Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01098

Orthogroup ID

OG0005404

Physical Location & Seq

Genomic Coordinates Reverse (-)

39388 .. 47115

Gene Structure 7728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGCGACCGATCAAAATCTGAGCAGCTGGACCGATCTCCTCCACTCCTCCACCAAGCTTCTCGAACAAGCCGCTCCCTCCGCTCAGTTTCCCCCTCTTCAGAGAAATTTGGATCAGTTGGAAACATTATCTAAGAAGCTCAAGGCGAAAACTCTTCGAAATGAGGCTCCTCAACAATCCATTGCTGCCACGAGGCTTCTTGCTCGTGAGGGATTAAACGCAGAGCAGCTTGCACGGGACCTCAAGTCTTTTGAATTGAAGACAACATTTGAGGATGTTTTTCCTGCCGAAGCAACGAGCATTGAAGACTATCTGCAGCAGGTCCATGAAATGGCAATGGTCTCAGCTGTTCAAGAAGCTCAGAAGGATAACCTTAGAAGCTTTAATGATCATATGTTAAAAGTTTTGGAGGAGGATTGGCAGATGGAAAAACGTGATTTCCTTCAAAGCTTAAGCCAGATTTCAACATTACCCAGGACTAATGTGACTTATACTGTCAGCGGTGGTAGTCGTCCTGGTCAACTTGTACCCCTAGATAGCAAGCCCATCCTTGAGAGAAAAGCCTCTGTTTATGCGGAAGTTGTAAAGAATCTCAACAATGCAAGGCAGCGCAGTTTACCTTTTAAGCCCGCTACAGCTTTCAAGGGTGCGTATGAAAGTTTGGGCCTTCATGCATCTGGAGGAAAATCAGTGAACATGCAGAAGATATGGCACCTTCTTCAGACGTTGCTGAGTGAAGATATAACCATACAACGAAGTGTTTCAAAAAAGATGTCATTAGTTATTGGTGCAAGGCGCCACCTGGAATGGGGGCATGAAAAATACATCATGGATACAATTCAAAGTCACCCTGCACAGGCTGCTCTTGGAGGGGTTGTTGGAAATTTACAAAGAATTCGAGCCTTCCTTCGGATTCGTTTAAGAGATTATGGAGTTCTAGATTTTGATGCAGTTGATTCGCGGAGGCAGCCTCCTGTTGATACCACTTGGCAGCAGATCTACTTTTGCATGAGAACTGGCTATTATGATGAAGCAAGGTCCGTTGCTTTGTCATCTCGTGCTTCAAACCACTTTGCTCCTCTGCTCACGGAGTGGATTAATACTGGAGGCATGGTGCCTGCCGAGATTGCAACTGCGGCATCTGAGGAATGTGAAAAAATTCTAAGAATTGGTGATCGTGCTGGTCGACCTGCATATGACAAGAAAAAGTTGTTACTGTATGCTCTCATATCTGGTTCTCGTAGGCAAATTGACCGCCTGCTACGTGATCTACCAACTCTTTTCAACACTATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTAAGAGACTGCCCAGTTGGAGCTACATCCATTGTTATGAATGAGAGCTTGGTACCATACACGTTGGAAGATTTGCAGGCTTACTTAAATAAATTTGACCCATCATATTACACAAAAAACGGAAAGGACCCTCTGGTATATCCATACATTCTGCTTTTAAGCATCCAGTTGATACCAGCTGTTGTATACTTGTCTCAAGAATCTGGAGACGAGGGATACAACATTGATGCTGCCCACATATCAATTGTGTTAGCAGACCATGGGGTCCTTTCTGAAGGTGCTGGAGCTGGACAAAAGATGGGAGTGATGGATGCTTATGCAGAGGCATCTAGCATCATCAGGCAGTATGGATCTGCATATTTACGTGTTGGTAATCTATCAATGGCATTAGAATATTATGCACAGGCTGCTGCTGCAGTTGGTGGTGGCCATTTGTCATGGTCTGGAAGAGGTAATGTGGATCAGCAAAGGCAAAGAAATTTGATGCTGAAGCAACTACTTACAGAGCTATTGTTGCGGGATGGTGGGGTATATCTTTTACTTGGTTCAAGAGGTGCTGGCGAAGAAGGTGAACTGAGACGATTTTTGATTGATGTAAAAGCAAGACAACAATTTCTGCTTGAAGCCGCTCACCATTGTCAGGAAACTGGGTTGTATGAAAAATCCATAGAAATTCAGAAACGAATAGGGGCATTCTCAATGGCATTGGATACCATTAACAAGTGCCTCTCAGAAGCAATTTGTGCCTTGTCACGTGGCAGATCGGATGGGGAGAGTCAAACTGCTGGTCTCATTCATTCCGGAAATGAGATCTTGGAGATGGACAAATATTCATCTGAAGTCAGTCCTCAAGAGAGGGAGAGTGTTTTAGAGCAGCAGACTGTTTTAAGACAACTTGAGGCCATACTGTCAGTACATAAGTTGGCAAGACTAGGTCATTATGTTGATGCTTTGAGGGAGGTTGCCAAACTTCAATTCCTTCCTTTAGATCCTCGAACACCAGATACTACCACTGATGGATTCAAGAACTTGAGTCCCCATGTCCAAGTTTGTGTTCCGGACCTCTTGAAAGTTGCACTGACTTGTCTGGACAACATGGTGGATTCTGATGGATCACTCCGAGCCTTGAGGGCTAAGATTGCTAGCTTCATTGCAAATAATTCCAATATAAATTGGCCTCGTGATTTGTACGAAAAACTTGCCCGGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

845

Amino Acids

94.28

Weight (kDa)

6.56

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	232 - 839	1.7e-102	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41620 AT3G57350
fragaria_vesca	FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390
malus_domestica	MD00G1107400.v1.1 MD12G1080600.v1.1 MD14G1076700.v1.1
prunus_persica	Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1
pyrus_communis	pycom12g06710 pycom14g06500
rosa_chinensis	RchiOBHm_Chr3g0483381
rosa_laevigata	RLG00000023288
rosa_multiflora	Rmu_sc0006349.1_g000012
rosa_roxburghii	Rroxscaffold_6G00398400
rosa_rugosa	Rorug03G0205600
rosa_samantha	Rh3AG254000 Rh3CG288100 Rh3DG283900
rosa_wichuraiana	Rw0G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1586
Acc36I	ACCTGC	2 cut(s)	310, 1198
Acc65I	GGTACC	1 cut(s)	1375
AccB1I	GGYRCC	4 cut(s)	711, 795, 1114, 1375
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	3 cut(s)	74, 83, 1952
AccI	GTMKAC	2 cut(s)	1186, 1509
AccII	CGCG	1 cut(s)	961
AccIII	TCCGGA	2 cut(s)	2123, 2380
AclWI	GGATC	5 cut(s)	120, 1681, 1791, 2306, 2443
AcoI	YGGCCR	1 cut(s)	1750
AcsI	RAATTY	7 cut(s)	106, 883, 894, 1158, 1415, 1801, 1995
AcuI	CTGAAG	5 cut(s)	83, 704, 1617, 1832, 2181
AcvI	CACGTG	1 cut(s)	2078
AcyI	GRCGYC	1 cut(s)	796
AdeI	CACNNNGTG	1 cut(s)	1092
AfaI	GTAC	4 cut(s)	528, 1377, 2238, 2513
AfiI	CCNNNNNNNGG	5 cut(s)	331, 808, 856, 909, 1963
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	2 cut(s)	1383, 1687
AhdI	GACNNNNNGTC	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	473, 514, 801
AjuI	GAANNNNNNNTTGG	6 cut(s)	1355, 1387, 2282, 2314, 2361, 2393
Alw26I	GTCTC	6 cut(s)	346, 1323, 1521, 1524, 1894, 2117
AlwI	GGATC	5 cut(s)	120, 1681, 1791, 2306, 2443
Aor13HI	TCCGGA	2 cut(s)	2123, 2380
AoxI	GGCC	4 cut(s)	664, 1750, 2223, 2498
ApoI	RAATTY	7 cut(s)	106, 883, 894, 1158, 1415, 1801, 1995
ArsI	GACNNNNNNTTYG	4 cut(s)	758, 790, 2095, 2127
AseI	ATTAAT	1 cut(s)	1098
Asp700I	GAANNNNTTC	2 cut(s)	760, 1158
Asp718I	GGTACC	1 cut(s)	1375
AspLEI	GCGC	2 cut(s)	612, 798
AspS9I	GGNCC	8 cut(s)	30, 238, 322, 664, 1038, 1450, 1588, 2383
AsuC2I	CCSGG	1 cut(s)	2527
AsuHPI	GGTGA	4 cut(s)	839, 1184, 1904, 1946
AsuII	TTCGAA	1 cut(s)	157
AsuNHI	GCTAGC	1 cut(s)	2465
AvaII	GGWCC	7 cut(s)	30, 238, 322, 1038, 1450, 1588, 2383
BalI	TGGCCA	1 cut(s)	1752
BanI	GGYRCC	4 cut(s)	711, 795, 1114, 1375
BauI	CACGAG	4 cut(s)	190, 204, 1056, 2502
BbrPI	CACGTG	1 cut(s)	2078
BbsI	GAAGAC	2 cut(s)	266, 312
BcgI	CGANNNNNNTGC	4 cut(s)	939, 973, 2504, 2538
BciT130I	CCWGG	3 cut(s)	475, 516, 803
BciVI	GTATCC	3 cut(s)	826, 1532, 2026
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	2527
BcoDI	GTCTC	6 cut(s)	346, 1323, 1521, 1524, 1894, 2117
BfaI	CTAG	5 cut(s)	533, 938, 1653, 2255, 2466
BfmI	CTRYAG	4 cut(s)	314, 633, 1290, 1737
BfoI	RGCGCY	1 cut(s)	799
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	2 cut(s)	310, 1198
BfuI	GTATCC	3 cut(s)	826, 1532, 2026
BglI	GCCNNNNNGGC	1 cut(s)	2453
BglII	AGATCT	2 cut(s)	996, 2133
Bme1390I	CCNGG	4 cut(s)	475, 516, 803, 2527
Bme18I	GGWCC	7 cut(s)	30, 238, 322, 1038, 1450, 1588, 2383
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	8 cut(s)	30, 238, 322, 664, 1038, 1450, 1588, 2383
BmiI	GGNNCC	8 cut(s)	168, 239, 713, 797, 1116, 1377, 1452, 1589
BmrFI	CCNGG	4 cut(s)	475, 516, 803, 2527
BmrI	ACTGGG	2 cut(s)	1331, 1980
BmtI	GCTAGC	1 cut(s)	2469
BmuI	ACTGGG	2 cut(s)	1331, 1980
BpiI	GAAGAC	2 cut(s)	266, 312
BplI	GAGNNNNNCTC	2 cut(s)	955, 987
BpmI	CTGGAG	4 cut(s)	699, 1125, 1548, 1626
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	8 cut(s)	125, 227, 572, 1503, 2157, 2240, 2374, 2470
BpuMI	CCSGG	1 cut(s)	2527
BsaAI	YACGTR	3 cut(s)	1265, 1688, 2078
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	796
BsaI	GGTCTC	2 cut(s)	346, 2117
BsaJI	CCNNGG	2 cut(s)	473, 1582
BsaWI	WCCGGW	2 cut(s)	2123, 2380
BsaXI	ACNNNNNCTCC	4 cut(s)	861, 891, 1098, 1128
Bsc4I	CCNNNNNNNGG	5 cut(s)	331, 808, 856, 909, 1963
Bse1I	ACTGG	5 cut(s)	1021, 1108, 1337, 1489, 1975
Bse3DI	GCAATG	3 cut(s)	180, 342, 2472
Bse8I	GATNNNNATC	1 cut(s)	15
BseAI	TCCGGA	2 cut(s)	2123, 2380
BseBI	CCWGG	3 cut(s)	475, 516, 803
BseDI	CCNNGG	2 cut(s)	473, 1582
BseGI	GGATG	7 cut(s)	280, 546, 1349, 1485, 1639, 1849, 2095
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	5 cut(s)	331, 808, 856, 909, 1963
BseMI	GCAATG	3 cut(s)	180, 342, 2472
BseMII	CTCAG	8 cut(s)	11, 98, 357, 374, 722, 1134, 1889, 2067
BseNI	ACTGG	5 cut(s)	1021, 1108, 1337, 1489, 1975
BseRI	GAGGAG	5 cut(s)	29, 37, 159, 425, 1068
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	1 cut(s)	961
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	666, 1752, 2225, 2500
BshNI	GGYRCC	4 cut(s)	711, 795, 1114, 1375
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	2124, 2381, 2527
BslFI	GGGAC	2 cut(s)	251, 2343
BslI	CCNNNNNNNGG	5 cut(s)	331, 808, 856, 909, 1963
BsmAI	GTCTC	6 cut(s)	346, 1323, 1521, 1524, 1894, 2117
BsmBI	CGTCTC	2 cut(s)	1524, 1894
BsmFI	GGGAC	2 cut(s)	251, 2343
BsmI	GAATGC	1 cut(s)	2015
BsnI	GGCC	4 cut(s)	666, 1752, 2225, 2500
Bso31I	GGTCTC	2 cut(s)	346, 2117
Bsp119I	TTCGAA	1 cut(s)	157
Bsp13I	TCCGGA	2 cut(s)	2123, 2380
Bsp19I	CCATGG	1 cut(s)	1582
BspANI	GGCC	4 cut(s)	666, 1752, 2225, 2500
BspCNI	CTCAG	8 cut(s)	12, 97, 356, 373, 723, 1135, 1890, 2066
BspEI	TCCGGA	2 cut(s)	2123, 2380
BspFNI	CGCG	1 cut(s)	961
BspLI	GGNNCC	8 cut(s)	168, 239, 713, 797, 1116, 1377, 1452, 1589
BspMAI	CTGCAG	2 cut(s)	318, 1741
BspMI	ACCTGC	2 cut(s)	310, 1198
BspOI	GCTAGC	1 cut(s)	2469
BspPI	GGATC	5 cut(s)	120, 1681, 1791, 2306, 2443
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	4 cut(s)	711, 795, 1114, 1375
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	2 cut(s)	346, 2117
BsrBI	CCGCTC	3 cut(s)	74, 83, 1952
BsrDI	GCAATG	3 cut(s)	180, 342, 2472
BsrI	ACTGG	5 cut(s)	1021, 1108, 1337, 1489, 1975
BssECI	CCNNGG	2 cut(s)	473, 1582
BssNAI	GTATAC	1 cut(s)	1510
BssNI	GRCGYC	1 cut(s)	796
BssSI	CACGAG	4 cut(s)	190, 204, 1056, 2502
BssT1I	CCWWGG	1 cut(s)	1582
Bst1107I	GTATAC	1 cut(s)	1510
Bst2BI	CACGAG	4 cut(s)	190, 204, 1056, 2502
Bst2UI	CCWGG	3 cut(s)	475, 516, 803
Bst4CI	ACNGT	4 cut(s)	496, 1218, 2206, 2232
Bst6I	CTCTTC	3 cut(s)	102, 159, 1765
BstACI	GRCGYC	1 cut(s)	796
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	3 cut(s)	860, 1730, 2066
BstBAI	YACGTR	3 cut(s)	1265, 1688, 2078
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	8 cut(s)	231, 542, 630, 1119, 1259, 1401, 1882, 2467
BstDSI	CCRYGG	1 cut(s)	1582
BstF5I	GGATG	7 cut(s)	280, 546, 1349, 1485, 1639, 1849, 2095
BstFNI	CGCG	1 cut(s)	961
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	2 cut(s)	612, 798
BstMAI	GTCTC	6 cut(s)	346, 1323, 1521, 1524, 1894, 2117
BstMCI	CGRYCG	1 cut(s)	9
BstNI	CCWGG	3 cut(s)	475, 516, 803
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	4 cut(s)	473, 514, 801, 2525
BstSFI	CTRYAG	4 cut(s)	314, 633, 1290, 1737
BstUI	CGCG	1 cut(s)	961
BstV2I	GAAGAC	2 cut(s)	266, 312
BstX2I	RGATCY	4 cut(s)	996, 1673, 2133, 2311
BstYI	RGATCY	4 cut(s)	996, 1673, 2133, 2311
BstZ17I	GTATAC	1 cut(s)	1510
BsuI	GTATCC	3 cut(s)	826, 1532, 2026
BsuRI	GGCC	4 cut(s)	666, 1752, 2225, 2500
BtgI	CCRYGG	1 cut(s)	1582
BtsCI	GGATG	7 cut(s)	280, 546, 1349, 1485, 1639, 1849, 2095
BtsIMutI	CAGTG	3 cut(s)	696, 2334, 2399
BveI	ACCTGC	2 cut(s)	310, 1198
Cac8I	GCNNGC	8 cut(s)	231, 542, 630, 1119, 1259, 1401, 1882, 2467
CfoI	GCGC	2 cut(s)	612, 798
Cfr13I	GGNCC	8 cut(s)	30, 238, 322, 664, 1038, 1450, 1588, 2383
Csp6I	GTAC	4 cut(s)	527, 1376, 2237, 2512
CviQI	GTAC	4 cut(s)	527, 1376, 2237, 2512
DinI	GGCGCC	1 cut(s)	797
DraIII	CACNNNGTG	1 cut(s)	1092
DrdI	GACNNNNNNGTC	1 cut(s)	1586
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	1586
EaeI	YGGCCR	1 cut(s)	1750
Eam1104I	CTCTTC	3 cut(s)	102, 159, 1765
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	102, 159, 1765
Eco130I	CCWWGG	1 cut(s)	1582
Eco31I	GGTCTC	2 cut(s)	346, 2117
Eco47I	GGWCC	7 cut(s)	30, 238, 322, 1038, 1450, 1588, 2383
Eco57I	CTGAAG	5 cut(s)	83, 704, 1617, 1832, 2181
Eco72I	CACGTG	1 cut(s)	2078
EcoO109I	RGGNCCY	3 cut(s)	238, 1450, 1588
EcoRI	GAATTC	1 cut(s)	894
EcoRII	CCWGG	3 cut(s)	473, 514, 801
EcoT14I	CCWWGG	1 cut(s)	1582
EcoT22I	ATGCAT	1 cut(s)	676
EgeI	GGCGCC	1 cut(s)	797
EheI	GGCGCC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	1582
Esp3I	CGTCTC	2 cut(s)	1524, 1894
FaqI	GGGAC	2 cut(s)	251, 2343
FauI	CCCGC	2 cut(s)	637, 1833
FauNDI	CATATG	2 cut(s)	393, 1195
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	2 cut(s)	1186, 1509
FokI	GGATG	7 cut(s)	287, 533, 1336, 1472, 1646, 1856, 2102
FspBI	CTAG	5 cut(s)	533, 938, 1653, 2255, 2466
GlaI	GCGC	2 cut(s)	611, 797
GsuI	CTGGAG	4 cut(s)	699, 1125, 1548, 1626
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	4 cut(s)	666, 1752, 2225, 2500
HapII	CCGG	3 cut(s)	2124, 2381, 2527
HhaI	GCGC	2 cut(s)	612, 798
Hin1I	GRCGYC	1 cut(s)	796
Hin6I	GCGC	2 cut(s)	610, 796
HinP1I	GCGC	2 cut(s)	610, 796
HincII	GTYRAC	2 cut(s)	521, 1187
HindII	GTYRAC	2 cut(s)	521, 1187
HindIII	AAGCTT	3 cut(s)	56, 379, 448
HinfI	GANTC	8 cut(s)	589, 913, 956, 1523, 2098, 2343, 2356, 2426
HpaII	CCGG	3 cut(s)	2124, 2381, 2527
HphI	GGTGA	4 cut(s)	839, 1184, 1904, 1946
Hpy166II	GTNNAC	6 cut(s)	521, 617, 694, 1187, 1510, 1895
Hpy8I	GTNNAC	6 cut(s)	521, 617, 694, 1187, 1510, 1895
HpyAV	CCTTC	9 cut(s)	358, 452, 677, 725, 913, 917, 1592, 1883, 2312
HpyCH4III	ACNGT	4 cut(s)	496, 1218, 2206, 2232
HpyCH4IV	ACGT	6 cut(s)	433, 725, 1264, 1385, 1687, 2077
HpySE526I	ACGT	6 cut(s)	433, 725, 1264, 1385, 1687, 2077
Hsp92I	GRCGYC	1 cut(s)	796
HspAI	GCGC	2 cut(s)	610, 796
KasI	GGCGCC	1 cut(s)	795
Kpn2I	TCCGGA	2 cut(s)	2123, 2380
KpnI	GGTACC	1 cut(s)	1379
Ksp22I	TGATCA	1 cut(s)	388
LmnI	GCTCC	6 cut(s)	79, 172, 1081, 1343, 1607, 2529
MaeI	CTAG	5 cut(s)	533, 938, 1653, 2255, 2466
MaeII	ACGT	6 cut(s)	433, 725, 1264, 1385, 1687, 2077
MaeIII	GTNAC	4 cut(s)	484, 845, 1212, 2073
MbiI	CCGCTC	3 cut(s)	74, 83, 1952
MfeI	CAATTG	1 cut(s)	1566
MflI	RGATCY	4 cut(s)	996, 1673, 2133, 2311
MlsI	TGGCCA	1 cut(s)	1752
MluNI	TGGCCA	1 cut(s)	1752
Mly113I	GGCGCC	1 cut(s)	796
MlyI	GAGTC	2 cut(s)	2107, 2365
MmeI	TCCRAC	4 cut(s)	99, 859, 1321, 1368
Mox20I	TGGCCA	1 cut(s)	1752
Mph1103I	ATGCAT	1 cut(s)	676
MroI	TCCGGA	2 cut(s)	2123, 2380
MroXI	GAANNNNTTC	2 cut(s)	760, 1158
MscI	TGGCCA	1 cut(s)	1752
MslI	CAYNNNNRTG	1 cut(s)	1358
Msp20I	TGGCCA	1 cut(s)	1752
MspA1I	CMGCKG	5 cut(s)	27, 347, 501, 1322, 1502
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	3 cut(s)	2124, 2381, 2527
MspR9I	CCNGG	4 cut(s)	475, 516, 803, 2527
MunI	CAATTG	1 cut(s)	1566
Mva1269I	GAATGC	1 cut(s)	2015
MvaI	CCWGG	3 cut(s)	475, 516, 803
MvnI	CGCG	1 cut(s)	961
NarI	GGCGCC	1 cut(s)	796
NciI	CCSGG	1 cut(s)	2527
NcoI	CCATGG	1 cut(s)	1582
NdeI	CATATG	2 cut(s)	393, 1195
NheI	GCTAGC	1 cut(s)	2465
NlaIV	GGNNCC	8 cut(s)	168, 239, 713, 797, 1116, 1377, 1452, 1589
NmeAIII	GCCGAG	1 cut(s)	1147
NmuCI	GTSAC	3 cut(s)	484, 845, 2073
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	1183
PctI	GAATGC	1 cut(s)	2015
PdmI	GAANNNNTTC	2 cut(s)	760, 1158
PfeI	GAWTC	6 cut(s)	589, 913, 956, 1523, 2343, 2426
PflFI	GACNNNGTC	1 cut(s)	2256
PflMI	CCANNNNNTGG	1 cut(s)	331
PleI	GAGTC	2 cut(s)	2106, 2364
PluTI	GGCGCC	1 cut(s)	799
PmaCI	CACGTG	1 cut(s)	2078
PmlI	CACGTG	1 cut(s)	2078
PpsI	GAGTC	2 cut(s)	2106, 2364
Ppu21I	YACGTR	3 cut(s)	1265, 1688, 2078
PpuMI	RGGWCCY	3 cut(s)	238, 1450, 1588
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	3 cut(s)	238, 1450, 1588
Psp6I	CCWGG	3 cut(s)	473, 514, 801
PspCI	CACGTG	1 cut(s)	2078
PspGI	CCWGG	3 cut(s)	473, 514, 801
PspN4I	GGNNCC	8 cut(s)	168, 239, 713, 797, 1116, 1377, 1452, 1589
PspPI	GGNCC	8 cut(s)	30, 238, 322, 664, 1038, 1450, 1588, 2383
PspPPI	RGGWCCY	3 cut(s)	238, 1450, 1588
PsrI	GAACNNNNNNTAC	2 cut(s)	2311, 2343
PstI	CTGCAG	2 cut(s)	318, 1741
PsuI	RGATCY	4 cut(s)	996, 1673, 2133, 2311
PsyI	GACNNNGTC	1 cut(s)	2256
PvuII	CAGCTG	4 cut(s)	27, 347, 1322, 1502
RsaI	GTAC	4 cut(s)	528, 1377, 2238, 2513
RsaNI	GTAC	4 cut(s)	527, 1376, 2237, 2512
RseI	CAYNNNNRTG	1 cut(s)	1358
SalI	GTCGAC	1 cut(s)	1185
Sau96I	GGNCC	8 cut(s)	30, 238, 322, 664, 1038, 1450, 1588, 2383
SchI	GAGTC	2 cut(s)	2107, 2365
ScrFI	CCNGG	4 cut(s)	475, 516, 803, 2527
SfcI	CTRYAG	4 cut(s)	314, 633, 1290, 1737
SfoI	GGCGCC	1 cut(s)	797
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	7 cut(s)	30, 238, 322, 1038, 1450, 1588, 2383
SmiMI	CAYNNNNRTG	1 cut(s)	1358
SmlI	CTYRAG	9 cut(s)	140, 242, 451, 551, 1518, 2172, 2219, 2353, 2449
SmoI	CTYRAG	9 cut(s)	140, 242, 451, 551, 1518, 2172, 2219, 2353, 2449
SspDI	GGCGCC	1 cut(s)	795
SspI	AATATT	2 cut(s)	1718, 2153
SspMI	CTAG	5 cut(s)	533, 938, 1653, 2255, 2466
StyD4I	CCNGG	4 cut(s)	473, 514, 801, 2525
StyI	CCWWGG	1 cut(s)	1582
TaaI	ACNGT	4 cut(s)	496, 1218, 2206, 2232
TaiI	ACGT	6 cut(s)	436, 728, 1267, 1388, 1690, 2080
TaqI	TCGA	5 cut(s)	63, 157, 898, 1186, 2317
TaqII	GACCGA	2 cut(s)	23, 47
TatI	WGTACW	1 cut(s)	2236
TauI	GCSGC	3 cut(s)	74, 1139, 1952
TfiI	GAWTC	6 cut(s)	589, 913, 956, 1523, 2343, 2426
TscAI	CASTG	3 cut(s)	696, 2341, 2406
TseFI	GTSAC	3 cut(s)	484, 845, 2073
Tsp45I	GTSAC	3 cut(s)	484, 845, 2073
TspGWI	ACGGA	3 cut(s)	1030, 1103, 1458
TspRI	CASTG	3 cut(s)	696, 2341, 2406
Tth111I	GACNNNGTC	1 cut(s)	2256
Van91I	CCANNNNNTGG	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	7 cut(s)	30, 238, 322, 1038, 1450, 1588, 2383
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	7 cut(s)	106, 883, 894, 1158, 1415, 1801, 1995
XbaI	TCTAGA	1 cut(s)	937
XceI	RCATGY	1 cut(s)	700
XmiI	GTMKAC	2 cut(s)	1186, 1509
XmnI	GAANNNNTTC	2 cut(s)	760, 1158
XspI	CTAG	5 cut(s)	533, 938, 1653, 2255, 2466
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.