTCAAGGCGAAAACTCTTCGAAATGAGGCTCCTCAACAATCCATTGCTGCCACGAGGCTTCTTGCTCGTGAGGGTCTAAACGCAGAGCAGCTTGCACGAGACCTTAAGTCTTTTGAATTGAAGACAACATTTGAGGATGTTTTTCCTGCCGAAGCAACGAGCATTGAAGACTATCTGCAGCAGGTCCATGAAATGGCAATGGTCTCAGCTGTTCAAGAAGCTCAGAAGGATAACCTTAGAAGCTTTAATGATCATATGTTAAAAGTTTTGGAGGAGGATTGGCAGATGGAAAAACGTGATTTCCTTCAAAGCTTAAGCCAGATTTCAACATTACCCAGGACTAATGTGACTTATACTGTCAGCGGTGGTAGTCGTCCTGGTCAAGTAGCATCCATTGCTTCCAGCCCTCATGTTTCATCTGGTCCATCTAGCATGGAGCTTGTACCCCTAGATAGCAAGCCCATCCTTGAGAGAAAAGCCTCTGTTTATGCGGAAGTTGTAAAGAATCTCAACAACGCAAGGCAGCGCAGTTTACCTTTTAAGCCCGCTACAGCTTTCAAGGGTGCGTATGAAAGTTTGGGCCTTCATGCATCTGGAGGAAAATCAGTGAACATGCAGAAGATATGGCACCTTCTTCAGACGTTGCTGAGTGAAGATATAACCATACAACGAAGTGTTTCAAAAAAGATGTCATTAGTTATTGGTGCAAGGCGCCACCTGGAATGGGGGCATGAAAAATACATCATGGATACAATTCAAAGTCACCCTGCACAGGCTGCTCTTGGAGGGGTTGTTGGAAATTTACAAAGAATTCGAGCCTTCCTTCGGATTCGTTTAAGAGATTATGGAGTTCTAGATTTTGATGCAGTCGATTCGCGGAGGCAGCCTCCTGTTGATACCACTTGGCAGCAGATCTACTTTTGCATGAGAACTGGCTATTATGATGAAGCAAGGTCTGTTGCTTTGTCATCTCGTGCTTCAAACCACTTTGCTCCTCTGCTCACGGACTGGATTAATACTGGAGGCATGGTGCCTGCCGAGATTGCAACTGCGGCATCTGAGGAATGTGAAAAAATTCTAAGAATTGGTGATCGTGCTGGTCGACCTGCATATGACAAGAAAAAGTTGTTACTGTATGCTCTCATATCTGGTTCTCGTAGGCAAATCGACCGCCTGCTACGTGATCTACCAACTCTTTTCAACACTATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTAAGAGACTGCCCAGTTGGAGCTACATCCATTGTTATGAATGAGAGCTTAGTACCATACACGTTGGAAGATTTGCAGGCTTACTTAAATAAATTTGACCCATCATATTACACAAAAAACGGAAAGGACCCTCTGGTATATCCATACATTCTGCTTTTAAGCATCCAGTTGATACCAGCTGTTGTATACTTGTCTCAAGAATCTGGAGACGAGGGATACAACATTGATGCTGCCCACATATCAATTGTGTTAGCAGACCATGGGGTCCTTTCTGAAGGTGCTGGAGCTGGACAAAAGATGGGAGTGATGGATGCTTATGCAGAGGCATCTAGCATCATCAGGCAGTATGGATCTGCATATTTACGTGTTGGTAATCTATCAATGGCATTAGAATATTATGCACAGGCTGCTGCTGCAGTTGGTGGTGGCCATTTGTCATGGTCTGGAAGAGGTAATGTGGATCAGCAAAGGCAAAGAAATTTGATGCTGAAGCAACTACTTACAGAGCTATTGTTGCGGGATGGTGGGGTATATCTTTTGCTTGGTTCAAGAGGTGCTGGCGAAGAAGGTGAACTGAGACGATTTTTGATTGATGTAAAAGCAAGACAACAATTTCTGCTTGAAGCCGCTCACCATTGTCAGGAAACTGGGTTGTATGAAAAATCCATAGAAATTCAGAAACGAATAGGGGCATTCTCAATGGCATTGGATACCATTAACAAGTGCCTCTCAGAAGCAATTTGTGCCTTGTCACGTGGCAGATCGGATGGGGAGAGTCGAACTGCTGGTCTCATTCATTCTGGAAATGAGATCTTGGAGATGGACAAATATTCATCTGAAGTTAGTCTTCAAGAGAGGGAGAGTGTTTTAGAGCAGCAGACTGTTTTAAGACAACTTGAGGCCATACTGTCAATACATAAGTTGGCAAGACTAGGTCATTATGTTGATGCTTTGAGGGAGGTTGCCAAACTTCAATTCCTTCCTTTAGATCCTCGAACACCAGATACTACCACTGACGTGTTCAAGAATTTGAGTCCCCATGTCCAAGTTTGTGTTCCGGACCTCTTGAAAGTTGCACTGACTTGTCTGGACAACATGGTGGATTCTGATGGATTACTCCGAGCCTTGAGGGCTAAGATTGCTAGCTTCATTGCAAATAATTCCAATAGAAATTGGCCACGTGATTTGTACGAAAAACTTGCCCGGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

864

Amino Acids

96.24

Weight (kDa)

6.7

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	251 - 856	5.7e-103	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41620 AT3G57350
fragaria_vesca	FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390
malus_domestica	MD00G1107400.v1.1 MD12G1080600.v1.1 MD14G1076700.v1.1
prunus_persica	Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1
pyrus_communis	pycom12g06710 pycom14g06500
rosa_chinensis	RchiOBHm_Chr3g0483381
rosa_laevigata	RLG00000023288
rosa_multiflora	Rmu_sc0006349.1_g000012
rosa_roxburghii	Rroxscaffold_6G00398400
rosa_rugosa	Rorug03G0205600
rosa_samantha	Rh3AG254000 Rh3CG288100 Rh3DG283900
rosa_wichuraiana	Rw0G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1643
Acc36I	ACCTGC	2 cut(s)	313, 1255
AccB1I	GGYRCC	3 cut(s)	768, 852, 1171
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	3 cut(s)	74, 83, 2009
AccI	GTMKAC	2 cut(s)	1243, 1566
AccII	CGCG	1 cut(s)	1018
AccIII	TCCGGA	1 cut(s)	2437
AclWI	GGATC	3 cut(s)	1738, 1848, 2363
AcoI	YGGCCR	2 cut(s)	1807, 2555
AcsI	RAATTY	8 cut(s)	109, 940, 951, 1215, 1472, 1858, 2052, 2407
AcuI	CTGAAG	5 cut(s)	83, 761, 1674, 1889, 2238
AcvI	CACGTG	2 cut(s)	2135, 2561
AcyI	GRCGYC	1 cut(s)	853
AfaI	GTAC	3 cut(s)	585, 1434, 2570
AfiI	CCNNNNNNNGG	6 cut(s)	100, 334, 865, 913, 966, 2020
AflII	CTTAAG	2 cut(s)	245, 454
AflIII	ACRYGT	3 cut(s)	1440, 1744, 2397
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	2398
AjnI	CCWGG	3 cut(s)	476, 517, 858
AjuI	GAANNNNNNNTTGG	4 cut(s)	2339, 2371, 2418, 2450
AleI	CACNNNNGTG	1 cut(s)	2396
Alw26I	GTCTC	7 cut(s)	234, 349, 1380, 1578, 1581, 1951, 2174
AlwI	GGATC	3 cut(s)	1738, 1848, 2363
Aor13HI	TCCGGA	1 cut(s)	2437
AoxI	GGCC	4 cut(s)	721, 1807, 2280, 2555
ApoI	RAATTY	8 cut(s)	109, 940, 951, 1215, 1472, 1858, 2052, 2407
ArsI	GACNNNNNNTTYG	4 cut(s)	815, 847, 2152, 2184
AseI	ATTAAT	1 cut(s)	1155
Asp700I	GAANNNNTTC	2 cut(s)	817, 1215
AspLEI	GCGC	2 cut(s)	669, 855
AspS9I	GGNCC	8 cut(s)	30, 115, 325, 563, 721, 1507, 1645, 2440
AsuC2I	CCSGG	1 cut(s)	2584
AsuHPI	GGTGA	4 cut(s)	896, 1241, 1961, 2003
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	2522
AvaII	GGWCC	7 cut(s)	30, 115, 325, 563, 1507, 1645, 2440
BalI	TGGCCA	2 cut(s)	1809, 2557
BanI	GGYRCC	3 cut(s)	768, 852, 1171
BauI	CACGAG	4 cut(s)	193, 207, 237, 1113
BbrPI	CACGTG	2 cut(s)	2135, 2561
BbsI	GAAGAC	3 cut(s)	269, 315, 2219
BcgI	CGANNNNNNTGC	4 cut(s)	996, 1030, 2561, 2595
BciT130I	CCWGG	3 cut(s)	478, 519, 860
BciVI	GTATCC	3 cut(s)	883, 1589, 2083
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	2584
BcoDI	GTCTC	7 cut(s)	234, 349, 1380, 1578, 1581, 1951, 2174
BfaI	CTAG	6 cut(s)	570, 590, 995, 1710, 2312, 2523
BfmI	CTRYAG	4 cut(s)	317, 690, 1347, 1794
BfoI	RGCGCY	1 cut(s)	856
BfrI	CTTAAG	2 cut(s)	245, 454
BfuAI	ACCTGC	2 cut(s)	313, 1255
BfuI	GTATCC	3 cut(s)	883, 1589, 2083
BglI	GCCNNNNNGGC	1 cut(s)	2510
BglII	AGATCT	2 cut(s)	1053, 2190
Bme1390I	CCNGG	4 cut(s)	478, 519, 860, 2584
Bme18I	GGWCC	7 cut(s)	30, 115, 325, 563, 1507, 1645, 2440
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	2398
BmgT120I	GGNCC	8 cut(s)	30, 115, 325, 563, 721, 1507, 1645, 2440
BmiI	GGNNCC	6 cut(s)	171, 770, 854, 1173, 1509, 1646
BmrFI	CCNGG	4 cut(s)	478, 519, 860, 2584
BmrI	ACTGGG	2 cut(s)	1388, 2037
BmtI	GCTAGC	1 cut(s)	2526
BmuI	ACTGGG	2 cut(s)	1388, 2037
BpiI	GAAGAC	3 cut(s)	269, 315, 2219
BplI	GAGNNNNNCTC	2 cut(s)	1012, 1044
BpmI	CTGGAG	4 cut(s)	756, 1182, 1605, 1683
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	5 cut(s)	128, 629, 1560, 2297, 2527
BpuMI	CCSGG	1 cut(s)	2584
BsaAI	YACGTR	4 cut(s)	1322, 1745, 2135, 2561
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	853
BsaI	GGTCTC	3 cut(s)	234, 349, 2174
BsaJI	CCNNGG	2 cut(s)	476, 1639
BsaWI	WCCGGW	1 cut(s)	2437
BsaXI	ACNNNNNCTCC	4 cut(s)	918, 948, 1155, 1185
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 334, 865, 913, 966, 2020
Bse1I	ACTGG	7 cut(s)	118, 1078, 1154, 1165, 1394, 1546, 2032
Bse3DI	GCAATG	4 cut(s)	183, 345, 534, 2529
Bse8I	GATNNNNATC	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	2437
BseBI	CCWGG	3 cut(s)	478, 519, 860
BseDI	CCNNGG	2 cut(s)	476, 1639
BseGI	GGATG	8 cut(s)	283, 530, 603, 1406, 1542, 1696, 1906, 2152
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	100, 334, 865, 913, 966, 2020
BseMI	GCAATG	4 cut(s)	183, 345, 534, 2529
BseMII	CTCAG	8 cut(s)	11, 98, 360, 377, 779, 1191, 1946, 2124
BseNI	ACTGG	7 cut(s)	118, 1078, 1154, 1165, 1394, 1546, 2032
BseRI	GAGGAG	5 cut(s)	29, 37, 162, 428, 1125
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	1 cut(s)	1018
Bsh1285I	CGRYCG	2 cut(s)	9, 1312
BshFI	GGCC	4 cut(s)	723, 1809, 2282, 2557
BshNI	GGYRCC	3 cut(s)	768, 852, 1171
BsiEI	CGRYCG	2 cut(s)	9, 1312
BsiSI	CCGG	2 cut(s)	2438, 2584
BslFI	GGGAC	1 cut(s)	2400
BslI	CCNNNNNNNGG	6 cut(s)	100, 334, 865, 913, 966, 2020
BsmAI	GTCTC	7 cut(s)	234, 349, 1380, 1578, 1581, 1951, 2174
BsmBI	CGTCTC	2 cut(s)	1581, 1951
BsmFI	GGGAC	1 cut(s)	2400
BsmI	GAATGC	1 cut(s)	2072
BsnI	GGCC	4 cut(s)	723, 1809, 2282, 2557
Bso31I	GGTCTC	3 cut(s)	234, 349, 2174
Bsp119I	TTCGAA	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	2437
Bsp19I	CCATGG	1 cut(s)	1639
BspANI	GGCC	4 cut(s)	723, 1809, 2282, 2557
BspCNI	CTCAG	8 cut(s)	12, 97, 359, 376, 780, 1192, 1947, 2123
BspEI	TCCGGA	1 cut(s)	2437
BspFNI	CGCG	1 cut(s)	1018
BspLI	GGNNCC	6 cut(s)	171, 770, 854, 1173, 1509, 1646
BspMAI	CTGCAG	2 cut(s)	321, 1798
BspMI	ACCTGC	2 cut(s)	313, 1255
BspOI	GCTAGC	1 cut(s)	2526
BspPI	GGATC	3 cut(s)	1738, 1848, 2363
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	3 cut(s)	768, 852, 1171
BspTI	CTTAAG	2 cut(s)	245, 454
BspTNI	GGTCTC	3 cut(s)	234, 349, 2174
BsrBI	CCGCTC	3 cut(s)	74, 83, 2009
BsrDI	GCAATG	4 cut(s)	183, 345, 534, 2529
BsrI	ACTGG	7 cut(s)	118, 1078, 1154, 1165, 1394, 1546, 2032
BssECI	CCNNGG	2 cut(s)	476, 1639
BssNAI	GTATAC	1 cut(s)	1567
BssNI	GRCGYC	1 cut(s)	853
BssSI	CACGAG	4 cut(s)	193, 207, 237, 1113
BssT1I	CCWWGG	1 cut(s)	1639
Bst1107I	GTATAC	1 cut(s)	1567
Bst2BI	CACGAG	4 cut(s)	193, 207, 237, 1113
Bst2UI	CCWGG	3 cut(s)	478, 519, 860
Bst4CI	ACNGT	4 cut(s)	499, 1275, 2263, 2289
Bst6I	CTCTTC	3 cut(s)	102, 162, 1822
BstACI	GRCGYC	1 cut(s)	853
BstAFI	CTTAAG	2 cut(s)	245, 454
BstAPI	GCANNNNNTGC	4 cut(s)	536, 917, 1787, 2123
BstBAI	YACGTR	4 cut(s)	1322, 1745, 2135, 2561
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	8 cut(s)	234, 599, 687, 1176, 1316, 1458, 1939, 2524
BstDSI	CCRYGG	1 cut(s)	1639
BstF5I	GGATG	8 cut(s)	283, 530, 603, 1406, 1542, 1696, 1906, 2152
BstFNI	CGCG	1 cut(s)	1018
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	669, 855
BstMAI	GTCTC	7 cut(s)	234, 349, 1380, 1578, 1581, 1951, 2174
BstMCI	CGRYCG	2 cut(s)	9, 1312
BstNI	CCWGG	3 cut(s)	478, 519, 860
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	4 cut(s)	476, 517, 858, 2582
BstSFI	CTRYAG	4 cut(s)	317, 690, 1347, 1794
BstUI	CGCG	1 cut(s)	1018
BstV2I	GAAGAC	3 cut(s)	269, 315, 2219
BstX2I	RGATCY	4 cut(s)	1053, 1730, 2190, 2368
BstYI	RGATCY	4 cut(s)	1053, 1730, 2190, 2368
BstZ17I	GTATAC	1 cut(s)	1567
BsuI	GTATCC	3 cut(s)	883, 1589, 2083
BsuRI	GGCC	4 cut(s)	723, 1809, 2282, 2557
BtgI	CCRYGG	1 cut(s)	1639
BtrI	CACGTC	1 cut(s)	2398
BtsCI	GGATG	8 cut(s)	283, 530, 603, 1406, 1542, 1696, 1906, 2152
BtsIMutI	CAGTG	3 cut(s)	753, 2391, 2456
BveI	ACCTGC	2 cut(s)	313, 1255
Cac8I	GCNNGC	8 cut(s)	234, 599, 687, 1176, 1316, 1458, 1939, 2524
CfoI	GCGC	2 cut(s)	669, 855
Cfr13I	GGNCC	8 cut(s)	30, 115, 325, 563, 721, 1507, 1645, 2440
Csp6I	GTAC	3 cut(s)	584, 1433, 2569
CspCI	CAANNNNNGTGG	2 cut(s)	2547, 2582
CviQI	GTAC	3 cut(s)	584, 1433, 2569
DinI	GGCGCC	1 cut(s)	854
DrdI	GACNNNNNNGTC	1 cut(s)	1643
DriI	GACNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	1643
EaeI	YGGCCR	2 cut(s)	1807, 2555
Eam1104I	CTCTTC	3 cut(s)	102, 162, 1822
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	3 cut(s)	102, 162, 1822
Eco130I	CCWWGG	1 cut(s)	1639
Eco31I	GGTCTC	3 cut(s)	234, 349, 2174
Eco47I	GGWCC	7 cut(s)	30, 115, 325, 563, 1507, 1645, 2440
Eco57I	CTGAAG	5 cut(s)	83, 761, 1674, 1889, 2238
Eco72I	CACGTG	2 cut(s)	2135, 2561
EcoO109I	RGGNCCY	2 cut(s)	1507, 1645
EcoRI	GAATTC	1 cut(s)	951
EcoRII	CCWGG	3 cut(s)	476, 517, 858
EcoT14I	CCWWGG	1 cut(s)	1639
EcoT22I	ATGCAT	1 cut(s)	733
EgeI	GGCGCC	1 cut(s)	854
EheI	GGCGCC	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	1639
Esp3I	CGTCTC	2 cut(s)	1581, 1951
FalI	AAGNNNNNCTT	2 cut(s)	2211, 2243
FaqI	GGGAC	1 cut(s)	2400
FauI	CCCGC	2 cut(s)	694, 1890
FauNDI	CATATG	2 cut(s)	396, 1252
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	1243, 1566
FokI	GGATG	8 cut(s)	290, 517, 590, 1393, 1529, 1703, 1913, 2159
FspBI	CTAG	6 cut(s)	570, 590, 995, 1710, 2312, 2523
GlaI	GCGC	2 cut(s)	668, 854
GsuI	CTGGAG	4 cut(s)	756, 1182, 1605, 1683
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	4 cut(s)	723, 1809, 2282, 2557
HapII	CCGG	2 cut(s)	2438, 2584
HhaI	GCGC	2 cut(s)	669, 855
Hin1I	GRCGYC	1 cut(s)	853
Hin6I	GCGC	2 cut(s)	667, 853
HinP1I	GCGC	2 cut(s)	667, 853
HincII	GTYRAC	1 cut(s)	1244
HindII	GTYRAC	1 cut(s)	1244
HindIII	AAGCTT	3 cut(s)	56, 382, 451
HinfI	GANTC	7 cut(s)	646, 970, 1013, 1580, 2155, 2413, 2483
HpaII	CCGG	2 cut(s)	2438, 2584
HphI	GGTGA	4 cut(s)	896, 1241, 1961, 2003
Hpy166II	GTNNAC	5 cut(s)	674, 751, 1244, 1567, 1952
Hpy8I	GTNNAC	5 cut(s)	674, 751, 1244, 1567, 1952
HpyAV	CCTTC	9 cut(s)	361, 455, 734, 782, 970, 974, 1649, 1940, 2369
HpyCH4III	ACNGT	4 cut(s)	499, 1275, 2263, 2289
HpyCH4IV	ACGT	8 cut(s)	436, 782, 1321, 1442, 1744, 2134, 2397, 2560
HpySE526I	ACGT	8 cut(s)	436, 782, 1321, 1442, 1744, 2134, 2397, 2560
Hsp92I	GRCGYC	1 cut(s)	853
HspAI	GCGC	2 cut(s)	667, 853
KasI	GGCGCC	1 cut(s)	852
Kpn2I	TCCGGA	1 cut(s)	2437
Ksp22I	TGATCA	1 cut(s)	391
LmnI	GCTCC	7 cut(s)	79, 175, 577, 1138, 1400, 1664, 2586
MaeI	CTAG	6 cut(s)	570, 590, 995, 1710, 2312, 2523
MaeII	ACGT	8 cut(s)	436, 782, 1321, 1442, 1744, 2134, 2397, 2560
MaeIII	GTNAC	4 cut(s)	487, 902, 1269, 2130
MbiI	CCGCTC	3 cut(s)	74, 83, 2009
MfeI	CAATTG	1 cut(s)	1623
MflI	RGATCY	4 cut(s)	1053, 1730, 2190, 2368
MlsI	TGGCCA	2 cut(s)	1809, 2557
MluNI	TGGCCA	2 cut(s)	1809, 2557
Mly113I	GGCGCC	1 cut(s)	853
MlyI	GAGTC	2 cut(s)	2164, 2422
MmeI	TCCRAC	4 cut(s)	102, 916, 1378, 1425
Mox20I	TGGCCA	2 cut(s)	1809, 2557
Mph1103I	ATGCAT	1 cut(s)	733
MroI	TCCGGA	1 cut(s)	2437
MroXI	GAANNNNTTC	2 cut(s)	817, 1215
MscI	TGGCCA	2 cut(s)	1809, 2557
MslI	CAYNNNNRTG	2 cut(s)	1415, 2396
Msp20I	TGGCCA	2 cut(s)	1809, 2557
MspA1I	CMGCKG	5 cut(s)	27, 350, 504, 1379, 1559
MspCI	CTTAAG	2 cut(s)	245, 454
MspI	CCGG	2 cut(s)	2438, 2584
MspR9I	CCNGG	4 cut(s)	478, 519, 860, 2584
MunI	CAATTG	1 cut(s)	1623
Mva1269I	GAATGC	1 cut(s)	2072
MvaI	CCWGG	3 cut(s)	478, 519, 860
MvnI	CGCG	1 cut(s)	1018
NarI	GGCGCC	1 cut(s)	853
NciI	CCSGG	1 cut(s)	2584
NcoI	CCATGG	1 cut(s)	1639
NdeI	CATATG	2 cut(s)	396, 1252
NheI	GCTAGC	1 cut(s)	2522
NlaIV	GGNNCC	6 cut(s)	171, 770, 854, 1173, 1509, 1646
NmeAIII	GCCGAG	1 cut(s)	1204
NmuCI	GTSAC	3 cut(s)	487, 902, 2130
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	2396
PcsI	WCGNNNNNNNCGW	1 cut(s)	1240
PctI	GAATGC	1 cut(s)	2072
PdmI	GAANNNNTTC	2 cut(s)	817, 1215
PfeI	GAWTC	5 cut(s)	646, 970, 1013, 1580, 2483
PflFI	GACNNNGTC	1 cut(s)	2313
PflMI	CCANNNNNTGG	1 cut(s)	334
PleI	GAGTC	2 cut(s)	2163, 2421
PluTI	GGCGCC	1 cut(s)	856
PmaCI	CACGTG	2 cut(s)	2135, 2561
PmlI	CACGTG	2 cut(s)	2135, 2561
PpsI	GAGTC	2 cut(s)	2163, 2421
Ppu21I	YACGTR	4 cut(s)	1322, 1745, 2135, 2561
PpuMI	RGGWCCY	2 cut(s)	1507, 1645
PshBI	ATTAAT	1 cut(s)	1155
Psp5II	RGGWCCY	2 cut(s)	1507, 1645
Psp6I	CCWGG	3 cut(s)	476, 517, 858
PspCI	CACGTG	2 cut(s)	2135, 2561
PspGI	CCWGG	3 cut(s)	476, 517, 858
PspN4I	GGNNCC	6 cut(s)	171, 770, 854, 1173, 1509, 1646
PspPI	GGNCC	8 cut(s)	30, 115, 325, 563, 721, 1507, 1645, 2440
PspPPI	RGGWCCY	2 cut(s)	1507, 1645
PsrI	GAACNNNNNNTAC	2 cut(s)	2368, 2400
PstI	CTGCAG	2 cut(s)	321, 1798
PsuI	RGATCY	4 cut(s)	1053, 1730, 2190, 2368
PsyI	GACNNNGTC	1 cut(s)	2313
PvuII	CAGCTG	4 cut(s)	27, 350, 1379, 1559
RsaI	GTAC	3 cut(s)	585, 1434, 2570
RsaNI	GTAC	3 cut(s)	584, 1433, 2569
RseI	CAYNNNNRTG	2 cut(s)	1415, 2396
SalI	GTCGAC	1 cut(s)	1242
Sau96I	GGNCC	8 cut(s)	30, 115, 325, 563, 721, 1507, 1645, 2440
SchI	GAGTC	2 cut(s)	2164, 2422
ScrFI	CCNGG	4 cut(s)	478, 519, 860, 2584
SfcI	CTRYAG	4 cut(s)	317, 690, 1347, 1794
SfoI	GGCGCC	1 cut(s)	854
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	7 cut(s)	30, 115, 325, 563, 1507, 1645, 2440
SmiMI	CAYNNNNRTG	2 cut(s)	1415, 2396
SmlI	CTYRAG	7 cut(s)	143, 245, 454, 608, 1575, 2276, 2506
SmoI	CTYRAG	7 cut(s)	143, 245, 454, 608, 1575, 2276, 2506
SspDI	GGCGCC	1 cut(s)	852
SspI	AATATT	2 cut(s)	1775, 2210
SspMI	CTAG	6 cut(s)	570, 590, 995, 1710, 2312, 2523
StyD4I	CCNGG	4 cut(s)	476, 517, 858, 2582
StyI	CCWWGG	1 cut(s)	1639
TaaI	ACNGT	4 cut(s)	499, 1275, 2263, 2289
TaiI	ACGT	8 cut(s)	439, 785, 1324, 1445, 1747, 2137, 2400, 2563
TaqI	TCGA	8 cut(s)	63, 160, 955, 1011, 1243, 1308, 2158, 2374
TaqII	GACCGA	2 cut(s)	23, 47
TauI	GCSGC	3 cut(s)	74, 1196, 2009
TfiI	GAWTC	5 cut(s)	646, 970, 1013, 1580, 2483
TscAI	CASTG	3 cut(s)	753, 2398, 2463
TseFI	GTSAC	3 cut(s)	487, 902, 2130
Tsp45I	GTSAC	3 cut(s)	487, 902, 2130
TspGWI	ACGGA	2 cut(s)	1160, 1515
TspRI	CASTG	3 cut(s)	753, 2398, 2463
Tth111I	GACNNNGTC	1 cut(s)	2313
Van91I	CCANNNNNTGG	1 cut(s)	334
Vha464I	CTTAAG	2 cut(s)	245, 454
VpaK11BI	GGWCC	7 cut(s)	30, 115, 325, 563, 1507, 1645, 2440
VspI	ATTAAT	1 cut(s)	1155
XapI	RAATTY	8 cut(s)	109, 940, 951, 1215, 1472, 1858, 2052, 2407
XbaI	TCTAGA	1 cut(s)	994
XceI	RCATGY	1 cut(s)	757
XmiI	GTMKAC	2 cut(s)	1243, 1566
XmnI	GAANNNNTTC	2 cut(s)	817, 1215
XspI	CTAG	6 cut(s)	570, 590, 995, 1710, 2312, 2523
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.